Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001290.1

Orthogroup ID

OG0019500

Physical Location & Seq

Genomic Coordinates Reverse (-)

50551 .. 55759

Gene Structure 5209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001290.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atggctctcctaccggaaactaaaccggaactcacacctgagttcctaggcgccggaatagctgataagaacgacgtcaccgacaaaggcagcgccgcgtgctctctattggcgtttaccgctcaacttccaaaaccactacggcttaatcttttgtgttcatgtacctttatttatgaggcttttgaggagcttggtctggcagatgtagggttttacttgaatgtgaagttttgccacgagtgtaccccacacataatccaggccacgctgactagcgccatcgataacaagaaaccccataccaaacaagagaacaaggttcaaaattttggcacttcacctaatgcttccttggcactttgggcgaacatcgggttgcagggacccgaacaccggcccaaaacaaacctaatagataatgagttacgattaggggtggctcaaattgccgaacctaccgcaatcgaccggaaaccggtggtgtcggcgccgacaattatgtggattggtacagtagtgccgtaccgaagtaaaatcccaatcggtactcagctccaaagctttgatccctctacttatgcagaaaatcctcaactttgtggacttccactacagaagacctgccctacaggggaaacaaggtccaaactagttcctaaagaagaagaggatgagcttatatcattcggattttatgtcagcatggggcttgggtttgctgttggattttggggagtttgtggcagtttgatattcaaccggtcatggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

258

Amino Acids

28.23

Weight (kDa)

5.63

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019500)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034255
rosa_multiflora	Rmu_sc0001290.1_g000012
rosa_roxburghii	Rroxscaffold_5G00365510
rosa_samantha	Rh2CG249500 Rh4DG246000 Rh5CG119600 Rh5DG106400 Rh5DG246900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	632
AccB1I	GGYRCC	2 cut(s)	50, 490
AccBSI	CCGCTC	1 cut(s)	122
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	96, 120, 462
AclWI	GGATC	1 cut(s)	563
AcsI	RAATTY	1 cut(s)	328
AcyI	GRCGYC	3 cut(s)	51, 75, 491
AfaI	GTAC	5 cut(s)	166, 247, 514, 527, 550
AfiI	CCNNNNNNNGG	3 cut(s)	396, 478, 634
AgeI	ACCGGT	2 cut(s)	478, 762
AgsI	TTSAA	3 cut(s)	223, 326, 760
AhlI	ACTAGT	1 cut(s)	652
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	62, 193, 556, 564, 679
AluI	AGCT	5 cut(s)	62, 193, 556, 564, 679
Alw21I	GWGCWC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	563
AoxI	GGCC	2 cut(s)	264, 398
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	328
AsiGI	ACCGGT	2 cut(s)	478, 762
AspA2I	CCTAGG	1 cut(s)	46
AspLEI	GCGC	4 cut(s)	53, 95, 281, 493
AspS9I	GGNCC	3 cut(s)	386, 399, 645
AsuHPI	GGTGA	2 cut(s)	70, 333
AvaII	GGWCC	2 cut(s)	386, 645
AvrII	CCTAGG	1 cut(s)	46
BaeI	ACNNNNGTAYC	4 cut(s)	229, 262, 504, 537
BanI	GGYRCC	2 cut(s)	50, 490
BauI	CACGAG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	2 cut(s)	158, 508
BciT130I	CCWGG	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	652
BfaI	CTAG	3 cut(s)	47, 276, 653
BfmI	CTRYAG	2 cut(s)	614, 630
BfoI	RGCGCY	4 cut(s)	54, 96, 282, 494
BfuAI	ACCTGC	1 cut(s)	632
BisI	GCNGC	2 cut(s)	91, 96
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	2 cut(s)	92, 97
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	386, 645
BmgT120I	GGNCC	3 cut(s)	386, 399, 645
BmiI	GGNNCC	4 cut(s)	52, 387, 388, 492
BmrFI	CCNGG	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	626
Bsa29I	ATCGAT	1 cut(s)	285
BsaHI	GRCGYC	3 cut(s)	51, 75, 491
BsaJI	CCNNGG	2 cut(s)	46, 354
BsaWI	WCCGGW	5 cut(s)	13, 25, 471, 478, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 478, 634
Bse118I	RCCGGY	3 cut(s)	396, 478, 762
BseBI	CCWGG	1 cut(s)	263
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	46, 354
BseGI	GGATG	2 cut(s)	679, 777
BseLI	CCNNNNNNNGG	3 cut(s)	396, 478, 634
BseMII	CTCAG	2 cut(s)	30, 566
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	2 cut(s)	266, 400
BshNI	GGYRCC	2 cut(s)	50, 490
BshTI	ACCGGT	2 cut(s)	478, 762
BshVI	ATCGAT	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	7 cut(s)	14, 26, 54, 397, 472, 479, 763
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	3 cut(s)	396, 478, 634
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	2 cut(s)	266, 400
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	568
BspACI	CCGC	3 cut(s)	96, 120, 462
BspANI	GGCC	2 cut(s)	266, 400
BspCNI	CTCAG	2 cut(s)	31, 565
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	4 cut(s)	52, 387, 388, 492
BspMI	ACCTGC	1 cut(s)	632
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	2 cut(s)	50, 490
BsrBI	CCGCTC	1 cut(s)	122
BsrFI	RCCGGY	3 cut(s)	396, 478, 762
BssAI	RCCGGY	3 cut(s)	396, 478, 762
BssECI	CCNNGG	2 cut(s)	46, 354
BssMI	GATC	1 cut(s)	568
BssNI	GRCGYC	3 cut(s)	51, 75, 491
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	46, 354
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	663
BstACI	GRCGYC	3 cut(s)	51, 75, 491
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	39, 552
BstF5I	GGATG	2 cut(s)	679, 777
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	4 cut(s)	54, 96, 282, 494
BstHHI	GCGC	4 cut(s)	53, 95, 281, 493
BstKTI	GATC	1 cut(s)	571
BstMBI	GATC	1 cut(s)	568
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 99, 119, 356, 365, 449
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	2 cut(s)	614, 630
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	626
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	266, 400
BsuTUI	ATCGAT	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	679, 777
BveI	ACCTGC	1 cut(s)	632
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	4 cut(s)	53, 95, 281, 493
Cfr10I	RCCGGY	3 cut(s)	396, 478, 762
Cfr13I	GGNCC	3 cut(s)	386, 399, 645
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	5 cut(s)	165, 246, 513, 526, 549
CspAI	ACCGGT	2 cut(s)	478, 762
CviAII	CATG	3 cut(s)	162, 706, 768
CviQI	GTAC	5 cut(s)	165, 246, 513, 526, 549
DdeI	CTNAG	2 cut(s)	39, 552
DinI	GGCGCC	2 cut(s)	52, 492
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Eco130I	CCWWGG	2 cut(s)	46, 354
Eco47I	GGWCC	2 cut(s)	386, 645
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	46, 354
EgeI	GGCGCC	2 cut(s)	52, 492
EheI	GGCGCC	2 cut(s)	52, 492
ErhI	CCWWGG	2 cut(s)	46, 354
FaeI	CATG	3 cut(s)	165, 709, 771
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	3 cut(s)	161, 705, 767
Fnu4HI	GCNGC	2 cut(s)	91, 96
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	2 cut(s)	91, 96
FspBI	CTAG	3 cut(s)	47, 276, 653
GlaI	GCGC	4 cut(s)	52, 94, 280, 492
GluI	GCNGC	2 cut(s)	91, 96
HaeII	RGCGCY	4 cut(s)	54, 96, 282, 494
HaeIII	GGCC	2 cut(s)	266, 400
HapII	CCGG	7 cut(s)	14, 26, 54, 397, 472, 479, 763
HhaI	GCGC	4 cut(s)	53, 95, 281, 493
Hin1I	GRCGYC	3 cut(s)	51, 75, 491
Hin1II	CATG	3 cut(s)	165, 709, 771
Hin6I	GCGC	4 cut(s)	51, 93, 279, 491
HinP1I	GCGC	4 cut(s)	51, 93, 279, 491
HindIII	AAGCTT	1 cut(s)	562
HpaII	CCGG	7 cut(s)	14, 26, 54, 397, 472, 479, 763
HphI	GGTGA	2 cut(s)	70, 333
Hpy166II	GTNNAC	3 cut(s)	117, 246, 605
Hpy188I	TCNGA	1 cut(s)	692
Hpy8I	GTNNAC	3 cut(s)	117, 246, 605
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	382, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 99, 119, 356, 365, 449
HpyF3I	CTNAG	2 cut(s)	39, 552
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	3 cut(s)	51, 75, 491
Hsp92II	CATG	3 cut(s)	165, 709, 771
HspAI	GCGC	4 cut(s)	51, 93, 279, 491
KasI	GGCGCC	2 cut(s)	50, 490
KflI	GGGWCCC	1 cut(s)	386
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	2 cut(s)	190, 561
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	3 cut(s)	47, 276, 653
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	76, 426
MalI	GATC	1 cut(s)	570
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	1 cut(s)	568
MboII	GAAGA	3 cut(s)	631, 677, 680
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	3 cut(s)	328, 447, 498
Mly113I	GGCGCC	2 cut(s)	51, 491
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	5 cut(s)	172, 181, 583, 603, 664
MseI	TTAA	1 cut(s)	147
MspI	CCGG	7 cut(s)	14, 26, 54, 397, 472, 479, 763
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	6 cut(s)	59, 99, 119, 356, 365, 449
NarI	GGCGCC	2 cut(s)	51, 491
NdeII	GATC	1 cut(s)	568
NlaIII	CATG	3 cut(s)	165, 709, 771
NlaIV	GGNNCC	4 cut(s)	52, 387, 388, 492
NmuCI	GTSAC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PinAI	ACCGGT	2 cut(s)	478, 762
PkrI	GCNGC	2 cut(s)	92, 97
PluTI	GGCGCC	2 cut(s)	54, 494
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	52, 387, 388, 492
PspPI	GGNCC	3 cut(s)	386, 399, 645
PspPPI	RGGWCCY	1 cut(s)	386
RsaI	GTAC	5 cut(s)	166, 247, 514, 527, 550
RsaNI	GTAC	5 cut(s)	165, 246, 513, 526, 549
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	91, 96
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	3 cut(s)	386, 399, 645
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	104
SfcI	CTRYAG	2 cut(s)	614, 630
SfoI	GGCGCC	2 cut(s)	52, 492
SinI	GGWCC	2 cut(s)	386, 645
SpeI	ACTAGT	1 cut(s)	652
Sse9I	AATT	3 cut(s)	328, 447, 498
SsiI	CCGC	3 cut(s)	96, 120, 462
SspDI	GGCGCC	2 cut(s)	50, 490
SspMI	CTAG	3 cut(s)	47, 276, 653
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	46, 354
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	285, 468
TasI	AATT	3 cut(s)	328, 447, 498
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	386, 645
XapI	RAATTY	1 cut(s)	328
XmaJI	CCTAGG	1 cut(s)	46
XspI	CTAG	3 cut(s)	47, 276, 653
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.