Rh4DG246000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019500
Physical Location & Seq
Reverse (-)
45831458 .. 45831658
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG246000.1

Sequence Viewer

Length: 201 bp
ATGGCTCTCCTACCGGAAACTAAACCGGAACTCACACCTGAGTTCCTAGGCGCCGGAATAGCTGATAAGAACGACGTCACCGACAAAGGCAGCGCCGGTGAGACCTCTGAAGCTTTTCGTCACCGCCTCTCTTCTTCATCATCGTCGTTGTCTTCGTCTAGAAGGGAGCAGCGATTTCCTGCATCACGGAGATCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.14

Weight (kDa)

8.27

Isoelectric Point (pI)

82.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019500)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034255
rosa_multiflora Rmu_sc0001290.1_g000012
rosa_roxburghii Rroxscaffold_5G00365510
rosa_samantha Rh2CG249500 Rh4DG246000 Rh5CG119600 Rh5DG106400 Rh5DG246900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 2 cut(s) 51, 75
AluBI AGCT 2 cut(s) 62, 113
AluI AGCT 2 cut(s) 62, 113
Alw26I GTCTC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 90, 169
Asp700I GAANNNNTTC 1 cut(s) 114
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 2 cut(s) 53, 95
AsuHPI GGTGA 3 cut(s) 70, 110, 113
AvrII CCTAGG 1 cut(s) 46
BanI GGYRCC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 102, 181
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 47, 159
BfoI RGCGCY 2 cut(s) 54, 96
BglII AGATCT 1 cut(s) 191
BisI GCNGC 2 cut(s) 91, 170
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 2 cut(s) 92, 171
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 144
BsaHI GRCGYC 2 cut(s) 51, 75
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 2 cut(s) 13, 25
Bse118I RCCGGY 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 102, 181
BshNI GGYRCC 1 cut(s) 50
BsiSI CCGG 4 cut(s) 14, 26, 54, 96
BsmAI GTCTC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 191
BssNI GRCGYC 2 cut(s) 51, 75
BssT1I CCWWGG 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 136
BstACI GRCGYC 2 cut(s) 51, 75
BstDEI CTNAG 1 cut(s) 39
BstH2I RGCGCY 2 cut(s) 54, 96
BstHHI GCGC 2 cut(s) 53, 95
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 102, 181
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
CfoI GCGC 2 cut(s) 53, 95
Cfr10I RCCGGY 1 cut(s) 95
CviAII CATG 1 cut(s) 198
CviJI RGCY 3 cut(s) 5, 62, 113
CviKI_1 RGCY 3 cut(s) 5, 62, 113
DdeI CTNAG 1 cut(s) 39
DinI GGCGCC 1 cut(s) 52
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 46
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 201
FaiI YATR 1 cut(s) 199
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 91, 170
Fsp4HI GCNGC 2 cut(s) 91, 170
FspBI CTAG 2 cut(s) 47, 159
GlaI GCGC 2 cut(s) 52, 94
GluI GCNGC 2 cut(s) 91, 170
HaeII RGCGCY 2 cut(s) 54, 96
HapII CCGG 4 cut(s) 14, 26, 54, 96
HhaI GCGC 2 cut(s) 53, 95
Hin1I GRCGYC 2 cut(s) 51, 75
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 2 cut(s) 51, 93
HinP1I GCGC 2 cut(s) 51, 93
HindIII AAGCTT 1 cut(s) 111
HpaII CCGG 4 cut(s) 14, 26, 54, 96
HphI GGTGA 3 cut(s) 70, 110, 113
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 159
Hpy99I CGWCG 2 cut(s) 77, 148
HpyAV CCTTC 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 2 cut(s) 51, 75
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 2 cut(s) 51, 93
KasI GGCGCC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 6 cut(s) 27, 39, 51, 67, 109, 192
Lsp1109I GCAGC 2 cut(s) 102, 181
LweI GCATC 1 cut(s) 191
MaeI CTAG 2 cut(s) 47, 159
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 76, 119
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 3 cut(s) 123, 126, 144
MflI RGATCY 1 cut(s) 191
Mly113I GGCGCC 1 cut(s) 51
MnlI CCTC 2 cut(s) 115, 137
MroXI GAANNNNTTC 1 cut(s) 114
MspI CCGG 4 cut(s) 14, 26, 54, 96
MwoI GCNNNNNNNGC 1 cut(s) 59
NarI GGCGCC 1 cut(s) 51
NdeII GATC 1 cut(s) 191
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 76, 119
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 152
PdmI GAANNNNTTC 1 cut(s) 114
PkrI GCNGC 2 cut(s) 92, 171
PluTI GGCGCC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 191
SatI GCNGC 2 cut(s) 91, 170
Sau3AI GATC 1 cut(s) 191
SetI ASST 5 cut(s) 40, 64, 78, 107, 115
SfaNI GCATC 1 cut(s) 191
SfoI GGCGCC 1 cut(s) 52
SgeI CNNG 8 cut(s) 26, 38, 50, 59, 66, 108, 171, 191
SgrAI CRCCGGYG 1 cut(s) 95
SsiI CCGC 1 cut(s) 124
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 2 cut(s) 47, 159
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 1 cut(s) 78
TseFI GTSAC 2 cut(s) 76, 119
TseI GCWGC 2 cut(s) 90, 169
Tsp45I GTSAC 2 cut(s) 76, 119
TspDTI ATGAA 1 cut(s) 126
XbaI TCTAGA 1 cut(s) 158
XmaJI CCTAGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 47, 159
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.