Rroxscaffold_1G00046460

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003383
Physical Location & Seq
Reverse (-)
65658519 .. 65664331
5813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046460.1

Sequence Viewer

Length: 1485 bp
ATGCTTCTGTTGGTTGTCCTTGCTCTTTTGGTTTTCGTATCCAATTCCTTCAATGTAAATAAAGGAATGGAAGATAAACATGACATTAAAATTACTTCTACACAGAATACCATGAAAGGAAATGATGCAAATAGAGCCCTACTTACTCCTCCTCCCCATCTTCATACTGAGTCATTTACTGTTGTTCATGGAAATTCCCCTCCATTGGCTCATCAATGTGAAAATTTTGCATTTCCTCCTCCTCCTCCTCCATCTGGTCGAAAACGAAGTGGACCTCGCCCGTGTCCAGTATGTTATCTCCCTGTGGAGCAGGCTATAGCTAGTATGCCAAGTTCTTCTTCAGATTCTCCTGTACTACATAATTTGACATATGTTTATGATGAAAATCCCACTAGAACTGAACCACATGGAGGTTCTGAATTTGGTGGATTTCCAACTCTGAGACAGAGAAATGATTCATATGATATAAAAGAATACATGACGGTCCATTGTGGATTTGTGAAAGGCAATAAACCTGGTGACCAGTCTGGATTTGATGTTGATGAAGCTGACCTTGTGGAGTTGGAGACGTCCCATGAGATAATTGTTGCATCAGCTGTCTTTGGAAACTATGACATAATACAGCAGCCAACAAACATTAGTGAGTTTTCGAGGAAAAATGTTCCATTCTACATGTTTATTGATGAAGAGACTGAAGCTTATATGAAAAATTCCAGCGTCCTGGGAAAGAGTAGGAAAGTAGGATTATGGAGAGTTATTGTTGTCCATAATGTTCCTTACACTGATGCAAGACGCAATGGAAAGATTCCAAAGCTTCTATTGCACAGGCTTTTCCCCAATGTCAGATATTCTATATGGATTGATGGAAAGCTTCAGCTTGTTGTGGATCCCTATCAGGTCCTCGAGAGGTTCTTGTGGCGTCAGAATGCAAATTTTGCAATCTCAAAGCACTATAGACGGTATGATGTGTTTGAAGAGGCTGAAGCTAACAAAGCTGCTGGGAAGTACGATAATTCCTCCATTAATGAGCAGGTTGACTTCTATATCAAGGAGGGTTTACAACCTTATTCTGAGGCTAAGCTTCCAATAACGAGTGATGTTCCTGAAGGTTGTGTGATCATAAAGGAACACATTCCCATTACAAATTTATTCACCTGTAATTGGTTCAATGAAGTTGATCGTTTTACCTCCAGGGATCAGTTAAGCTTTTCCACAGTGAGGGATAAAATCATGGGAAAAGTTGATTGGAGCATTAATATGTTTTTGGATTGTGAAAGGCGCAACTTTGTAATTCAGGCATACCACAGAGAGTTGCTGGAGCAGATGCCTCCTCCCCGTCCTCCGAGGGTTGTGATTCGTCGTACACCAGCTTTGCCTCATCGTATCATATCTGTGAAGACTCCACCTGGGAAGAAGCGTGGACGAGGGGATAAGAAGCGCCATCGGAAGGTTGTTGCTGTTAGTAGAGACAACATGCAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616

Protein Analysis

494

Amino Acids

56.44

Weight (kDa)

8.86

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 122 - 435 7.5e-148 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 572
Acc36I ACCTGC 1 cut(s) 1021
AclWI GGATC 3 cut(s) 881, 894, 1203
AcsI RAATTY 6 cut(s) 193, 223, 419, 709, 931, 1144
AcuI CTGAAG 5 cut(s) 324, 714, 857, 1002, 1125
AcyI GRCGYC 2 cut(s) 569, 919
AfaI GTAC 3 cut(s) 354, 1007, 1363
AfiI CCNNNNNNNGG 6 cut(s) 205, 254, 410, 1161, 1218, 1447
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 3 cut(s) 52, 974, 1168
AjnI CCWGG 4 cut(s) 514, 720, 1190, 1405
AjuI GAANNNNNNNTTGG 4 cut(s) 322, 354, 1228, 1260
Alw26I GTCTC 4 cut(s) 436, 560, 683, 1461
AlwI GGATC 3 cut(s) 881, 894, 1203
Ama87I CYCGRG 1 cut(s) 902
ApeKI GCWGC 2 cut(s) 625, 995
ApoI RAATTY 6 cut(s) 193, 223, 419, 709, 931, 1144
AseI ATTAAT 2 cut(s) 1023, 1254
Asp700I GAANNNNTTC 2 cut(s) 454, 1131
AspLEI GCGC 2 cut(s) 1281, 1440
AspS9I GGNCC 3 cut(s) 272, 484, 898
AsuHPI GGTGA 2 cut(s) 530, 1144
AvaI CYCGRG 1 cut(s) 902
AvaII GGWCC 3 cut(s) 272, 484, 898
BamHI GGATCC 1 cut(s) 886
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 1403
BbvI GCAGC 2 cut(s) 637, 982
BccI CCATC 4 cut(s) 165, 259, 857, 1449
BciT130I CCWGG 4 cut(s) 516, 722, 1192, 1407
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 1 cut(s) 1116
BcoDI GTCTC 4 cut(s) 436, 560, 683, 1461
BfaI CTAG 2 cut(s) 321, 393
BfmI CTRYAG 2 cut(s) 315, 952
BfoI RGCGCY 1 cut(s) 1441
BfuAI ACCTGC 1 cut(s) 1021
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 2 cut(s) 626, 996
BlpI GCTNAGC 1 cut(s) 1077
BlsI GCNGC 2 cut(s) 627, 997
Bme1390I CCNGG 4 cut(s) 516, 722, 1192, 1407
Bme18I GGWCC 3 cut(s) 272, 484, 898
BmeT110I CYCGRG 1 cut(s) 902
BmgT120I GGNCC 3 cut(s) 272, 484, 898
BmiI GGNNCC 1 cut(s) 888
BmrFI CCNGG 4 cut(s) 516, 722, 1192, 1407
BmsI GCATC 4 cut(s) 115, 599, 775, 1314
BpiI GAAGAC 1 cut(s) 1403
BpmI CTGGAG 2 cut(s) 1174, 1337
Bpu1102I GCTNAGC 1 cut(s) 1077
BsaBI GATNNNNATC 2 cut(s) 384, 891
BsaHI GRCGYC 2 cut(s) 569, 919
BsaJI CCNNGG 4 cut(s) 721, 1191, 1343, 1406
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 6 cut(s) 205, 254, 410, 1161, 1218, 1447
Bse1I ACTGG 2 cut(s) 287, 523
Bse3DI GCAATG 1 cut(s) 802
Bse8I GATNNNNATC 2 cut(s) 384, 891
BseBI CCWGG 4 cut(s) 516, 722, 1192, 1407
BseDI CCNNGG 4 cut(s) 721, 1191, 1343, 1406
BseJI GATNNNNATC 2 cut(s) 384, 891
BseLI CCNNNNNNNGG 6 cut(s) 205, 254, 410, 1161, 1218, 1447
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 3 cut(s) 159, 431, 1062
BseNI ACTGG 2 cut(s) 287, 523
BseRI GAGGAG 7 cut(s) 138, 141, 228, 231, 234, 237, 1320
BseXI GCAGC 2 cut(s) 637, 982
BseYI CCCAGC 1 cut(s) 998
BsiHKCI CYCGRG 1 cut(s) 902
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 6 cut(s) 205, 254, 410, 1161, 1218, 1447
BsmAI GTCTC 4 cut(s) 436, 560, 683, 1461
BsmBI CGTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 556
BsmI GAATGC 1 cut(s) 931
BsoBI CYCGRG 1 cut(s) 902
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 4 cut(s) 886, 1116, 1177, 1195
Bsp1720I GCTNAGC 1 cut(s) 1077
BspCNI CTCAG 3 cut(s) 160, 432, 1063
BspLI GGNNCC 1 cut(s) 888
BspMI ACCTGC 1 cut(s) 1021
BspPI GGATC 3 cut(s) 881, 894, 1203
BsrDI GCAATG 1 cut(s) 802
BsrI ACTGG 2 cut(s) 287, 523
BssECI CCNNGG 4 cut(s) 721, 1191, 1343, 1406
BssMI GATC 4 cut(s) 886, 1116, 1177, 1195
BssNI GRCGYC 2 cut(s) 569, 919
Bst2UI CCWGG 4 cut(s) 516, 722, 1192, 1407
Bst4CI ACNGT 4 cut(s) 181, 484, 960, 1216
Bst6I CTCTTC 2 cut(s) 681, 969
BstACI GRCGYC 2 cut(s) 569, 919
BstAPI GCANNNNNTGC 1 cut(s) 935
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 168, 440, 1071, 1077
BstEII GGTNACC 1 cut(s) 518
BstH2I RGCGCY 1 cut(s) 1441
BstHHI GCGC 2 cut(s) 1281, 1440
BstKTI GATC 4 cut(s) 889, 1119, 1180, 1198
BstMAI GTCTC 4 cut(s) 436, 560, 683, 1461
BstMBI GATC 4 cut(s) 886, 1116, 1177, 1195
BstMWI GCNNNNNNNGC 4 cut(s) 134, 820, 935, 992
BstNI CCWGG 4 cut(s) 516, 722, 1192, 1407
BstNSI RCATGY 2 cut(s) 676, 1477
BstPI GGTNACC 1 cut(s) 518
BstSCI CCNGG 4 cut(s) 514, 720, 1190, 1405
BstSFI CTRYAG 2 cut(s) 315, 952
BstV1I GCAGC 2 cut(s) 637, 982
BstV2I GAAGAC 1 cut(s) 1403
BstX2I RGATCY 1 cut(s) 886
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 1 cut(s) 886
BsuI GTATCC 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 780, 1221
BveI ACCTGC 1 cut(s) 1021
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 2 cut(s) 1281, 1440
Cfr13I GGNCC 3 cut(s) 272, 484, 898
CseI GACGC 3 cut(s) 706, 801, 908
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 3 cut(s) 353, 1006, 1362
CviAII CATG 9 cut(s) 80, 112, 188, 407, 478, 575, 673, 1231, 1474
CviQI GTAC 3 cut(s) 353, 1006, 1362
DdeI CTNAG 4 cut(s) 168, 440, 1071, 1077
DpnI GATC 4 cut(s) 888, 1118, 1179, 1197
DpnII GATC 4 cut(s) 886, 1116, 1177, 1195
Eam1104I CTCTTC 2 cut(s) 681, 969
EarI CTCTTC 2 cut(s) 681, 969
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 3 cut(s) 272, 484, 898
Eco57I CTGAAG 5 cut(s) 324, 714, 857, 1002, 1125
Eco88I CYCGRG 1 cut(s) 902
Eco91I GGTNACC 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 898
EcoO65I GGTNACC 1 cut(s) 518
EcoRII CCWGG 4 cut(s) 514, 720, 1190, 1405
EcoT38I GRGCYC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 560
FaeI CATG 9 cut(s) 83, 115, 191, 410, 481, 578, 676, 1234, 1477
FalI AAGNNNNNCTT 4 cut(s) 322, 354, 537, 569
FaqI GGGAC 1 cut(s) 556
FatI CATG 9 cut(s) 79, 111, 187, 406, 477, 574, 672, 1230, 1473
FauNDI CATATG 2 cut(s) 370, 460
FbaI TGATCA 1 cut(s) 1116
Fnu4HI GCNGC 2 cut(s) 626, 996
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 626, 996
FspBI CTAG 2 cut(s) 321, 393
GlaI GCGC 2 cut(s) 1280, 1439
GluI GCNGC 2 cut(s) 626, 996
GsaI CCCAGC 1 cut(s) 1002
GsuI CTGGAG 2 cut(s) 1174, 1337
HaeII RGCGCY 1 cut(s) 1441
HgaI GACGC 3 cut(s) 706, 801, 908
HhaI GCGC 2 cut(s) 1281, 1440
Hin1I GRCGYC 2 cut(s) 569, 919
Hin1II CATG 9 cut(s) 83, 115, 191, 410, 481, 578, 676, 1234, 1477
Hin6I GCGC 2 cut(s) 1279, 1438
HinP1I GCGC 2 cut(s) 1279, 1438
HincII GTYRAC 1 cut(s) 1036
HindII GTYRAC 1 cut(s) 1036
HindIII AAGCTT 5 cut(s) 696, 812, 869, 1079, 1204
HinfI GANTC 6 cut(s) 170, 344, 455, 805, 1354, 1399
HphI GGTGA 2 cut(s) 530, 1144
Hpy166II GTNNAC 5 cut(s) 272, 1036, 1058, 1364, 1421
Hpy188I TCNGA 8 cut(s) 343, 418, 441, 845, 924, 1072, 1344, 1446
Hpy188III TCNNGA 3 cut(s) 528, 904, 1103
Hpy8I GTNNAC 5 cut(s) 272, 1036, 1058, 1364, 1421
Hpy99I CGWCG 1 cut(s) 1362
HpyAV CCTTC 3 cut(s) 58, 1100, 1441
HpyCH4III ACNGT 4 cut(s) 181, 484, 960, 1216
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 8 cut(s) 128, 230, 590, 788, 823, 929, 938, 1477
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 820, 935, 992
HpyF3I CTNAG 4 cut(s) 168, 440, 1071, 1077
HpySE526I ACGT 1 cut(s) 569
Hsp92I GRCGYC 2 cut(s) 569, 919
Hsp92II CATG 9 cut(s) 83, 115, 191, 410, 481, 578, 676, 1234, 1477
HspAI GCGC 2 cut(s) 1279, 1438
Ksp22I TGATCA 1 cut(s) 1116
Kzo9I GATC 4 cut(s) 886, 1116, 1177, 1195
LmnI GCTCC 3 cut(s) 307, 1248, 1318
Lsp1109I GCAGC 2 cut(s) 637, 982
LweI GCATC 4 cut(s) 115, 599, 775, 1314
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 2 cut(s) 321, 393
MaeII ACGT 1 cut(s) 569
MaeIII GTNAC 1 cut(s) 518
MalI GATC 4 cut(s) 888, 1118, 1179, 1197
MboI GATC 4 cut(s) 886, 1116, 1177, 1195
MboII GAAGA 8 cut(s) 83, 152, 327, 330, 698, 986, 1408, 1423
MflI RGATCY 1 cut(s) 886
MhlI GDGCHC 1 cut(s) 139
MlyI GAGTC 2 cut(s) 179, 1393
MmeI TCCRAC 2 cut(s) 458, 543
MroXI GAANNNNTTC 2 cut(s) 454, 1131
MseI TTAA 4 cut(s) 87, 1023, 1202, 1254
MslI CAYNNNNRTG 3 cut(s) 216, 1256, 1391
MspA1I CMGCKG 1 cut(s) 596
MspR9I CCNGG 4 cut(s) 516, 722, 1192, 1407
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 4 cut(s) 516, 722, 1192, 1407
MwoI GCNNNNNNNGC 4 cut(s) 134, 820, 935, 992
NdeI CATATG 2 cut(s) 370, 460
NdeII GATC 4 cut(s) 886, 1116, 1177, 1195
NlaIII CATG 9 cut(s) 83, 115, 191, 410, 481, 578, 676, 1234, 1477
NlaIV GGNNCC 1 cut(s) 888
NmuCI GTSAC 1 cut(s) 518
NspI RCATGY 2 cut(s) 676, 1477
PaeR7I CTCGAG 1 cut(s) 902
PciI ACATGT 1 cut(s) 672
PctI GAATGC 1 cut(s) 931
PdmI GAANNNNTTC 2 cut(s) 454, 1131
PfeI GAWTC 4 cut(s) 344, 455, 805, 1354
PkrI GCNGC 2 cut(s) 627, 997
PleI GAGTC 2 cut(s) 178, 1393
PpsI GAGTC 2 cut(s) 178, 1393
PpuMI RGGWCCY 1 cut(s) 898
PscI ACATGT 1 cut(s) 672
PshBI ATTAAT 2 cut(s) 1023, 1254
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 4 cut(s) 514, 720, 1190, 1405
PspEI GGTNACC 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 998
PspGI CCWGG 4 cut(s) 514, 720, 1190, 1405
PspN4I GGNNCC 1 cut(s) 888
PspPI GGNCC 3 cut(s) 272, 484, 898
PspPPI RGGWCCY 1 cut(s) 898
PsrI GAACNNNNNNTAC 2 cut(s) 316, 348
PsuI RGATCY 1 cut(s) 886
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 3 cut(s) 354, 1007, 1363
RsaNI GTAC 3 cut(s) 353, 1006, 1362
RseI CAYNNNNRTG 3 cut(s) 216, 1256, 1391
SaqAI TTAA 4 cut(s) 87, 1023, 1202, 1254
SatI GCNGC 2 cut(s) 626, 996
Sau3AI GATC 4 cut(s) 886, 1116, 1177, 1195
Sau96I GGNCC 3 cut(s) 272, 484, 898
SchI GAGTC 2 cut(s) 179, 1393
ScrFI CCNGG 4 cut(s) 516, 722, 1192, 1407
SduI GDGCHC 1 cut(s) 139
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 4 cut(s) 115, 599, 775, 1314
SfcI CTRYAG 2 cut(s) 315, 952
Sfr274I CTCGAG 1 cut(s) 902
SinI GGWCC 3 cut(s) 272, 484, 898
SlaI CTCGAG 1 cut(s) 902
SmiMI CAYNNNNRTG 3 cut(s) 216, 1256, 1391
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
SspMI CTAG 2 cut(s) 321, 393
StyD4I CCNGG 4 cut(s) 514, 720, 1190, 1405
TaaI ACNGT 4 cut(s) 181, 484, 960, 1216
TaiI ACGT 1 cut(s) 572
TaqI TCGA 3 cut(s) 259, 650, 903
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 4 cut(s) 344, 455, 805, 1354
Tru1I TTAA 4 cut(s) 87, 1023, 1202, 1254
Tru9I TTAA 4 cut(s) 87, 1023, 1202, 1254
TscAI CASTG 2 cut(s) 787, 1221
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 2 cut(s) 625, 995
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 9 cut(s) 128, 152, 176, 396, 447, 558, 699, 719, 1185
TspRI CASTG 2 cut(s) 787, 1221
VpaK11BI GGWCC 3 cut(s) 272, 484, 898
VspI ATTAAT 2 cut(s) 1023, 1254
XapI RAATTY 6 cut(s) 193, 223, 419, 709, 931, 1144
XceI RCATGY 2 cut(s) 676, 1477
XhoI CTCGAG 1 cut(s) 902
XmnI GAANNNNTTC 2 cut(s) 454, 1131
XspI CTAG 2 cut(s) 321, 393
ZraI GACGTC 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.