Rh5DG106400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019500
Physical Location & Seq
Reverse (-)
9691254 .. 9694108
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG106400.1

Sequence Viewer

Length: 735 bp
ATGGCTCTCCTACCGGAAACAAAACCGGAACTCACACCTGAGTTCCTAGGCGCCGGAATAGCTGATAAGAACGACGTCACCGACAAAGGCAGCGCCGGTGAGACCTCTGAAGCTTTTCGTCACCGCCTATCTTCTTCATCATCGTCGTTGTCTTCAGAAGGTCTGATCAAGGAGCCACGTTATGGGAGGTGGAAAGCTCTAATCGATGATGTTTTTTATATCAATCTGAATGGTCATCTCACTGGCAAGGCTTATGGTTTTCGCCCTTCCAAGCAGAAATGGGTGATACGGGTGCCGGATCTGGGAGTAATAGGTCAATTTAGACGGCGAGATGAAGTAATGCAGGAGTGTAATCTACCTAGCAGTGAAATGGTTGTAGATGGTGGTGTGGATGAAGTGTTGGAGTCGGAGATGGTAGTACCGGCAGCGAAAAGGCTGAGGTTGGAAGTTTTGGGTAGACTCGGGGAGACAAGTAAACCGAGGCCCAATGGGGAGAAGCTTAAACATGGAGTTAAGAATGGGCCATGCTCTAATCAGGTTTCTACACGGGTTGTACCCAATGTGTCTACAGAGTCCAAACCTATAGATAATGGTTGTGATGCTCTTGAACAGACCCATCTTATAACTACAGAGCCTCCGCTCGTGTTTAGCCCTAGGAAGACAACGGGGGAAAAAGGAAAGGGGAAGGCTGATTCTGATGATGGGAAAGCCAATGGGGGCAGAGCGAGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

26.41

Weight (kDa)

7.7

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019500)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034255
rosa_multiflora Rmu_sc0001290.1_g000012
rosa_roxburghii Rroxscaffold_5G00365510
rosa_samantha Rh2CG249500 Rh4DG246000 Rh5CG119600 Rh5DG106400 Rh5DG246900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 2 cut(s) 50, 292
AccB7I CCANNNNNTGG 1 cut(s) 182
AccBSI CCGCTC 1 cut(s) 640
AccI GTMKAC 2 cut(s) 457, 566
AciI CCGC 2 cut(s) 124, 638
AclWI GGATC 1 cut(s) 306
AcuI CTGAAG 2 cut(s) 129, 138
AcyI GRCGYC 2 cut(s) 51, 75
AfaI GTAC 2 cut(s) 420, 555
AfiI CCNNNNNNNGG 2 cut(s) 182, 302
AgsI TTSAA 1 cut(s) 608
AluBI AGCT 4 cut(s) 62, 113, 197, 499
AluI AGCT 4 cut(s) 62, 113, 197, 499
Alw26I GTCTC 2 cut(s) 95, 461
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 2 cut(s) 482, 521
ApeKI GCWGC 2 cut(s) 90, 425
Asp700I GAANNNNTTC 1 cut(s) 114
AspA2I CCTAGG 2 cut(s) 46, 653
AspLEI GCGC 2 cut(s) 53, 95
AspS9I GGNCC 2 cut(s) 483, 521
AsuHPI GGTGA 4 cut(s) 70, 110, 113, 295
AvaI CYCGRG 1 cut(s) 461
AvrII CCTAGG 2 cut(s) 46, 653
BanI GGYRCC 2 cut(s) 50, 292
BauI CACGAG 1 cut(s) 641
BbsI GAAGAC 2 cut(s) 144, 665
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 2 cut(s) 102, 437
BccI CCATC 4 cut(s) 374, 406, 624, 695
BceAI ACGGC 1 cut(s) 341
BclI TGATCA 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 95, 461
BfaI CTAG 3 cut(s) 47, 360, 654
BfmI CTRYAG 3 cut(s) 567, 582, 627
BfoI RGCGCY 2 cut(s) 54, 96
BisI GCNGC 2 cut(s) 91, 426
BlnI CCTAGG 2 cut(s) 46, 653
BlsI GCNGC 2 cut(s) 92, 427
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 483, 521
BmiI GGNNCC 3 cut(s) 52, 174, 294
BmsI GCATC 1 cut(s) 589
BpiI GAAGAC 2 cut(s) 144, 665
Bpu10I CCTNAGC 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 204
BsaHI GRCGYC 2 cut(s) 51, 75
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 46, 479, 653
BsaWI WCCGGW 2 cut(s) 13, 25
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 302
Bse118I RCCGGY 2 cut(s) 95, 421
Bse1I ACTGG 1 cut(s) 247
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 46, 479, 653
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 182, 302
BseMII CTCAG 2 cut(s) 30, 428
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 102, 437
BshFI GGCC 2 cut(s) 484, 523
BshNI GGYRCC 2 cut(s) 50, 292
BshVI ATCGAT 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 6 cut(s) 14, 26, 54, 96, 296, 422
BslI CCNNNNNNNGG 2 cut(s) 182, 302
BsmAI GTCTC 2 cut(s) 95, 461
BsnI GGCC 2 cut(s) 484, 523
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 461
Bsp143I GATC 2 cut(s) 165, 298
BspACI CCGC 2 cut(s) 124, 638
BspANI GGCC 2 cut(s) 484, 523
BspCNI CTCAG 2 cut(s) 31, 429
BspDI ATCGAT 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 52, 174, 294
BspPI GGATC 1 cut(s) 306
BspT107I GGYRCC 2 cut(s) 50, 292
BspTNI GGTCTC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 640
BsrFI RCCGGY 2 cut(s) 95, 421
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 2 cut(s) 95, 421
BssECI CCNNGG 3 cut(s) 46, 479, 653
BssMI GATC 2 cut(s) 165, 298
BssNI GRCGYC 2 cut(s) 51, 75
BssSI CACGAG 1 cut(s) 641
BssT1I CCWWGG 2 cut(s) 46, 653
Bst2BI CACGAG 1 cut(s) 641
BstACI GRCGYC 2 cut(s) 51, 75
BstDEI CTNAG 2 cut(s) 39, 437
BstF5I GGATG 1 cut(s) 397
BstH2I RGCGCY 2 cut(s) 54, 96
BstHHI GCGC 2 cut(s) 53, 95
BstKTI GATC 2 cut(s) 168, 301
BstMAI GTCTC 2 cut(s) 95, 461
BstMBI GATC 2 cut(s) 165, 298
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSFI CTRYAG 3 cut(s) 567, 582, 627
BstV1I GCAGC 2 cut(s) 102, 437
BstV2I GAAGAC 2 cut(s) 144, 665
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 204
BsuRI GGCC 2 cut(s) 484, 523
BsuTUI ATCGAT 1 cut(s) 204
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 240, 370
CfoI GCGC 2 cut(s) 53, 95
Cfr10I RCCGGY 2 cut(s) 95, 421
Cfr13I GGNCC 2 cut(s) 483, 521
ClaI ATCGAT 1 cut(s) 204
Csp6I GTAC 2 cut(s) 419, 554
CviAII CATG 2 cut(s) 506, 525
CviQI GTAC 2 cut(s) 419, 554
DdeI CTNAG 2 cut(s) 39, 437
DinI GGCGCC 1 cut(s) 52
DpnI GATC 2 cut(s) 167, 300
DpnII GATC 2 cut(s) 165, 298
Eco130I CCWWGG 2 cut(s) 46, 653
Eco31I GGTCTC 1 cut(s) 95
Eco57I CTGAAG 2 cut(s) 129, 138
Eco88I CYCGRG 1 cut(s) 461
EcoT14I CCWWGG 2 cut(s) 46, 653
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 46, 653
FaeI CATG 2 cut(s) 509, 528
FaiI YATR 7 cut(s) 183, 219, 255, 507, 526, 584, 623
FatI CATG 2 cut(s) 505, 524
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 2 cut(s) 457, 566
Fnu4HI GCNGC 2 cut(s) 91, 426
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 2 cut(s) 91, 426
FspBI CTAG 3 cut(s) 47, 360, 654
GlaI GCGC 2 cut(s) 52, 94
GluI GCNGC 2 cut(s) 91, 426
HaeII RGCGCY 2 cut(s) 54, 96
HaeIII GGCC 2 cut(s) 484, 523
HapII CCGG 6 cut(s) 14, 26, 54, 96, 296, 422
HhaI GCGC 2 cut(s) 53, 95
Hin1I GRCGYC 2 cut(s) 51, 75
Hin1II CATG 2 cut(s) 509, 528
Hin6I GCGC 2 cut(s) 51, 93
HinP1I GCGC 2 cut(s) 51, 93
HindIII AAGCTT 2 cut(s) 111, 497
HinfI GANTC 4 cut(s) 404, 459, 572, 692
HpaII CCGG 6 cut(s) 14, 26, 54, 96, 296, 422
HphI GGTGA 4 cut(s) 70, 110, 113, 295
Hpy166II GTNNAC 3 cut(s) 458, 476, 567
Hpy188I TCNGA 6 cut(s) 109, 157, 165, 228, 409, 697
Hpy188III TCNNGA 1 cut(s) 605
Hpy8I GTNNAC 3 cut(s) 458, 476, 567
Hpy99I CGWCG 2 cut(s) 77, 148
HpyAV CCTTC 3 cut(s) 152, 276, 679
HpyCH4IV ACGT 2 cut(s) 75, 178
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 39, 437
HpySE526I ACGT 2 cut(s) 75, 178
Hsp92I GRCGYC 2 cut(s) 51, 75
Hsp92II CATG 2 cut(s) 509, 528
HspAI GCGC 2 cut(s) 51, 93
KasI GGCGCC 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 2 cut(s) 165, 298
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 2 cut(s) 102, 437
LweI GCATC 1 cut(s) 589
MaeI CTAG 3 cut(s) 47, 360, 654
MaeII ACGT 2 cut(s) 75, 178
MaeIII GTNAC 2 cut(s) 76, 119
MalI GATC 2 cut(s) 167, 300
MbiI CCGCTC 1 cut(s) 640
MboI GATC 2 cut(s) 165, 298
MboII GAAGA 4 cut(s) 123, 126, 144, 670
MflI RGATCY 1 cut(s) 298
MluCI AATT 1 cut(s) 317
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 3 cut(s) 413, 453, 581
MmeI TCCRAC 3 cut(s) 381, 387, 423
MnlI CCTC 5 cut(s) 115, 180, 432, 474, 645
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 501, 513
MspI CCGG 6 cut(s) 14, 26, 54, 96, 296, 422
MwoI GCNNNNNNNGC 1 cut(s) 59
NarI GGCGCC 1 cut(s) 51
NdeII GATC 2 cut(s) 165, 298
NlaIII CATG 2 cut(s) 509, 528
NlaIV GGNNCC 3 cut(s) 52, 174, 294
NmuCI GTSAC 2 cut(s) 76, 119
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 692
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 2 cut(s) 92, 427
PleI GAGTC 3 cut(s) 412, 453, 580
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 3 cut(s) 412, 453, 580
PsiI TTATAA 1 cut(s) 623
PspN4I GGNNCC 3 cut(s) 52, 174, 294
PspPI GGNCC 2 cut(s) 483, 521
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 2 cut(s) 420, 555
RsaNI GTAC 2 cut(s) 419, 554
SaqAI TTAA 2 cut(s) 501, 513
SatI GCNGC 2 cut(s) 91, 426
Sau3AI GATC 2 cut(s) 165, 298
Sau96I GGNCC 2 cut(s) 483, 521
SchI GAGTC 3 cut(s) 413, 453, 581
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 3 cut(s) 567, 582, 627
SfoI GGCGCC 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 95
Sse9I AATT 1 cut(s) 317
SsiI CCGC 2 cut(s) 124, 638
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 3 cut(s) 47, 360, 654
StyI CCWWGG 2 cut(s) 46, 653
TaiI ACGT 2 cut(s) 78, 181
TaqI TCGA 1 cut(s) 204
TasI AATT 1 cut(s) 317
TfiI GAWTC 1 cut(s) 692
Tru1I TTAA 2 cut(s) 501, 513
Tru9I TTAA 2 cut(s) 501, 513
TscAI CASTG 2 cut(s) 247, 370
TseFI GTSAC 2 cut(s) 76, 119
TseI GCWGC 2 cut(s) 90, 425
Tsp45I GTSAC 2 cut(s) 76, 119
TspDTI ATGAA 3 cut(s) 126, 348, 408
TspRI CASTG 2 cut(s) 247, 370
Van91I CCANNNNNTGG 1 cut(s) 182
XmaJI CCTAGG 2 cut(s) 46, 653
XmiI GTMKAC 2 cut(s) 457, 566
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 3 cut(s) 47, 360, 654
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.