RLG00000034255

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019500
Physical Location & Seq
Forward (+)
39456688 .. 39458678
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034255

Sequence Viewer

Length: 330 bp
ATGGCGAAGAAAGTGGCGGAGGCAGAGAGATTGATAGAGAAGGGAATCGTGTACTGCCAGATTGAGTGGAGCTTCAGCCATTTCTTCAGGAAAGAACTCACACCCGAGTTCCTAGGAGCCGGAATAGCTTATAAGAACGACGTCACCGACAAAGGCAGCTCTAATGAGGCCTCTAAAGCTTTTCATCGCCGCCTCTCTTCTTCTTCATCACCGTCGTCGTCTTCGTCGAGACGGGAAGAGTTGGCGAAACAAGGGTTGATGGGACCGGACCGACCGACCACACTGTGGAGGAGGGAGCAGCGACCTCTTGCATCACGGAGATCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.35

Weight (kDa)

10.0

Isoelectric Point (pI)

75.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019500)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034255
rosa_multiflora Rmu_sc0001290.1_g000012
rosa_roxburghii Rroxscaffold_5G00365510
rosa_samantha Rh2CG249500 Rh4DG246000 Rh5CG119600 Rh5DG106400 Rh5DG246900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AatII GACGTC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 285
AciI CCGC 2 cut(s) 17, 190
AcuI CTGAAG 2 cut(s) 58, 70
AcyI GRCGYC 1 cut(s) 141
AdeI CACNNNGTG 1 cut(s) 285
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 285
AluBI AGCT 4 cut(s) 72, 128, 159, 179
AluI AGCT 4 cut(s) 72, 128, 159, 179
Alw26I GTCTC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 156, 298
AspA2I CCTAGG 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 263, 268
AsuHPI GGTGA 2 cut(s) 136, 201
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 263, 268
AvrII CCTAGG 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 168, 310
BccI CCATC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 113
BglII AGATCT 1 cut(s) 320
BisI GCNGC 3 cut(s) 157, 190, 299
BlnI CCTAGG 1 cut(s) 112
BlsI GCNGC 3 cut(s) 158, 191, 300
Bme18I GGWCC 2 cut(s) 263, 268
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 263, 268
BmiI GGNNCC 2 cut(s) 118, 264
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 2 cut(s) 168, 310
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 2 cut(s) 120, 266
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 223
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 1 cut(s) 320
BspACI CCGC 2 cut(s) 17, 190
BspANI GGCC 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 118, 264
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 320
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 213, 285
Bst6I CTCTTC 2 cut(s) 202, 231
BstACI GRCGYC 1 cut(s) 141
BstKTI GATC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 1 cut(s) 320
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 2 cut(s) 125, 176
BstV1I GCAGC 2 cut(s) 168, 310
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 1 cut(s) 170
BtgZI GCGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 263, 268
CpoI CGGWCCG 1 cut(s) 268
Csp6I GTAC 1 cut(s) 52
CspI CGGWCCG 1 cut(s) 268
CviAII CATG 1 cut(s) 327
CviJI RGCY 7 cut(s) 72, 78, 119, 128, 159, 170, 179
CviKI_1 RGCY 7 cut(s) 72, 78, 119, 128, 159, 170, 179
CviQI GTAC 1 cut(s) 52
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
DraIII CACNNNGTG 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 202, 231
EarI CTCTTC 2 cut(s) 202, 231
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 263, 268
Eco57I CTGAAG 2 cut(s) 58, 70
Eco88I CYCGRG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 1 cut(s) 330
FaiI YATR 2 cut(s) 132, 328
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 326
Fnu4HI GCNGC 3 cut(s) 157, 190, 299
Fsp4HI GCNGC 3 cut(s) 157, 190, 299
FspBI CTAG 1 cut(s) 113
GluI GCNGC 3 cut(s) 157, 190, 299
HaeIII GGCC 1 cut(s) 170
HapII CCGG 2 cut(s) 120, 266
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 1 cut(s) 45
HpaII CCGG 2 cut(s) 120, 266
HphI GGTGA 2 cut(s) 136, 201
Hpy166II GTNNAC 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 88, 228
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 4 cut(s) 143, 217, 220, 229
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 213, 285
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 176
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 330
Kzo9I GATC 1 cut(s) 320
LmnI GCTCC 3 cut(s) 69, 116, 295
LpnPI CCDG 4 cut(s) 71, 73, 133, 279
Lsp1109I GCAGC 2 cut(s) 168, 310
LweI GCATC 1 cut(s) 320
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MboII GAAGA 7 cut(s) 19, 76, 189, 192, 195, 213, 248
MflI RGATCY 1 cut(s) 320
MnlI CCTC 7 cut(s) 13, 160, 181, 203, 282, 285, 315
MspI CCGG 2 cut(s) 120, 266
MwoI GCNNNNNNNGC 2 cut(s) 125, 176
NdeII GATC 1 cut(s) 320
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 2 cut(s) 118, 264
NmuCI GTSAC 1 cut(s) 142
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 221, 224
PfeI GAWTC 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 3 cut(s) 158, 191, 300
PsiI TTATAA 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 118, 264
PspPI GGNCC 2 cut(s) 263, 268
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
Rsr2I CGGWCCG 1 cut(s) 268
RsrII CGGWCCG 1 cut(s) 268
SatI GCNGC 3 cut(s) 157, 190, 299
Sau3AI GATC 1 cut(s) 320
Sau96I GGNCC 2 cut(s) 263, 268
SetI ASST 6 cut(s) 74, 130, 144, 161, 181, 307
SfaNI GCATC 1 cut(s) 320
SinI GGWCC 2 cut(s) 263, 268
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 2 cut(s) 17, 190
SspMI CTAG 1 cut(s) 113
StuI AGGCCT 1 cut(s) 170
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 213, 285
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 227
TaqII GACCGA 2 cut(s) 285, 289
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 45
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 156, 298
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 173, 195
TspRI CASTG 1 cut(s) 288
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 2 cut(s) 263, 268
XmaJI CCTAGG 1 cut(s) 112
XspI CTAG 1 cut(s) 113
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.