Rh5CG119600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019500
Physical Location & Seq
Forward (+)
9913956 .. 9914690
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG119600.1

Sequence Viewer

Length: 549 bp
ATGGTTGTAGATGGCGGTGTGGGTGAAGTGTTGGAGTCGGAGATGGCAGTACCGGCGGCGAAAAGGCCGAGGTTGGAAGTTTTGGGTAGACTTGGGGAGGCAAGTAAACCGAGGCCCAATAGGGAGAAGCTTAAACATGGAGTTAAGAATGGGCCATGCTTTAATCGGGTTTCTACACGGGTTGTACCCAATGTGTTTACGGAGTCCGAACCTATAAATAATGGTTGTGATGCTCTTGAAAAACAGACCCATCTTAAAACGACAGAGCCTTCGCTCGTGTTTAGCCGTAGGAAGACAACGGGGAAAAAGGAAAGGGGAAGGCTGATTCTGATGTTGGGAAAGCCAATGGGGGCAGAGCGAATGGGTGATGTTCAAGGCGGAAGACGTGGTGGTAGAGGAGGTAAACGTAGAGGCAGAGGCTTTCATGTGGGGGGAAGTGCTCGCCGAAAGGGGACAAGTGCCTCTCTGACTAAGCCAGGTATTTCTGAGAAAATTGTTTCTGTTAAATCCGTGATGGGCTCCGGAGATCGAGCCCATCATGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.64

Weight (kDa)

10.94

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019500)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034255
rosa_multiflora Rmu_sc0001290.1_g000012
rosa_roxburghii Rroxscaffold_5G00365510
rosa_samantha Rh2CG249500 Rh4DG246000 Rh5CG119600 Rh5DG106400 Rh5DG246900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 521
AciI CCGC 3 cut(s) 15, 56, 378
AfaI GTAC 2 cut(s) 51, 186
AgsI TTSAA 2 cut(s) 239, 374
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 442
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 3 cut(s) 65, 113, 152
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AspS9I GGNCC 2 cut(s) 114, 152
AsuHPI GGTGA 2 cut(s) 35, 377
BanII GRGCYC 2 cut(s) 521, 535
BauI CACGAG 1 cut(s) 275
BbsI GAAGAC 2 cut(s) 299, 388
Bbv12I GWGCWC 1 cut(s) 442
BccI CCATC 5 cut(s) 5, 37, 258, 508, 543
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 477
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 477
BmgBI CACGTC 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 114, 152
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 2 cut(s) 299, 388
BsaJI CCNNGG 2 cut(s) 68, 110
BsaWI WCCGGW 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 52
BseAI TCCGGA 1 cut(s) 521
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 68, 110
BseMII CTCAG 1 cut(s) 477
BseRI GAGGAG 1 cut(s) 411
BshFI GGCC 3 cut(s) 67, 115, 154
BsiHKAI GWGCWC 1 cut(s) 442
BsiSI CCGG 2 cut(s) 53, 522
BslFI GGGAC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 3 cut(s) 67, 115, 154
Bsp1286I GDGCHC 3 cut(s) 442, 521, 535
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 1 cut(s) 526
BspACI CCGC 3 cut(s) 15, 56, 378
BspANI GGCC 3 cut(s) 67, 115, 154
BspCNI CTCAG 1 cut(s) 478
BspEI TCCGGA 1 cut(s) 521
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 68, 110
BssMI GATC 1 cut(s) 526
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 471, 486
BstKTI GATC 1 cut(s) 529
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstV2I GAAGAC 2 cut(s) 299, 388
BsuRI GGCC 3 cut(s) 67, 115, 154
BtrI CACGTC 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 442
CciI TCATGA 1 cut(s) 538
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 114, 152
Csp6I GTAC 2 cut(s) 50, 185
CviAII CATG 4 cut(s) 137, 156, 425, 539
CviQI GTAC 2 cut(s) 50, 185
DdeI CTNAG 2 cut(s) 471, 486
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
EciI GGCGGA 1 cut(s) 393
Eco24I GRGCYC 2 cut(s) 521, 535
EcoRII CCWGG 1 cut(s) 475
EcoT38I GRGCYC 2 cut(s) 521, 535
FaeI CATG 4 cut(s) 140, 159, 428, 542
FaiI YATR 5 cut(s) 138, 157, 215, 426, 540
FaqI GGGAC 1 cut(s) 466
FatI CATG 4 cut(s) 136, 155, 424, 538
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 57
FriOI GRGCYC 2 cut(s) 521, 535
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 3 cut(s) 67, 115, 154
HapII CCGG 2 cut(s) 53, 522
Hin1II CATG 4 cut(s) 140, 159, 428, 542
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 35, 203, 325
HpaII CCGG 2 cut(s) 53, 522
HphI GGTGA 2 cut(s) 35, 377
Hpy166II GTNNAC 4 cut(s) 89, 107, 198, 404
Hpy188I TCNGA 5 cut(s) 40, 208, 330, 468, 487
Hpy188III TCNNGA 3 cut(s) 236, 522, 539
Hpy8I GTNNAC 4 cut(s) 89, 107, 198, 404
HpyAV CCTTC 2 cut(s) 279, 312
HpyCH4IV ACGT 2 cut(s) 385, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 471, 486
HpySE526I ACGT 2 cut(s) 385, 406
Hsp92II CATG 4 cut(s) 140, 159, 428, 542
Kpn2I TCCGGA 1 cut(s) 521
Kzo9I GATC 1 cut(s) 526
LmnI GCTCC 1 cut(s) 524
LpnPI CCDG 4 cut(s) 66, 462, 489, 535
LweI GCATC 1 cut(s) 220
MaeII ACGT 2 cut(s) 385, 406
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 2 cut(s) 304, 393
MhlI GDGCHC 3 cut(s) 442, 521, 535
MluCI AATT 1 cut(s) 492
MlyI GAGTC 2 cut(s) 44, 212
MmeI TCCRAC 3 cut(s) 12, 18, 54
MnlI CCTC 8 cut(s) 63, 91, 105, 389, 392, 404, 410, 472
MroI TCCGGA 1 cut(s) 521
MseI TTAA 5 cut(s) 132, 144, 162, 255, 504
MspI CCGG 2 cut(s) 53, 522
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 526
NlaIII CATG 4 cut(s) 140, 159, 428, 542
NlaIV GGNNCC 1 cut(s) 520
NmeAIII GCCGAG 1 cut(s) 93
PagI TCATGA 1 cut(s) 538
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 43, 211
PpsI GAGTC 2 cut(s) 43, 211
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 2 cut(s) 114, 152
RsaI GTAC 2 cut(s) 51, 186
RsaNI GTAC 2 cut(s) 50, 185
SaqAI TTAA 5 cut(s) 132, 144, 162, 255, 504
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 526
Sau96I GGNCC 2 cut(s) 114, 152
SchI GAGTC 2 cut(s) 44, 212
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 3 cut(s) 442, 521, 535
SetI ASST 7 cut(s) 74, 132, 214, 388, 403, 409, 481
SfaNI GCATC 1 cut(s) 220
Sse9I AATT 1 cut(s) 492
SsiI CCGC 3 cut(s) 15, 56, 378
StyD4I CCNGG 1 cut(s) 475
TaiI ACGT 2 cut(s) 388, 409
TaqI TCGA 1 cut(s) 529
TasI AATT 1 cut(s) 492
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 5 cut(s) 132, 144, 162, 255, 504
Tru9I TTAA 5 cut(s) 132, 144, 162, 255, 504
TspDTI ATGAA 1 cut(s) 413
TspGWI ACGGA 2 cut(s) 215, 499
XmiI GTMKAC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.