Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003383

Physical Location & Seq

Genomic Coordinates Forward (+)

27301886 .. 27308088

Gene Structure 6203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGACTGGAGGGTCATTAGGTCTACGTACCGGAAGCTATGGATCACTACAACTACAGCAGATACAGAATGGTTTTCCACCTATTCTGCAGACAACCCCTCCTCCTCTTGCGCGAAAGCCTTCCAAGGTGCTTCTTGCAAGTAGGGAGAAGGAAAGGGTTCTGCCCTTTGTCTGTAGATTTTTGGGCCGAAAAAAGGTCATAATGCTTCTTTTGGTTGTCCTTGCTCTTTTGGTTTTCGTATCCAATTCCTTCAATGTAAATAAAGGAATGGAAGATAAACATGACATTAAAATTACTTCTACACAGAATACCATGAAAGGAAAAGATGCAAATAGAGCCCTACTTACTCCTCCTCCCCATCTTCATACTGAGTCATTTACTGCTGTTCATGGAAATTCCCCTCTATTGGCCCATCAATGTGAAAATTTTGCATTTCCTCCTCCTCCTCCTCCATCTGGTCGAAAACGAAGTGGACCTCGCCCGTGTCCAGTATGTTATCTCCCTGTGGAGCAGGCTATAGCTAGTATGCCAAGTTCTTCTTCAGAATCACCTGTACTACATAATTTGACATATGTTTATGATGAAAATCCCACTAGAACTGAACGACATGGAGGTTCTGAATTTGGTGGATTTCCAACTCTGAGTCAGAGAAATGATTCATATGATATAAAAGAATCCATGACGGTCCACTGTGGATTTGTGAAAGGCAATAAACCTGGTGACCAGTCTGGATTTGATGTTGATGAAGCTGACCTTATGGAGTTGGAGACGTCCCATGAGATAATTGTTGCATCAGCTGTCTTTGGTATTTCCAAGTCTAAGAAATTGTATGATATTTTTTTAATTGCATGCTTTGGTTTGCCTTTTCTGATCGTTGCATCTTTGTTAGGAAACTATGACATAATACAGCAGCCAACAAACATTAGTGGGTTTTCGAGGAAAAATGTTCCATTCTACATGTTTATTGATGAAGAGACTGAAGCTTATATGAAGAATTCCAGTGTCCTGGGAAACAGTAGGAAAGTAGGATTATGGAGAGTTATTGTTGTCCGTAATGTTCCTTACACTGATGCAAGACGCAATGGAAAGATTCCAAAGCTTTTATTGCACAGGCTTTTCCCCAATGTCAGATATTCTATATGGATTGATGGAAAGCTTCAGCTTGTTGTGGATCCTTATCAGGTCCTTGAGAGGTACAATTATTTTCTGATCCTGTTTATTTACGTCCTGTGGTATTGGGAGGTATGCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

417

Amino Acids

46.85

Weight (kDa)

9.08

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOD1_MUCI70	PF04765	189 - 270	1.5e-22	TOD1/MUCI70, glycosyltransferase-like domain
TOD1_MUCI70	PF04765	291 - 399	3.2e-48	TOD1/MUCI70, glycosyltransferase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53040 AT1G53040 AT1G53040 AT1G53040 AT1G53040 AT1G53040
fragaria_vesca	FvH4_3g19940 FvH4_3g19940 FvH4_3g19940 FvH4_3g19940 FvH4_3g19940 FvH4_3g19940 FvH4_3g19940
malus_domestica	MD03G1227800.v1.1
prunus_persica	Prupe.4G181200_v2.0.a1 Prupe.4G181200_v2.0.a1 Prupe.4G181200_v2.0.a1 Prupe.4G181200_v2.0.a1 Prupe.4G181200_v2.0.a1 Prupe.4G181200_v2.0.a1 Prupe.4G181200_v2.0.a1 Prupe.4G181200_v2.0.a1
pyrus_communis	pycom03g17520
rosa_chinensis	RchiOBHm_Chr5g0033621
rosa_laevigata	RLG00000033494
rosa_multiflora	Rmu_sc0001768.1_g000021
rosa_roxburghii	Rroxscaffold_1G00046460
rosa_rugosa	Rorug05G0141200 Rorug05G0141300 Rorug05G0141400
rosa_samantha	Rh5AG232300 Rh5BG233000 Rh5CG261900 Rh5DG238600
rosa_wichuraiana	Rw5G021200 Rw5G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AatII	GACGTC	1 cut(s)	773
AccI	GTMKAC	1 cut(s)	22
AccII	CGCG	1 cut(s)	112
AclWI	GGATC	4 cut(s)	49, 1166, 1179, 1204
AcsI	RAATTY	4 cut(s)	394, 424, 620, 994
AcuI	CTGAAG	3 cut(s)	525, 999, 1142
AcyI	GRCGYC	1 cut(s)	770
AfaI	GTAC	3 cut(s)	28, 555, 1196
AfiI	CCNNNNNNNGG	3 cut(s)	193, 406, 455
AflIII	ACRYGT	1 cut(s)	957
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	715, 1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	523, 555
AluBI	AGCT	8 cut(s)	36, 521, 749, 797, 983, 1099, 1156, 1162
AluI	AGCT	8 cut(s)	36, 521, 749, 797, 983, 1099, 1156, 1162
Alw26I	GTCTC	2 cut(s)	761, 968
AlwI	GGATC	4 cut(s)	49, 1166, 1179, 1204
AoxI	GGCC	2 cut(s)	184, 408
ApeKI	GCWGC	1 cut(s)	910
ApoI	RAATTY	4 cut(s)	394, 424, 620, 994
Asp700I	GAANNNNTTC	3 cut(s)	118, 156, 655
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	5 cut(s)	184, 409, 473, 685, 1183
AsuHPI	GGTGA	2 cut(s)	540, 731
AvaII	GGWCC	3 cut(s)	473, 685, 1183
BamHI	GGATCC	1 cut(s)	1171
BanII	GRGCYC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	922
BccI	CCATC	4 cut(s)	366, 420, 460, 1142
BciT130I	CCWGG	2 cut(s)	717, 1007
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	761, 968
BfaI	CTAG	2 cut(s)	522, 594
BfmI	CTRYAG	5 cut(s)	53, 86, 172, 516, 1250
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	911
BlsI	GCNGC	1 cut(s)	912
Bme1390I	CCNGG	2 cut(s)	717, 1007
Bme18I	GGWCC	3 cut(s)	473, 685, 1183
BmgT120I	GGNCC	5 cut(s)	184, 409, 473, 685, 1183
BmiI	GGNNCC	1 cut(s)	1173
BmrFI	CCNGG	2 cut(s)	717, 1007
BmsI	GCATC	4 cut(s)	316, 800, 887, 1060
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	1208
BsaAI	YACGTR	1 cut(s)	26
BsaBI	GATNNNNATC	2 cut(s)	585, 1176
BsaHI	GRCGYC	1 cut(s)	770
BsaJI	CCNNGG	2 cut(s)	123, 1006
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	6 cut(s)	82, 85, 112, 115, 337, 367
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 406, 455
Bse1I	ACTGG	4 cut(s)	10, 488, 724, 999
Bse3DI	GCAATG	1 cut(s)	1087
Bse8I	GATNNNNATC	2 cut(s)	585, 1176
BseBI	CCWGG	2 cut(s)	717, 1007
BseDI	CCNNGG	2 cut(s)	123, 1006
BseJI	GATNNNNATC	2 cut(s)	585, 1176
BseLI	CCNNNNNNNGG	3 cut(s)	193, 406, 455
BseMI	GCAATG	1 cut(s)	1087
BseMII	CTCAG	2 cut(s)	360, 632
BseNI	ACTGG	4 cut(s)	10, 488, 724, 999
BseRI	GAGGAG	8 cut(s)	90, 93, 339, 342, 429, 432, 435, 438
BseXI	GCAGC	1 cut(s)	922
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	186, 410
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	3 cut(s)	193, 406, 455
BsmAI	GTCTC	2 cut(s)	761, 968
BsmBI	CGTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	2 cut(s)	186, 410
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	41, 870, 1171, 1209
BspANI	GGCC	2 cut(s)	186, 410
BspCNI	CTCAG	2 cut(s)	361, 633
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	1173
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	4 cut(s)	49, 1166, 1179, 1204
BsrDI	GCAATG	1 cut(s)	1087
BsrI	ACTGG	4 cut(s)	10, 488, 724, 999
BssECI	CCNNGG	2 cut(s)	123, 1006
BssMI	GATC	4 cut(s)	41, 870, 1171, 1209
BssNI	GRCGYC	1 cut(s)	770
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	717, 1007
Bst4CI	ACNGT	3 cut(s)	685, 692, 1016
Bst6I	CTCTTC	1 cut(s)	966
BstACI	GRCGYC	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	513, 850
BstDEI	CTNAG	3 cut(s)	369, 641, 819
BstEII	GGTNACC	1 cut(s)	719
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	4 cut(s)	44, 873, 1174, 1212
BstMAI	GTCTC	2 cut(s)	761, 968
BstMBI	GATC	4 cut(s)	41, 870, 1171, 1209
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 1105
BstNI	CCWGG	2 cut(s)	717, 1007
BstNSI	RCATGY	2 cut(s)	852, 961
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	2 cut(s)	715, 1005
BstSFI	CTRYAG	5 cut(s)	53, 86, 172, 516, 1250
BstSNI	TACGTA	1 cut(s)	26
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	922
BstX2I	RGATCY	1 cut(s)	1171
BstXI	CCANNNNNNTGG	1 cut(s)	1006
BstYI	RGATCY	1 cut(s)	1171
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	186, 410
BtsIMutI	CAGTG	3 cut(s)	688, 1006, 1065
Cac8I	GCNNGC	2 cut(s)	513, 850
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	5 cut(s)	184, 409, 473, 685, 1183
CseI	GACGC	1 cut(s)	1086
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	3 cut(s)	27, 554, 1195
CviAII	CATG	8 cut(s)	281, 313, 389, 608, 679, 776, 849, 958
CviQI	GTAC	3 cut(s)	27, 554, 1195
DdeI	CTNAG	3 cut(s)	369, 641, 819
DpnI	GATC	4 cut(s)	43, 872, 1173, 1211
DpnII	GATC	4 cut(s)	41, 870, 1171, 1209
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
Eco105I	TACGTA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	3 cut(s)	473, 685, 1183
Eco57I	CTGAAG	3 cut(s)	525, 999, 1142
Eco91I	GGTNACC	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	1183
EcoO65I	GGTNACC	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	994
EcoRII	CCWGG	2 cut(s)	715, 1005
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	761
FaeI	CATG	8 cut(s)	284, 316, 392, 611, 682, 779, 852, 961
FalI	AAGNNNNNCTT	4 cut(s)	523, 555, 738, 770
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	8 cut(s)	280, 312, 388, 607, 678, 775, 848, 957
FauNDI	CATATG	2 cut(s)	571, 661
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	911
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	911
FspBI	CTAG	2 cut(s)	522, 594
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	911
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	186, 410
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	1086
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	770
Hin1II	CATG	8 cut(s)	284, 316, 392, 611, 682, 779, 852, 961
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HindIII	AAGCTT	3 cut(s)	981, 1097, 1154
HinfI	GANTC	6 cut(s)	371, 545, 643, 656, 674, 1090
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	540, 731
Hpy166II	GTNNAC	3 cut(s)	23, 473, 688
Hpy188I	TCNGA	7 cut(s)	544, 619, 642, 648, 870, 1130, 1209
Hpy188III	TCNNGA	1 cut(s)	729
Hpy8I	GTNNAC	3 cut(s)	23, 473, 688
HpyAV	CCTTC	3 cut(s)	129, 142, 259
HpyCH4III	ACNGT	3 cut(s)	685, 692, 1016
HpyCH4IV	ACGT	3 cut(s)	25, 770, 1224
HpyCH4V	TGCA	9 cut(s)	88, 137, 329, 431, 791, 848, 878, 1073, 1108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 1105
HpyF3I	CTNAG	3 cut(s)	369, 641, 819
HpySE526I	ACGT	3 cut(s)	25, 770, 1224
Hsp92I	GRCGYC	1 cut(s)	770
Hsp92II	CATG	8 cut(s)	284, 316, 392, 611, 682, 779, 852, 961
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	4 cut(s)	41, 870, 1171, 1209
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	1 cut(s)	922
LweI	GCATC	4 cut(s)	316, 800, 887, 1060
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	2 cut(s)	522, 594
MaeII	ACGT	3 cut(s)	25, 770, 1224
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	4 cut(s)	43, 872, 1173, 1211
MboI	GATC	4 cut(s)	41, 870, 1171, 1209
MboII	GAAGA	6 cut(s)	284, 353, 528, 531, 983, 1003
MflI	RGATCY	1 cut(s)	1171
MhlI	GDGCHC	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	380, 652
MmeI	TCCRAC	2 cut(s)	659, 744
MroXI	GAANNNNTTC	3 cut(s)	118, 156, 655
MseI	TTAA	2 cut(s)	288, 842
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	717, 1007
MvaI	CCWGG	2 cut(s)	717, 1007
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	335, 1105
NdeI	CATATG	2 cut(s)	571, 661
NdeII	GATC	4 cut(s)	41, 870, 1171, 1209
NlaIII	CATG	8 cut(s)	284, 316, 392, 611, 682, 779, 852, 961
NlaIV	GGNNCC	1 cut(s)	1173
NmuCI	GTSAC	1 cut(s)	719
NspI	RCATGY	2 cut(s)	852, 961
PaeI	GCATGC	1 cut(s)	852
PciI	ACATGT	1 cut(s)	957
PdmI	GAANNNNTTC	3 cut(s)	118, 156, 655
PfeI	GAWTC	4 cut(s)	545, 656, 674, 1090
PkrI	GCNGC	1 cut(s)	912
PleI	GAGTC	2 cut(s)	379, 651
PpsI	GAGTC	2 cut(s)	379, 651
Ppu21I	YACGTR	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	1183
PscI	ACATGT	1 cut(s)	957
Psp5II	RGGWCCY	1 cut(s)	1183
Psp6I	CCWGG	2 cut(s)	715, 1005
PspEI	GGTNACC	1 cut(s)	719
PspGI	CCWGG	2 cut(s)	715, 1005
PspN4I	GGNNCC	1 cut(s)	1173
PspPI	GGNCC	5 cut(s)	184, 409, 473, 685, 1183
PspPPI	RGGWCCY	1 cut(s)	1183
PsrI	GAACNNNNNNTAC	2 cut(s)	517, 549
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	1171
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	3 cut(s)	28, 555, 1196
RsaNI	GTAC	3 cut(s)	27, 554, 1195
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	288, 842
SatI	GCNGC	1 cut(s)	911
Sau3AI	GATC	4 cut(s)	41, 870, 1171, 1209
Sau96I	GGNCC	5 cut(s)	184, 409, 473, 685, 1183
SchI	GAGTC	2 cut(s)	380, 652
ScrFI	CCNGG	2 cut(s)	717, 1007
SduI	GDGCHC	1 cut(s)	340
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	4 cut(s)	316, 800, 887, 1060
SfcI	CTRYAG	5 cut(s)	53, 86, 172, 516, 1250
SinI	GGWCC	3 cut(s)	473, 685, 1183
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	1187
SmoI	CTYRAG	1 cut(s)	1187
SnaBI	TACGTA	1 cut(s)	26
SphI	GCATGC	1 cut(s)	852
SspMI	CTAG	2 cut(s)	522, 594
StyD4I	CCNGG	2 cut(s)	715, 1005
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	685, 692, 1016
TaiI	ACGT	3 cut(s)	28, 773, 1227
TaqI	TCGA	2 cut(s)	460, 935
TatI	WGTACW	1 cut(s)	553
TfiI	GAWTC	4 cut(s)	545, 656, 674, 1090
Tru1I	TTAA	2 cut(s)	288, 842
Tru9I	TTAA	2 cut(s)	288, 842
TscAI	CASTG	3 cut(s)	695, 1006, 1072
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	1 cut(s)	910
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	8 cut(s)	329, 353, 377, 597, 648, 759, 984, 1004
TspGWI	ACGGA	1 cut(s)	1040
TspRI	CASTG	3 cut(s)	695, 1006, 1072
VpaK11BI	GGWCC	3 cut(s)	473, 685, 1183
XapI	RAATTY	4 cut(s)	394, 424, 620, 994
XceI	RCATGY	2 cut(s)	852, 961
XmiI	GTMKAC	1 cut(s)	22
XmnI	GAANNNNTTC	3 cut(s)	118, 156, 655
XspI	CTAG	2 cut(s)	522, 594
ZraI	GACGTC	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.