Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012402

Physical Location & Seq

Genomic Coordinates Reverse (-)

59555952 .. 59556390

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCACAGGCTTGGGTCGGTGCCTACTTCGTCGTCGTCTTCATCCTCTTCAGTGGCGTCTCCGACGACCTTGACGTGTTAAAAGCAGTCACAAACCCGAGACCCAATTCGGAGCGGAAGCTGAAGCTGCTTGAGTTCATGGCTTTGGCATTGAAGTTCCGGGTCAACCCGGTGGATCATCCACTGCCAGTGGCGGAGCTTTTTACCCAGGAACAAGTCGGATCAACCCAATTTCTTTACGAGCTCATATCGTGTTTCAGACTGGGATTCATTGCCGCTAACCTGGCAATTCTGGAAGCCACATTAGCAGACCAGTACATGCACCTCCTGCACGCGCCAGAATGGGAAATGTCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

120

Amino Acids

13.44

Weight (kDa)

5.0

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52510
fragaria_vesca	FvH4_7g30100
malus_domestica	MD01G1206800.v1.1 MD07G1277400.v1.1
prunus_persica	Prupe.2G299400_v2.0.a1
pyrus_communis	pycom01g21720 pycom07g25240
rosa_chinensis	RchiOBHm_Chr1g0378081
rosa_laevigata	RLG00000026473 RLG00000035032
rosa_multiflora	Rmu_sc0001465.1_g000012
rosa_roxburghii	Rroxscaffold_156G00440300 Rroxscaffold_4G00280790
rosa_rugosa	Rorug01G0406200
rosa_samantha	Rh1AG423600 Rh1BG385000 Rh1CG399000 Rh1DG416200
rosa_wichuraiana	Rw1G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	1 cut(s)	335
AciI	CCGC	3 cut(s)	115, 194, 276
AclWI	GGATC	2 cut(s)	183, 229
AcuI	CTGAAG	2 cut(s)	34, 143
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	207, 282
AluBI	AGCT	4 cut(s)	121, 127, 199, 244
AluI	AGCT	4 cut(s)	121, 127, 199, 244
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	64, 94
AlwI	GGATC	2 cut(s)	183, 229
Ama87I	CYCGRG	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	337
AsuC2I	CCSGG	2 cut(s)	161, 170
AvaI	CYCGRG	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	114
BciT130I	CCWGG	2 cut(s)	209, 284
BcnI	CCSGG	2 cut(s)	161, 170
BcoDI	GTCTC	2 cut(s)	64, 94
BisI	GCNGC	2 cut(s)	128, 276
BlsI	GCNGC	2 cut(s)	129, 277
Bme1390I	CCNGG	4 cut(s)	161, 170, 209, 284
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	4 cut(s)	161, 170, 209, 284
BmrI	ACTGGG	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	2 cut(s)	161, 170
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	207
Bse1I	ACTGG	3 cut(s)	188, 267, 313
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	209, 284
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	42, 178
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	3 cut(s)	188, 267, 313
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	160, 170
BsmAI	GTCTC	2 cut(s)	64, 94
BsmBI	CGTCTC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	175, 221
BspACI	CCGC	3 cut(s)	115, 194, 276
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	2 cut(s)	183, 229
BspT107I	GGYRCC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	188, 267, 313
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	175, 221
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	209, 284
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	42, 178
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	178, 224
BstMAI	GTCTC	2 cut(s)	64, 94
BstMBI	GATC	2 cut(s)	175, 221
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 284, 305, 328
BstNI	CCWGG	2 cut(s)	209, 284
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	4 cut(s)	159, 168, 207, 282
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	31
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	42, 178
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	3 cut(s)	58, 182, 195
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	337
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	2 cut(s)	139, 319
CviJI	RGCY	7 cut(s)	11, 121, 127, 143, 199, 244, 299
CviKI_1	RGCY	7 cut(s)	11, 121, 127, 143, 199, 244, 299
CviQI	GTAC	1 cut(s)	316
DpnI	GATC	2 cut(s)	177, 223
DpnII	GATC	2 cut(s)	175, 221
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	34, 143
Eco88I	CYCGRG	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	207, 282
EcoT38I	GRGCYC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	2 cut(s)	142, 322
FaiI	YATR	3 cut(s)	140, 248, 320
FatI	CATG	2 cut(s)	138, 318
Fnu4HI	GCNGC	2 cut(s)	128, 276
FokI	GGATG	2 cut(s)	29, 165
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	128, 276
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	2 cut(s)	128, 276
HapII	CCGG	2 cut(s)	160, 170
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	337
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	142, 322
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	267
HpaII	CCGG	2 cut(s)	160, 170
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	64, 112, 221, 260
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	3 cut(s)	35, 38, 68
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	322, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 284, 305, 328
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	142, 322
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	175, 221
LmnI	GCTCC	2 cut(s)	112, 196
Lsp1109I	GCAGC	1 cut(s)	114
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	3, 88
MalI	GATC	2 cut(s)	177, 223
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	2 cut(s)	175, 221
MboII	GAAGA	2 cut(s)	31, 40
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	106, 230, 288
MmeI	TCCRAC	2 cut(s)	87, 199
MnlI	CCTC	2 cut(s)	56, 335
MseI	TTAA	2 cut(s)	80, 358
MspI	CCGG	2 cut(s)	160, 170
MspR9I	CCNGG	4 cut(s)	161, 170, 209, 284
MvaI	CCWGG	2 cut(s)	209, 284
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	127, 284, 305, 328
NciI	CCSGG	2 cut(s)	161, 170
NdeII	GATC	2 cut(s)	175, 221
NlaIII	CATG	2 cut(s)	142, 322
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	2 cut(s)	3, 88
NspI	RCATGY	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	129, 277
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	207, 282
PspGI	CCWGG	2 cut(s)	207, 282
PspN4I	GGNNCC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	80, 358
SatI	GCNGC	2 cut(s)	128, 276
Sau3AI	GATC	2 cut(s)	175, 221
ScrFI	CCNGG	4 cut(s)	161, 170, 209, 284
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	72, 78, 123, 129, 201, 246, 285, 327
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	106, 230, 288
SsiI	CCGC	3 cut(s)	115, 194, 276
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	4 cut(s)	159, 168, 207, 282
TaiI	ACGT	1 cut(s)	78
TasI	AATT	3 cut(s)	106, 230, 288
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	80, 358
Tru9I	TTAA	2 cut(s)	80, 358
TscAI	CASTG	3 cut(s)	58, 189, 195
TseFI	GTSAC	2 cut(s)	3, 88
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	2 cut(s)	3, 88
TspDTI	ATGAA	3 cut(s)	31, 127, 259
TspRI	CASTG	3 cut(s)	58, 189, 195
XceI	RCATGY	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.