RLG00000033494

Protein of unknown function (DUF616)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
28030343 .. 28035349
5007 bp
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UTR
Exon/CDS
Intron
RLM00000033494

Sequence Viewer

Length: 1599 bp
ATGACTGGAGGGTCATTAGGTCTACGTACCGGAAGCTATGGATCACTACAACTACAGCAGATACAGAATGGTTTTCCACCTATTCCGCAGACAACCCCTCCTCCTCTTGCACGAAAGCCTTCCAAGGTGCTTCTTGCAAGTAGGGAGAAGGAAAGGGTTCTGCCCTTTGTCTGTAGATTTTTGGGCCGAAAAAAGGTCATAATGCTTCTTTTGGTTGTCCTTGCTCTTTTGGTTTTCGTATCCAATTCCTTCAATGTAAATAAAGGAATGGAAGATAAACATGACATTAAAATTACTTCTACACAGAATACCATGAAAGGAAAAGATGCAAATAGAGGCCTACTTACTCCTCCTCCCCATCTTCATACTGAGTCATTTACTGTTTTTCATGGAAATTCCCCTCCATTGGCCCATCAATGTGAGAATTTTGCATTTCCTCCTCCTCCTCCTTCATCTGGTCGAAAACGAAGTGGACCTCGCCCGTGTCCGGTATGTTATCTCCCTGTGGAGCAGGCTATAGCTAGTATGCCAAGTTCTTCTTCAGAATCACCTGTACTACATAATTTGACATATGTTTATGATGAAAATCCCACTAGAACTGAACCACATGGAGGTTCTGAATTTGGTGGATTTCCAACTCTGAGACAGAGAAATGATTCATATGATATAAAAGAATCCATGACGGTCCACTGTGGATTTGTGAAAGGCAATAAACCTGGAAACTATGATATAATACAGCAGCCAACAAACATTAGTGAGTTTTCGAGGAAAAATGTTCTATTCTACATGTTTATTGATGAAGAGACTGAAGCTTATATGAAGAATTCCAGTGTCCTGGGAAACAGTAGGAAAGTAGGATTATGGAGAGTTATTGTTGTCCGTAATGTTCCTTACACTGATGCAAGACGCAATGGAAAGATTCCAAAGCTTCTACTGCACAGGCTTTTCCCCAATGTCAGATATTCTATATGGATTGATGGAAAGCTTCAGCTTGTTGTGGATCCTTATCAGGTCCTTGAGAGGTTCTTGTGGCGTCAGAATGCAAATTTTGCAATCTCAAAGCACTATAGACGGTATGATGTGTTTGAAGAGGCTGAAGCTAACAGAGCTGCTGGGAAGTACGATAATTCCTCCATTAATGAGCAGGTTGACTTCTATATCAAGGAGGGTTTACAACCTTATTCTGAGGCTAAGCTTCCCATAACGAGTGATGTTCCTGAAGGTTGTGTGATCATAAAGGAACACATTCCCATTACAAATTTATTCACCTGTAATTGGTTCAATGAAGTTGATCGTTTTACCTCCAGGGATCAGTTAAGCTTTTCCACAGTGAGGGATAAAATCATGGGAAAAGTTGATTGGAGCATTAATATGTTTTTGGATTGTGAAAGGCGCAACTTTGTAATTCAGGCATACCACAGAGAGTTGCTGGAGCAGATGCCTCCTCCCCGTCCTCCGAGGGCTGTGATTCGTCGTACACCAGCTTTGCCTCGTGGTATCATATCTGTAAAGACTCCACCTGGGAAGAAGCGTGGAAGAGGGGATAAGAAGCGCCATCGGAAGGTTGTTGCTGTTAGTAGAGACAACATGCAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

533

Amino Acids

60.62

Weight (kDa)

9.72

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 189 - 240 2.6e-11 TOD1/MUCI70, glycosyltransferase-like domain
TOD1_MUCI70 PF04765 240 - 473 1.7e-116 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 1135
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 86
AclWI GGATC 4 cut(s) 49, 995, 1008, 1317
AcsI RAATTY 6 cut(s) 394, 424, 620, 823, 1045, 1258
AcuI CTGAAG 5 cut(s) 525, 828, 971, 1116, 1239
AcyI GRCGYC 1 cut(s) 1033
AfaI GTAC 4 cut(s) 28, 555, 1121, 1477
AfiI CCNNNNNNNGG 8 cut(s) 193, 406, 455, 487, 611, 1275, 1332, 1561
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 3 cut(s) 253, 1088, 1282
AjnI CCWGG 4 cut(s) 715, 834, 1304, 1519
AjuI GAANNNNNNNTTGG 4 cut(s) 523, 555, 1342, 1374
Alw26I GTCTC 3 cut(s) 637, 797, 1575
AlwI GGATC 4 cut(s) 49, 995, 1008, 1317
AoxI GGCC 3 cut(s) 184, 337, 408
ApeKI GCWGC 2 cut(s) 739, 1109
ApoI RAATTY 6 cut(s) 394, 424, 620, 823, 1045, 1258
AseI ATTAAT 2 cut(s) 1137, 1368
Asp700I GAANNNNTTC 4 cut(s) 118, 156, 655, 1245
AspLEI GCGC 2 cut(s) 1395, 1554
AspS9I GGNCC 5 cut(s) 184, 409, 473, 685, 1012
AsuHPI GGTGA 2 cut(s) 540, 1258
AvaII GGWCC 3 cut(s) 473, 685, 1012
BamHI GGATCC 1 cut(s) 1000
BauI CACGAG 1 cut(s) 1491
BbvI GCAGC 2 cut(s) 751, 1096
BccI CCATC 4 cut(s) 366, 420, 971, 1563
BciT130I CCWGG 4 cut(s) 717, 836, 1306, 1521
BciVI GTATCC 1 cut(s) 250
BclI TGATCA 1 cut(s) 1230
BcoDI GTCTC 3 cut(s) 637, 797, 1575
BfaI CTAG 2 cut(s) 522, 594
BfmI CTRYAG 4 cut(s) 53, 172, 516, 1066
BfoI RGCGCY 1 cut(s) 1555
BfuAI ACCTGC 1 cut(s) 1135
BfuI GTATCC 1 cut(s) 250
BisI GCNGC 2 cut(s) 740, 1110
BlpI GCTNAGC 1 cut(s) 1191
BlsI GCNGC 2 cut(s) 741, 1111
Bme1390I CCNGG 4 cut(s) 717, 836, 1306, 1521
Bme18I GGWCC 3 cut(s) 473, 685, 1012
BmgT120I GGNCC 5 cut(s) 184, 409, 473, 685, 1012
BmiI GGNNCC 1 cut(s) 1002
BmrFI CCNGG 4 cut(s) 717, 836, 1306, 1521
BmsI GCATC 3 cut(s) 316, 889, 1428
BpmI CTGGAG 3 cut(s) 27, 1288, 1451
Bpu1102I GCTNAGC 1 cut(s) 1191
BpuEI CTTGAG 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 26
BsaBI GATNNNNATC 2 cut(s) 585, 1005
BsaHI GRCGYC 1 cut(s) 1033
BsaJI CCNNGG 5 cut(s) 123, 835, 1305, 1457, 1520
BsaWI WCCGGW 2 cut(s) 29, 487
BsaXI ACNNNNNCTCC 6 cut(s) 82, 85, 112, 115, 337, 367
Bsc4I CCNNNNNNNGG 8 cut(s) 193, 406, 455, 487, 611, 1275, 1332, 1561
Bse1I ACTGG 2 cut(s) 10, 828
Bse3DI GCAATG 1 cut(s) 916
Bse8I GATNNNNATC 2 cut(s) 585, 1005
BseBI CCWGG 4 cut(s) 717, 836, 1306, 1521
BseDI CCNNGG 5 cut(s) 123, 835, 1305, 1457, 1520
BseJI GATNNNNATC 2 cut(s) 585, 1005
BseLI CCNNNNNNNGG 8 cut(s) 193, 406, 455, 487, 611, 1275, 1332, 1561
BseMI GCAATG 1 cut(s) 916
BseMII CTCAG 3 cut(s) 360, 632, 1176
BseNI ACTGG 2 cut(s) 10, 828
BseRI GAGGAG 8 cut(s) 90, 93, 339, 342, 429, 432, 435, 1434
BseXI GCAGC 2 cut(s) 751, 1096
BseYI CCCAGC 1 cut(s) 1112
BsgI GTGCAG 1 cut(s) 920
BshFI GGCC 3 cut(s) 186, 339, 410
BsiSI CCGG 2 cut(s) 30, 488
BslI CCNNNNNNNGG 8 cut(s) 193, 406, 455, 487, 611, 1275, 1332, 1561
BsmAI GTCTC 3 cut(s) 637, 797, 1575
BsmI GAATGC 1 cut(s) 1045
BsnI GGCC 3 cut(s) 186, 339, 410
Bsp143I GATC 5 cut(s) 41, 1000, 1230, 1291, 1309
Bsp1720I GCTNAGC 1 cut(s) 1191
BspACI CCGC 1 cut(s) 86
BspANI GGCC 3 cut(s) 186, 339, 410
BspCNI CTCAG 3 cut(s) 361, 633, 1177
BspLI GGNNCC 1 cut(s) 1002
BspMI ACCTGC 1 cut(s) 1135
BspPI GGATC 4 cut(s) 49, 995, 1008, 1317
BsrDI GCAATG 1 cut(s) 916
BsrI ACTGG 2 cut(s) 10, 828
BssECI CCNNGG 5 cut(s) 123, 835, 1305, 1457, 1520
BssMI GATC 5 cut(s) 41, 1000, 1230, 1291, 1309
BssNI GRCGYC 1 cut(s) 1033
BssSI CACGAG 1 cut(s) 1491
BssT1I CCWWGG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 1491
Bst2UI CCWGG 4 cut(s) 717, 836, 1306, 1521
Bst4CI ACNGT 6 cut(s) 382, 685, 692, 845, 1074, 1330
Bst6I CTCTTC 3 cut(s) 795, 1083, 1531
BstACI GRCGYC 1 cut(s) 1033
BstAPI GCANNNNNTGC 1 cut(s) 1049
BstBAI YACGTR 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 4 cut(s) 369, 641, 1185, 1191
BstH2I RGCGCY 1 cut(s) 1555
BstHHI GCGC 2 cut(s) 1395, 1554
BstKTI GATC 5 cut(s) 44, 1003, 1233, 1294, 1312
BstMAI GTCTC 3 cut(s) 637, 797, 1575
BstMBI GATC 5 cut(s) 41, 1000, 1230, 1291, 1309
BstMWI GCNNNNNNNGC 3 cut(s) 934, 1049, 1106
BstNI CCWGG 4 cut(s) 717, 836, 1306, 1521
BstNSI RCATGY 2 cut(s) 790, 1591
BstSCI CCNGG 4 cut(s) 715, 834, 1304, 1519
BstSFI CTRYAG 4 cut(s) 53, 172, 516, 1066
BstSNI TACGTA 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 751, 1096
BstX2I RGATCY 1 cut(s) 1000
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 1 cut(s) 1000
BsuI GTATCC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 186, 339, 410
BtsIMutI CAGTG 4 cut(s) 688, 835, 894, 1335
BveI ACCTGC 1 cut(s) 1135
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 2 cut(s) 1395, 1554
Cfr13I GGNCC 5 cut(s) 184, 409, 473, 685, 1012
CseI GACGC 2 cut(s) 915, 1022
Csp6I GTAC 4 cut(s) 27, 554, 1120, 1476
CviAII CATG 8 cut(s) 281, 313, 389, 608, 679, 787, 1345, 1588
CviQI GTAC 4 cut(s) 27, 554, 1120, 1476
DdeI CTNAG 4 cut(s) 369, 641, 1185, 1191
DpnI GATC 5 cut(s) 43, 1002, 1232, 1293, 1311
DpnII GATC 5 cut(s) 41, 1000, 1230, 1291, 1309
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 3 cut(s) 795, 1083, 1531
EarI CTCTTC 3 cut(s) 795, 1083, 1531
Eco105I TACGTA 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 339
Eco47I GGWCC 3 cut(s) 473, 685, 1012
Eco57I CTGAAG 5 cut(s) 525, 828, 971, 1116, 1239
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRI GAATTC 1 cut(s) 823
EcoRII CCWGG 4 cut(s) 715, 834, 1304, 1519
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 8 cut(s) 284, 316, 392, 611, 682, 790, 1348, 1591
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FatI CATG 8 cut(s) 280, 312, 388, 607, 678, 786, 1344, 1587
FauNDI CATATG 2 cut(s) 571, 661
FbaI TGATCA 1 cut(s) 1230
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 740, 1110
Fsp4HI GCNGC 2 cut(s) 740, 1110
FspBI CTAG 2 cut(s) 522, 594
GlaI GCGC 2 cut(s) 1394, 1553
GluI GCNGC 2 cut(s) 740, 1110
GsaI CCCAGC 1 cut(s) 1116
GsuI CTGGAG 3 cut(s) 27, 1288, 1451
HaeII RGCGCY 1 cut(s) 1555
HaeIII GGCC 3 cut(s) 186, 339, 410
HapII CCGG 2 cut(s) 30, 488
HgaI GACGC 2 cut(s) 915, 1022
HhaI GCGC 2 cut(s) 1395, 1554
Hin1I GRCGYC 1 cut(s) 1033
Hin1II CATG 8 cut(s) 284, 316, 392, 611, 682, 790, 1348, 1591
Hin6I GCGC 2 cut(s) 1393, 1552
HinP1I GCGC 2 cut(s) 1393, 1552
HincII GTYRAC 1 cut(s) 1150
HindII GTYRAC 1 cut(s) 1150
HindIII AAGCTT 5 cut(s) 810, 926, 983, 1193, 1318
HinfI GANTC 7 cut(s) 371, 545, 656, 674, 919, 1468, 1513
HpaII CCGG 2 cut(s) 30, 488
HphI GGTGA 2 cut(s) 540, 1258
Hpy166II GTNNAC 6 cut(s) 23, 473, 688, 1150, 1172, 1478
Hpy188I TCNGA 8 cut(s) 544, 619, 642, 959, 1038, 1186, 1458, 1560
Hpy188III TCNNGA 1 cut(s) 1217
Hpy8I GTNNAC 6 cut(s) 23, 473, 688, 1150, 1172, 1478
Hpy99I CGWCG 1 cut(s) 1476
HpyAV CCTTC 6 cut(s) 129, 142, 259, 459, 1214, 1555
HpyCH4III ACNGT 6 cut(s) 382, 685, 692, 845, 1074, 1330
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 9 cut(s) 110, 137, 329, 431, 902, 937, 1043, 1052, 1591
HpyF10VI GCNNNNNNNGC 3 cut(s) 934, 1049, 1106
HpyF3I CTNAG 4 cut(s) 369, 641, 1185, 1191
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 1033
Hsp92II CATG 8 cut(s) 284, 316, 392, 611, 682, 790, 1348, 1591
HspAI GCGC 2 cut(s) 1393, 1552
Ksp22I TGATCA 1 cut(s) 1230
Kzo9I GATC 5 cut(s) 41, 1000, 1230, 1291, 1309
LmnI GCTCC 3 cut(s) 508, 1362, 1432
Lsp1109I GCAGC 2 cut(s) 751, 1096
LweI GCATC 3 cut(s) 316, 889, 1428
MaeI CTAG 2 cut(s) 522, 594
MaeII ACGT 1 cut(s) 25
MalI GATC 5 cut(s) 43, 1002, 1232, 1293, 1311
MboI GATC 5 cut(s) 41, 1000, 1230, 1291, 1309
MboII GAAGA 9 cut(s) 284, 353, 528, 531, 812, 832, 1100, 1537, 1548
MflI RGATCY 1 cut(s) 1000
MlyI GAGTC 2 cut(s) 380, 1507
MmeI TCCRAC 1 cut(s) 659
MroXI GAANNNNTTC 4 cut(s) 118, 156, 655, 1245
MseI TTAA 4 cut(s) 288, 1137, 1316, 1368
MslI CAYNNNNRTG 2 cut(s) 417, 1370
MspI CCGG 2 cut(s) 30, 488
MspR9I CCNGG 4 cut(s) 717, 836, 1306, 1521
Mva1269I GAATGC 1 cut(s) 1045
MvaI CCWGG 4 cut(s) 717, 836, 1306, 1521
MwoI GCNNNNNNNGC 3 cut(s) 934, 1049, 1106
NdeI CATATG 2 cut(s) 571, 661
NdeII GATC 5 cut(s) 41, 1000, 1230, 1291, 1309
NlaIII CATG 8 cut(s) 284, 316, 392, 611, 682, 790, 1348, 1591
NlaIV GGNNCC 1 cut(s) 1002
NspI RCATGY 2 cut(s) 790, 1591
PceI AGGCCT 1 cut(s) 339
PciI ACATGT 1 cut(s) 786
PctI GAATGC 1 cut(s) 1045
PdmI GAANNNNTTC 4 cut(s) 118, 156, 655, 1245
PfeI GAWTC 5 cut(s) 545, 656, 674, 919, 1468
PkrI GCNGC 2 cut(s) 741, 1111
PleI GAGTC 2 cut(s) 379, 1507
PpsI GAGTC 2 cut(s) 379, 1507
Ppu21I YACGTR 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 1012
PscI ACATGT 1 cut(s) 786
PshBI ATTAAT 2 cut(s) 1137, 1368
Psp5II RGGWCCY 1 cut(s) 1012
Psp6I CCWGG 4 cut(s) 715, 834, 1304, 1519
PspFI CCCAGC 1 cut(s) 1112
PspGI CCWGG 4 cut(s) 715, 834, 1304, 1519
PspN4I GGNNCC 1 cut(s) 1002
PspPI GGNCC 5 cut(s) 184, 409, 473, 685, 1012
PspPPI RGGWCCY 1 cut(s) 1012
PsrI GAACNNNNNNTAC 2 cut(s) 517, 549
PsuI RGATCY 1 cut(s) 1000
RsaI GTAC 4 cut(s) 28, 555, 1121, 1477
RsaNI GTAC 4 cut(s) 27, 554, 1120, 1476
RseI CAYNNNNRTG 2 cut(s) 417, 1370
SaqAI TTAA 4 cut(s) 288, 1137, 1316, 1368
SatI GCNGC 2 cut(s) 740, 1110
Sau3AI GATC 5 cut(s) 41, 1000, 1230, 1291, 1309
Sau96I GGNCC 5 cut(s) 184, 409, 473, 685, 1012
SchI GAGTC 2 cut(s) 380, 1507
ScrFI CCNGG 4 cut(s) 717, 836, 1306, 1521
SfaNI GCATC 3 cut(s) 316, 889, 1428
SfcI CTRYAG 4 cut(s) 53, 172, 516, 1066
SinI GGWCC 3 cut(s) 473, 685, 1012
SmiMI CAYNNNNRTG 2 cut(s) 417, 1370
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
SnaBI TACGTA 1 cut(s) 26
SseBI AGGCCT 1 cut(s) 339
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 522, 594
StuI AGGCCT 1 cut(s) 339
StyD4I CCNGG 4 cut(s) 715, 834, 1304, 1519
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 6 cut(s) 382, 685, 692, 845, 1074, 1330
TaiI ACGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 460, 764
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 5 cut(s) 545, 656, 674, 919, 1468
Tru1I TTAA 4 cut(s) 288, 1137, 1316, 1368
Tru9I TTAA 4 cut(s) 288, 1137, 1316, 1368
TscAI CASTG 4 cut(s) 695, 835, 901, 1335
TseI GCWGC 2 cut(s) 739, 1109
TspDTI ATGAA 9 cut(s) 329, 353, 377, 441, 597, 648, 813, 833, 1299
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 4 cut(s) 695, 835, 901, 1335
VpaK11BI GGWCC 3 cut(s) 473, 685, 1012
VspI ATTAAT 2 cut(s) 1137, 1368
XapI RAATTY 6 cut(s) 394, 424, 620, 823, 1045, 1258
XceI RCATGY 2 cut(s) 790, 1591
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 4 cut(s) 118, 156, 655, 1245
XspI CTAG 2 cut(s) 522, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.