Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018392

Physical Location & Seq

Genomic Coordinates Forward (+)

9521244 .. 9522215

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCTACCGAGAGACACTACTTTCTTAGTGAGGTGCGGCAGGAAAAGACAATTGATTTCTTAAATGAAACCCGAACAGGAATGGTTCTGCTCAGATTGCAGCTCTACAAGCTTACCGGGAGTGGTTGGATGGATGGAGACGCCTATGACGACGTTCCAGTTGCAAGAGATGTTACTTATGAAGAATCTCCCATCTGGACAGAGTCTCACTTTTGGATCAGCCTCTCATCTCTCAAGCACTTGCCAAAAAGGAAGATGCACACTGAGCTTTTTACAAAGGTTCTAGAGGATTGGAGTGTGCCAAAACCTCAGCAGCCAGCTATTATTGCACAATTGTTTCAGGTGGTTGATGGAGCTTCCCCCAAGTTGTCTATCATTGTCGCCGTGCGCAGCCTCATTCTGCAGTTGTGCATTGTGAGCAGCTTTGGTTATGATGCAACGGAGCTCAATCCTACAGCTGAATCATCCACATTCGTTGAGGAGGATTTGGAGAAAGTGGGCCTTGAAAACTCGGGAGCTACAGAACACAAGAAAACCTCTTCATGTGTTTTGTGCATGGAGGGCTTTTTCGAATCTGACAACGGTGCTCAACAACTTACTCGCTTGCCCTGCTCGCACTATTATCATGGACGCTGCTTACTTCAGTGGCCATCAGAGATAAGTAGCTCGTGTCCCTTGTGCGAAAAGCCAAAGTCGAAATTTCATGCTTGTCGGCAATTTTGGGTTCGGATGGTGAGGAAGCACGTGGGTACTGTGATATCTGCTCTGATTTTTTGCCAATTTTTCAAGCCTACTCTTCAAGTCCAGCCTTTAGAGACCTCCCCTGCCCGTCCTAAAAGCTGGAAGCAGAGTCTGCTTGAAATGGATGAAATGATGACCATGACGGCAACCAAATTGGTAAACCATTTCCAATCCGGCAAACTATTGAAGCAAATTAAGAAAGAAGAGTGGTGGCAATTCAAGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

323

Amino Acids

37.17

Weight (kDa)

7.13

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	181 - 227	2.7e-09	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018392)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05601
rosa_chinensis	RchiOBHm_Chr5g0014071
rosa_laevigata	RLG00000032079
rosa_multiflora	Rmu_sc0007767.1_g000009
rosa_rugosa	Rorug05G0015300 Rorug05G0015400
rosa_samantha	Rh5AG109400 Rh5BG106200 Rh5DG104900
rosa_wichuraiana	Rw5G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	698
AcuI	CTGAAG	1 cut(s)	626
AcvI	CACGTG	1 cut(s)	745
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	751
AgsI	TTSAA	6 cut(s)	506, 787, 800, 860, 928, 961
Alw21I	GWGCWC	2 cut(s)	447, 589
Alw26I	GTCTC	4 cut(s)	7, 132, 210, 809
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	853
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	2 cut(s)	499, 647
ApeKI	GCWGC	5 cut(s)	100, 313, 390, 420, 633
ApoI	RAATTY	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	570
AvaI	CYCGRG	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	447
BauI	CACGAG	1 cut(s)	667
BbrPI	CACGTG	1 cut(s)	745
Bbv12I	GWGCWC	2 cut(s)	447, 589
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	5 cut(s)	112, 325, 402, 432, 620
BccI	CCATC	6 cut(s)	124, 128, 200, 344, 658, 724
BceAI	ACGGC	2 cut(s)	368, 900
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	4 cut(s)	7, 132, 210, 809
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	3 cut(s)	401, 453, 519
BisI	GCNGC	6 cut(s)	38, 101, 314, 391, 421, 634
BlsI	GCNGC	6 cut(s)	39, 102, 315, 392, 422, 635
Bme1390I	CCNGG	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	246, 424
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	745
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	809
Bse1I	ACTGG	1 cut(s)	158
BseGI	GGATG	5 cut(s)	135, 139, 464, 735, 871
BseMII	CTCAG	3 cut(s)	106, 255, 323
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	5 cut(s)	112, 325, 402, 432, 620
BshFI	GGCC	2 cut(s)	501, 649
BsiHKAI	GWGCWC	2 cut(s)	447, 589
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	117, 915
BslFI	GGGAC	1 cut(s)	657
BsmAI	GTCTC	4 cut(s)	7, 132, 210, 809
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	657
BsnI	GGCC	2 cut(s)	501, 649
Bso31I	GGTCTC	1 cut(s)	809
BsoBI	CYCGRG	1 cut(s)	511
Bsp119I	TTCGAA	1 cut(s)	570
Bsp1286I	GDGCHC	2 cut(s)	447, 589
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	501, 649
BspCNI	CTCAG	3 cut(s)	105, 256, 322
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	570
BspTNI	GGTCTC	1 cut(s)	809
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	667
Bst2BI	CACGAG	1 cut(s)	667
Bst4CI	ACNGT	2 cut(s)	584, 754
Bst6I	CTCTTC	3 cut(s)	544, 801, 939
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	853
BstBAI	YACGTR	1 cut(s)	745
BstBI	TTCGAA	1 cut(s)	570
BstC8I	GCNNGC	3 cut(s)	318, 605, 614
BstDEI	CTNAG	4 cut(s)	26, 92, 264, 309
BstF5I	GGATG	5 cut(s)	135, 139, 464, 735, 871
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	4 cut(s)	7, 132, 210, 809
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 109, 265, 326, 417, 561, 609, 613, 853
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	3 cut(s)	401, 453, 519
BstV1I	GCAGC	5 cut(s)	112, 325, 402, 432, 620
BsuRI	GGCC	2 cut(s)	501, 649
BtsCI	GGATG	5 cut(s)	135, 139, 464, 735, 871
BtsIMutI	CAGTG	2 cut(s)	261, 650
Cac8I	GCNNGC	3 cut(s)	318, 605, 614
CaiI	CAGNNNCTG	1 cut(s)	853
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	2 cut(s)	149, 639
Csp6I	GTAC	1 cut(s)	750
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	5 cut(s)	543, 556, 626, 704, 880
CviQI	GTAC	1 cut(s)	750
DdeI	CTNAG	4 cut(s)	26, 92, 264, 309
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	647
Eam1104I	CTCTTC	3 cut(s)	544, 801, 939
EarI	CTCTTC	3 cut(s)	544, 801, 939
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	809
Eco32I	GATATC	1 cut(s)	759
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	626
Eco72I	CACGTG	1 cut(s)	745
Eco88I	CYCGRG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	445
EcoRV	GATATC	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	5 cut(s)	546, 559, 629, 707, 883
FaiI	YATR	8 cut(s)	147, 180, 432, 544, 557, 627, 705, 881
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	5 cut(s)	542, 555, 625, 703, 879
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	38, 101, 314, 391, 421, 634
FokI	GGATG	5 cut(s)	142, 146, 451, 742, 878
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	6 cut(s)	38, 101, 314, 391, 421, 634
FspBI	CTAG	1 cut(s)	284
FspI	TGCGCA	1 cut(s)	389
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	6 cut(s)	38, 101, 314, 391, 421, 634
HaeIII	GGCC	2 cut(s)	501, 649
HapII	CCGG	2 cut(s)	117, 915
HgaI	GACGC	2 cut(s)	149, 639
HhaI	GCGC	1 cut(s)	390
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	546, 559, 629, 707, 883
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	5 cut(s)	185, 203, 461, 572, 850
HpaII	CCGG	2 cut(s)	117, 915
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	6, 901
Hpy188I	TCNGA	5 cut(s)	95, 577, 655, 729, 768
Hpy188III	TCNNGA	4 cut(s)	196, 284, 513, 961
Hpy8I	GTNNAC	2 cut(s)	6, 901
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	958
HpyCH4III	ACNGT	2 cut(s)	584, 754
HpyCH4IV	ACGT	2 cut(s)	153, 744
HpyCH4V	TGCA	8 cut(s)	100, 164, 259, 329, 403, 411, 437, 555
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 109, 265, 326, 417, 561, 609, 613, 853
HpyF3I	CTNAG	4 cut(s)	26, 92, 264, 309
HpySE526I	ACGT	2 cut(s)	153, 744
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	5 cut(s)	546, 559, 629, 707, 883
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	3 cut(s)	353, 442, 515
Lsp1109I	GCAGC	5 cut(s)	112, 325, 402, 432, 620
LweI	GCATC	2 cut(s)	246, 424
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	153, 744
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	5 cut(s)	194, 265, 531, 788, 956
MfeI	CAATTG	2 cut(s)	51, 332
MhlI	GDGCHC	2 cut(s)	447, 589
MlsI	TGGCCA	1 cut(s)	649
MluCI	AATT	8 cut(s)	51, 332, 698, 716, 779, 893, 933, 956
MluNI	TGGCCA	1 cut(s)	649
MlyI	GAGTC	2 cut(s)	212, 859
MmeI	TCCRAC	1 cut(s)	107
Mox20I	TGGCCA	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	649
MseI	TTAA	2 cut(s)	62, 936
Msp20I	TGGCCA	1 cut(s)	649
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	2 cut(s)	117, 915
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	2 cut(s)	51, 332
MwoI	GCNNNNNNNGC	9 cut(s)	97, 109, 265, 326, 417, 561, 609, 613, 853
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	5 cut(s)	546, 559, 629, 707, 883
NsbI	TGCGCA	1 cut(s)	389
NspV	TTCGAA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	185, 461, 572
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	6 cut(s)	39, 102, 315, 392, 422, 635
PleI	GAGTC	2 cut(s)	211, 858
PmaCI	CACGTG	1 cut(s)	745
PmlI	CACGTG	1 cut(s)	745
PpsI	GAGTC	2 cut(s)	211, 858
Ppu21I	YACGTR	1 cut(s)	745
Psp124BI	GAGCTC	1 cut(s)	447
PspCI	CACGTG	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	853
PsyI	GACNNNGTC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	751
RsaNI	GTAC	1 cut(s)	750
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	62, 936
SatI	GCNGC	6 cut(s)	38, 101, 314, 391, 421, 634
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	2 cut(s)	212, 859
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	447, 589
SfaNI	GCATC	2 cut(s)	246, 424
SfcI	CTRYAG	3 cut(s)	401, 453, 519
SfuI	TTCGAA	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	8 cut(s)	51, 332, 698, 716, 779, 893, 933, 956
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	584, 754
TaiI	ACGT	2 cut(s)	156, 747
TaqI	TCGA	2 cut(s)	570, 695
TasI	AATT	8 cut(s)	51, 332, 698, 716, 779, 893, 933, 956
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	3 cut(s)	185, 461, 572
Tru1I	TTAA	2 cut(s)	62, 936
Tru9I	TTAA	2 cut(s)	62, 936
TscAI	CASTG	2 cut(s)	268, 650
TseI	GCWGC	5 cut(s)	100, 313, 390, 420, 633
TspDTI	ATGAA	5 cut(s)	81, 195, 531, 692, 882
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	2 cut(s)	268, 650
Tth111I	GACNNNGTC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	698
XbaI	TCTAGA	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.