Rh5DG246900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019500
Physical Location & Seq
Reverse (-)
28227267 .. 28227527
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG246900.1

Sequence Viewer

Length: 261 bp
ATGGCTCTCCTACCGGAAACTAAACCGGAGCTCACACCCGAGTTCCTGGGTGCCAGAATAGCTGATAAGAACGACATCACTGACAAAGGCAGCGCCGGTGAGACTCTAAAGCTTTTCGTCACCGCCTCTCTTCTTCATCATCGTCGTCATCTTCGTCCAAAAGGGAGCAGCAATTTCCTGCATCACGGACATTTCCATGACGCCGAGATCTCCATCCCCAACAGGCCGCAGATGATGGTCGTCCGGCGCAGATGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.92

Weight (kDa)

10.14

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019500)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034255
rosa_multiflora Rmu_sc0001290.1_g000012
rosa_roxburghii Rroxscaffold_5G00365510
rosa_samantha Rh2CG249500 Rh4DG246000 Rh5CG119600 Rh5DG106400 Rh5DG246900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 2 cut(s) 123, 227
AcyI GRCGYC 1 cut(s) 201
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 3 cut(s) 31, 62, 112
AluI AGCT 3 cut(s) 31, 62, 112
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 90, 168
AspLEI GCGC 2 cut(s) 95, 249
AsuHPI GGTGA 2 cut(s) 110, 112
AvaI CYCGRG 1 cut(s) 38
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 102, 180
BccI CCATC 3 cut(s) 221, 229, 246
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 96
BglII AGATCT 1 cut(s) 207
BisI GCNGC 3 cut(s) 91, 169, 227
BlsI GCNGC 3 cut(s) 92, 170, 228
Bme1390I CCNGG 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 2 cut(s) 13, 25
Bse118I RCCGGY 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 212
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 213
BseJI GATNNNNATC 1 cut(s) 212
BseXI GCAGC 2 cut(s) 102, 180
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 4 cut(s) 14, 26, 96, 244
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 2 cut(s) 123, 227
BspANI GGCC 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 207
BssNI GRCGYC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 201
BstF5I GGATG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 249
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 102, 180
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 2 cut(s) 95, 249
Cfr10I RCCGGY 1 cut(s) 95
CseI GACGC 1 cut(s) 209
CviAII CATG 1 cut(s) 197
CviJI RGCY 5 cut(s) 5, 31, 62, 112, 226
CviKI_1 RGCY 5 cut(s) 5, 31, 62, 112, 226
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 1 cut(s) 200
FaiI YATR 1 cut(s) 198
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 91, 169, 227
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 3 cut(s) 91, 169, 227
GlaI GCGC 2 cut(s) 94, 248
GluI GCNGC 3 cut(s) 91, 169, 227
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 226
HapII CCGG 4 cut(s) 14, 26, 96, 244
HgaI GACGC 1 cut(s) 209
HhaI GCGC 2 cut(s) 95, 249
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 2 cut(s) 93, 247
HinP1I GCGC 2 cut(s) 93, 247
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 103
HpaII CCGG 4 cut(s) 14, 26, 96, 244
HphI GGTGA 2 cut(s) 110, 112
Hpy99I CGWCG 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 2 cut(s) 93, 247
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 28, 165
LpnPI CCDG 9 cut(s) 27, 32, 39, 59, 67, 109, 191, 208, 257
Lsp1109I GCAGC 2 cut(s) 102, 180
LweI GCATC 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 3 cut(s) 122, 125, 143
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 1 cut(s) 136
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 4 cut(s) 14, 26, 96, 244
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 52
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PkrI GCNGC 3 cut(s) 92, 170, 228
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 33
SatI GCNGC 3 cut(s) 91, 169, 227
Sau3AI GATC 1 cut(s) 207
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 33
SetI ASST 3 cut(s) 33, 64, 114
SfaNI GCATC 1 cut(s) 190
SgrAI CRCCGGYG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 1 cut(s) 172
SsiI CCGC 2 cut(s) 123, 227
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 45
TasI AATT 1 cut(s) 172
TauI GCSGC 1 cut(s) 229
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 90, 168
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.