Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0012402

Physical Location & Seq

Genomic Coordinates Forward (+)

51297968 .. 51300796

Gene Structure 2829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG385000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2004 bp

ATGCAATCAGGGTTCAATTCCGGCAATCAGGGTCTGCCGGATTTTTACGCCGGAGGAGGGAGATCGATCGGCAGCACCATGAGCAACCAACCTTCACAGCCTCAGTACCACCGATCCCAGCTTCCGGGGCTGTTCATGGACCCCACTGGTCCTCAGATCGGTCGCCAAACGCAGAATCCGCACCACAATACAGCCGGGCTCATCGGAAAAAGGACGCTGGCCGAGTTTCAATATCATCAGCACCAAAACCCCTACCAGCAGAATCTGACTAACCAGCAAAATATCTATCTGCGGTCGCTCAAGCCCAAAACTACAGCCAATTATCAGCACTCAAATTTCCAACACGCTTCCCCAATCTCGCCTCTGTCACCAATTGACTTTTCATCTGCCTCATCATATACTACAGGTTCGGAGAATTCCAATACTTCTTCCACAACATCCTCCATGCTATCGCAGCGATATAGGCTGCCCCTTCTTCAACAGCTCCGGCCGCAAACGGTAATTAACCCGATGTTTCAGGCATCCTCATCGCCTTACGTCAACCATAACAACACTGTGCAGCCTCTTCAGAATCAGATTGTTCAGAACCGGGTTCCGGTTTCGGCGATCGAGTCTGAGAAGAAGATGAATAACCCGGTTTCGTCTGTTGATTCTGAGAAGAAGATGATTGACCACAGGCTACAGGAATTGGAGAAGCAGCTCCTCGATGATAACGATGAGGAGGAGGAAGGAGGCGACGCCGTTTCGGTTATTACTAAGACCAACAGCGAGTGGTCCGAGACGATCCAGAATCTGATCGGTCCGAATCAGACGACCCAGAAGCCGGTCTCGCCCTCGCCCACTTCGTCGTCGTCTTCATCCTCCTCGGTGGCGTCTCCGGCGACTCTGACGTGTTCAAAGCAGTCACTGATGGAGGCCGCATCGGCCATTTCAGAAGGGAAATCCGAGGCCGCGGCTGAGATCCTCACGCGCCTGACCCAGGTCACGAACCCGAGACCCAATTCGGAGCAGAGGCTGCTTGAGTTCATGGCTTCGGCGTTGAAGTCGCGGGTCAACCCGGTGGATAATCCGCCGCCGGTGTCGGAGCTTTTTACCCAGGAACACGCCGGGTCGACCCAGGTTCTCTACGAGCTCATACCTTGCTTCAACCTCGGTTTCATAGCCGCTAACCTGGCAATTCTGGAAGCCACATTAGCGGACCAGTCGACGACCAATAAGGTCCATGTGATTGACTTCGATATCGGGCAGGGCGGTCAGTACAGGCACCTCCTGCGCGCTCTCTCCAAGCGCCCGAATGGGAAATCCTCCGTCGTCAAAATCACCACCGTTCCTGATAATGGCGGCGAGGACAGGTTGAGGTCAGTCCGTCAGAATCTGAGCCAAATGGCAAAGAATTTGGGTGTGGGTCTTGAATTCAACGTTGTGAGTCAGAAGCTGAGCGAGCTGAACCGGGAATCGCTGGGATGCGAACCGGACGAGCCGATCGCCGTGAACTTCGCTTTCAAATTGTACAGCATGCCGGACGAGAGTGTCTCCACGGACAACCCCCGAGACGAGCTCCTGCGGCGCGTGAAGGGACTCGGCCCGCGCGTGGTAACGCTGGTCGAACAAGAGCTCAACACCAACACCGCTCCATTCATGGCGCGCGTGAACGAGTCGTGCGCGTATTACGGGGCCCTGATGGACTCGGTCGAGGCGGTGGCGAATGACCACACGGACCGAGTCAAAGCGGAGGAGGCGCTGAGTCGCAAGCTCGCGAACTCGGTCGCTTGCGAAGGGAGGGACCGCGTTGAAAGATGTGAAGTGTTTGGGAAGTGGCGGGCCCGCATGGGAATGGCTGGGTTCGAGTTAAGGAGAATGAGCCAAAGCGTGACCGAGTCGTTAGGCCATGGACTCTTTTCGGGCAACCGAGTCCACCAGGGCTTCACCGTTAAAGAAGAAAACGGAGCCGTTTGCTTCGGTTGGAAAAGCCGTACTCTCACCGTCGCATCAGCTTGGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

667

Amino Acids

73.38

Weight (kDa)

6.59

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	300 - 667	5.5e-104	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52510
fragaria_vesca	FvH4_7g30100
malus_domestica	MD01G1206800.v1.1 MD07G1277400.v1.1
prunus_persica	Prupe.2G299400_v2.0.a1
pyrus_communis	pycom01g21720 pycom07g25240
rosa_chinensis	RchiOBHm_Chr1g0378081
rosa_laevigata	RLG00000026473 RLG00000035032
rosa_multiflora	Rmu_sc0001465.1_g000012
rosa_roxburghii	Rroxscaffold_156G00440300 Rroxscaffold_4G00280790
rosa_rugosa	Rorug01G0406200
rosa_samantha	Rh1AG423600 Rh1BG385000 Rh1CG399000 Rh1DG416200
rosa_wichuraiana	Rw1G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1529
AccB1I	GGYRCC	1 cut(s)	1263
AccBSI	CCGCTC	1 cut(s)	1631
AccI	GTMKAC	2 cut(s)	1112, 1205
AclI	AACGTT	1 cut(s)	1419
AclWI	GGATC	3 cut(s)	108, 778, 955
AcoI	YGGCCR	3 cut(s)	219, 488, 924
AcsI	RAATTY	4 cut(s)	334, 415, 1393, 1412
AcuI	CTGAAG	1 cut(s)	551
AcyI	GRCGYC	2 cut(s)	738, 872
AfaI	GTAC	4 cut(s)	107, 1259, 1511, 1975
AfiI	CCNNNNNNNGG	8 cut(s)	57, 124, 158, 595, 823, 979, 1337, 1591
AflIII	ACRYGT	1 cut(s)	890
AjiI	CACGTC	1 cut(s)	891
AjnI	CCWGG	5 cut(s)	978, 1095, 1116, 1170, 1917
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
Alw21I	GWGCWC	3 cut(s)	1134, 1560, 1617
Alw26I	GTCTC	6 cut(s)	773, 832, 879, 988, 1537, 1545
AlwI	GGATC	3 cut(s)	108, 778, 955
AlwNI	CAGNNNCTG	7 cut(s)	34, 265, 793, 907, 1015, 1375, 1435
Ama87I	CYCGRG	2 cut(s)	991, 1548
AoxI	GGCC	9 cut(s)	219, 488, 915, 924, 948, 1582, 1674, 1821, 1885
ApaI	GGGCCC	2 cut(s)	1678, 1825
ApeKI	GCWGC	6 cut(s)	72, 454, 466, 559, 697, 1015
ApoI	RAATTY	4 cut(s)	334, 415, 1393, 1412
AsuC2I	CCSGG	7 cut(s)	126, 196, 590, 635, 1058, 1108, 1451
AsuHPI	GGTGA	4 cut(s)	360, 1312, 1918, 1972
AvaI	CYCGRG	2 cut(s)	991, 1548
AvaII	GGWCC	8 cut(s)	139, 149, 774, 800, 1198, 1219, 1717, 1783
BaeGI	GKGCMC	2 cut(s)	1678, 1825
BanI	GGYRCC	1 cut(s)	1263
BanII	GRGCYC	6 cut(s)	201, 1134, 1560, 1617, 1678, 1825
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	3 cut(s)	1134, 1560, 1617
BbvI	GCAGC	6 cut(s)	84, 453, 466, 571, 709, 1002
BccI	CCATC	2 cut(s)	904, 1675
BceAI	ACGGC	4 cut(s)	725, 1472, 1934, 1956
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BciT130I	CCWGG	5 cut(s)	980, 1097, 1118, 1172, 1919
BcnI	CCSGG	7 cut(s)	126, 196, 590, 635, 1058, 1108, 1451
BcoDI	GTCTC	6 cut(s)	773, 832, 879, 988, 1537, 1545
BfmI	CTRYAG	3 cut(s)	312, 402, 680
BfoI	RGCGCY	2 cut(s)	1291, 1742
BglI	GCCNNNNNGGC	1 cut(s)	923
BlpI	GCTNAGC	1 cut(s)	1436
Bme18I	GGWCC	8 cut(s)	139, 149, 774, 800, 1198, 1219, 1717, 1783
BmeT110I	CYCGRG	2 cut(s)	991, 1548
BmgBI	CACGTC	1 cut(s)	891
BmiI	GGNNCC	8 cut(s)	141, 594, 1265, 1675, 1676, 1784, 1823, 1948
BmsI	GCATC	4 cut(s)	530, 929, 1454, 1997
BoxI	GACNNNNGTC	1 cut(s)	980
BpiI	GAAGAC	1 cut(s)	846
BplI	GAGNNNNNCTC	4 cut(s)	1517, 1549, 1542, 1574
Bpu1102I	GCTNAGC	1 cut(s)	1436
BpuEI	CTTGAG	2 cut(s)	284, 1040
BpuMI	CCSGG	7 cut(s)	126, 196, 590, 635, 1058, 1108, 1451
Bsa29I	ATCGAT	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	738, 872
BsaI	GGTCTC	2 cut(s)	832, 988
BsaWI	WCCGGW	2 cut(s)	595, 1471
Bsc4I	CCNNNNNNNGG	8 cut(s)	57, 124, 158, 595, 823, 979, 1337, 1591
Bse118I	RCCGGY	2 cut(s)	823, 1075
Bse1I	ACTGG	2 cut(s)	151, 1201
BseBI	CCWGG	5 cut(s)	980, 1097, 1118, 1172, 1919
BseCI	ATCGAT	1 cut(s)	65
BseGI	GGATG	4 cut(s)	437, 521, 857, 1469
BseLI	CCNNNNNNNGG	8 cut(s)	57, 124, 158, 595, 823, 979, 1337, 1591
BseMII	CTCAG	8 cut(s)	116, 167, 606, 645, 948, 1367, 1427, 1733
BseNI	ACTGG	2 cut(s)	151, 1201
BsePI	GCGCGC	2 cut(s)	1273, 1643
BseRI	GAGGAG	6 cut(s)	69, 692, 734, 737, 853, 1748
BseSI	GKGCMC	2 cut(s)	1678, 1825
BseX3I	CGGCCG	1 cut(s)	488
BseXI	GCAGC	6 cut(s)	84, 453, 466, 571, 709, 1002
BseYI	CCCAGC	3 cut(s)	117, 1459, 1838
BsgI	GTGCAG	1 cut(s)	578
Bsh1285I	CGRYCG	8 cut(s)	69, 163, 296, 491, 609, 1485, 1692, 1767
BshFI	GGCC	9 cut(s)	221, 490, 917, 926, 950, 1584, 1676, 1823, 1887
BshNI	GGYRCC	1 cut(s)	1263
BshVI	ATCGAT	1 cut(s)	65
BsiEI	CGRYCG	8 cut(s)	69, 163, 296, 491, 609, 1485, 1692, 1767
BsiHKAI	GWGCWC	3 cut(s)	1134, 1560, 1617
BsiHKCI	CYCGRG	2 cut(s)	991, 1548
BslFI	GGGAC	2 cut(s)	1590, 1796
BslI	CCNNNNNNNGG	8 cut(s)	57, 124, 158, 595, 823, 979, 1337, 1591
BsmAI	GTCTC	6 cut(s)	773, 832, 879, 988, 1537, 1545
BsmBI	CGTCTC	3 cut(s)	773, 879, 1545
BsmFI	GGGAC	2 cut(s)	1590, 1796
BsnI	GGCC	9 cut(s)	221, 490, 917, 926, 950, 1584, 1676, 1823, 1887
Bso31I	GGTCTC	2 cut(s)	832, 988
BsoBI	CYCGRG	2 cut(s)	991, 1548
Bsp120I	GGGCCC	2 cut(s)	1674, 1821
Bsp1286I	GDGCHC	6 cut(s)	201, 1134, 1560, 1617, 1678, 1825
Bsp1407I	TGTACA	1 cut(s)	1509
Bsp143I	GATC	9 cut(s)	62, 66, 113, 156, 606, 783, 795, 960, 1482
Bsp1720I	GCTNAGC	1 cut(s)	1436
Bsp19I	CCATGG	1 cut(s)	1888
Bsp68I	TCGCGA	1 cut(s)	1757
BspANI	GGCC	9 cut(s)	221, 490, 917, 926, 950, 1584, 1676, 1823, 1887
BspCNI	CTCAG	8 cut(s)	115, 166, 607, 646, 949, 1368, 1428, 1734
BspDI	ATCGAT	1 cut(s)	65
BspLI	GGNNCC	8 cut(s)	141, 594, 1265, 1675, 1676, 1784, 1823, 1948
BspPI	GGATC	3 cut(s)	108, 778, 955
BspT107I	GGYRCC	1 cut(s)	1263
BspTNI	GGTCTC	2 cut(s)	832, 988
BsrBI	CCGCTC	1 cut(s)	1631
BsrFI	RCCGGY	2 cut(s)	823, 1075
BsrGI	TGTACA	1 cut(s)	1509
BsrI	ACTGG	2 cut(s)	151, 1201
BssAI	RCCGGY	2 cut(s)	823, 1075
BssHII	GCGCGC	2 cut(s)	1273, 1643
BssMI	GATC	9 cut(s)	62, 66, 113, 156, 606, 783, 795, 960, 1482
BssNI	GRCGYC	2 cut(s)	738, 872
BssT1I	CCWWGG	1 cut(s)	1888
Bst2UI	CCWGG	5 cut(s)	980, 1097, 1118, 1172, 1919
Bst4CI	ACNGT	5 cut(s)	499, 556, 1327, 1930, 1984
Bst6I	CTCTTC	1 cut(s)	570
BstACI	GRCGYC	2 cut(s)	738, 872
BstAPI	GCANNNNNTGC	2 cut(s)	1015, 1270
BstAUI	TGTACA	1 cut(s)	1509
BstDEI	CTNAG	9 cut(s)	102, 153, 615, 654, 756, 957, 1376, 1436, 1742
BstDSI	CCRYGG	3 cut(s)	951, 1536, 1888
BstENI	CCTNNNNNAGG	1 cut(s)	977
BstF5I	GGATG	4 cut(s)	437, 521, 857, 1469
BstH2I	RGCGCY	2 cut(s)	1291, 1742
BstKTI	GATC	9 cut(s)	65, 69, 116, 159, 609, 786, 798, 963, 1485
BstMAI	GTCTC	6 cut(s)	773, 832, 879, 988, 1537, 1545
BstMBI	GATC	9 cut(s)	62, 66, 113, 156, 606, 783, 795, 960, 1482
BstMCI	CGRYCG	8 cut(s)	69, 163, 296, 491, 609, 1485, 1692, 1767
BstNI	CCWGG	5 cut(s)	980, 1097, 1118, 1172, 1919
BstNSI	RCATGY	1 cut(s)	1519
BstPAI	GACNNNNGTC	1 cut(s)	980
BstSFI	CTRYAG	3 cut(s)	312, 402, 680
BstSLI	GKGCMC	2 cut(s)	1678, 1825
BstV1I	GCAGC	6 cut(s)	84, 453, 466, 571, 709, 1002
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	1 cut(s)	960
BstYI	RGATCY	1 cut(s)	960
BstZI	CGGCCG	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	65
BsuRI	GGCC	9 cut(s)	221, 490, 917, 926, 950, 1584, 1676, 1823, 1887
BsuTUI	ATCGAT	1 cut(s)	65
BtgI	CCRYGG	3 cut(s)	951, 1536, 1888
BtgZI	GCGATG	1 cut(s)	513
BtrI	CACGTC	1 cut(s)	891
BtsCI	GGATG	4 cut(s)	437, 521, 857, 1469
BtsIMutI	CAGTG	3 cut(s)	144, 552, 905
BtuMI	TCGCGA	1 cut(s)	1757
CaiI	CAGNNNCTG	7 cut(s)	34, 265, 793, 907, 1015, 1375, 1435
Cfr10I	RCCGGY	2 cut(s)	823, 1075
Cfr42I	CCGCGG	1 cut(s)	954
ClaI	ATCGAT	1 cut(s)	65
CpoI	CGGWCCG	2 cut(s)	800, 1717
CseI	GACGC	3 cut(s)	223, 746, 861
Csp6I	GTAC	4 cut(s)	106, 1258, 1510, 1974
CspI	CGGWCCG	2 cut(s)	800, 1717
CviAII	CATG	9 cut(s)	79, 136, 445, 1027, 1223, 1516, 1639, 1828, 1889
CviQI	GTAC	4 cut(s)	106, 1258, 1510, 1974
DdeI	CTNAG	9 cut(s)	102, 153, 615, 654, 756, 957, 1376, 1436, 1742
DpnI	GATC	9 cut(s)	64, 68, 115, 158, 608, 785, 797, 962, 1484
DpnII	GATC	9 cut(s)	62, 66, 113, 156, 606, 783, 795, 960, 1482
DrdI	GACNNNNNNGTC	1 cut(s)	1529
DseDI	GACNNNNNNGTC	1 cut(s)	1529
EaeI	YGGCCR	3 cut(s)	219, 488, 924
EagI	CGGCCG	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
EciI	GGCGGA	1 cut(s)	1059
Ecl136II	GAGCTC	3 cut(s)	1132, 1558, 1615
EclXI	CGGCCG	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	1888
Eco24I	GRGCYC	6 cut(s)	201, 1134, 1560, 1617, 1678, 1825
Eco31I	GGTCTC	2 cut(s)	832, 988
Eco32I	GATATC	1 cut(s)	1240
Eco47I	GGWCC	8 cut(s)	139, 149, 774, 800, 1198, 1219, 1717, 1783
Eco52I	CGGCCG	1 cut(s)	488
Eco53kI	GAGCTC	3 cut(s)	1132, 1558, 1615
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	2 cut(s)	991, 1548
EcoICRI	GAGCTC	3 cut(s)	1132, 1558, 1615
EcoNI	CCTNNNNNAGG	1 cut(s)	977
EcoO109I	RGGNCCY	2 cut(s)	1674, 1675
EcoRI	GAATTC	2 cut(s)	415, 1412
EcoRII	CCWGG	5 cut(s)	978, 1095, 1116, 1170, 1917
EcoRV	GATATC	1 cut(s)	1240
EcoT14I	CCWWGG	1 cut(s)	1888
EcoT38I	GRGCYC	6 cut(s)	201, 1134, 1560, 1617, 1678, 1825
ErhI	CCWWGG	1 cut(s)	1888
Esp3I	CGTCTC	3 cut(s)	773, 879, 1545
FaeI	CATG	9 cut(s)	82, 139, 448, 1030, 1226, 1519, 1642, 1831, 1892
FaqI	GGGAC	2 cut(s)	1590, 1796
FatI	CATG	9 cut(s)	78, 135, 444, 1026, 1222, 1515, 1638, 1827, 1888
FauI	CCCGC	4 cut(s)	1041, 1593, 1812, 1832
FblI	GTMKAC	2 cut(s)	1112, 1205
FokI	GGATG	4 cut(s)	424, 508, 844, 1476
FriOI	GRGCYC	6 cut(s)	201, 1134, 1560, 1617, 1678, 1825
GsaI	CCCAGC	3 cut(s)	121, 1463, 1842
HaeII	RGCGCY	2 cut(s)	1291, 1742
HaeIII	GGCC	9 cut(s)	221, 490, 917, 926, 950, 1584, 1676, 1823, 1887
HgaI	GACGC	3 cut(s)	223, 746, 861
Hin1I	GRCGYC	2 cut(s)	738, 872
Hin1II	CATG	9 cut(s)	82, 139, 448, 1030, 1226, 1519, 1642, 1831, 1892
HincII	GTYRAC	4 cut(s)	541, 1054, 1113, 1206
HindII	GTYRAC	4 cut(s)	541, 1054, 1113, 1206
HphI	GGTGA	4 cut(s)	360, 1312, 1918, 1972
Hpy166II	GTNNAC	7 cut(s)	541, 1054, 1113, 1206, 1492, 1651, 1915
Hpy188III	TCNNGA	6 cut(s)	787, 985, 1181, 1331, 1409, 1756
Hpy8I	GTNNAC	7 cut(s)	541, 1054, 1113, 1206, 1492, 1651, 1915
Hpy99I	CGWCG	6 cut(s)	740, 850, 853, 1210, 1313, 1988
HpyAV	CCTTC	6 cut(s)	102, 482, 722, 929, 1567, 1769
HpyCH4III	ACNGT	5 cut(s)	499, 556, 1327, 1930, 1984
HpyCH4IV	ACGT	3 cut(s)	537, 890, 1419
HpyCH4V	TGCA	2 cut(s)	4, 559
HpyF3I	CTNAG	9 cut(s)	102, 153, 615, 654, 756, 957, 1376, 1436, 1742
HpySE526I	ACGT	3 cut(s)	537, 890, 1419
Hsp92I	GRCGYC	2 cut(s)	738, 872
Hsp92II	CATG	9 cut(s)	82, 139, 448, 1030, 1226, 1519, 1642, 1831, 1892
KspI	CCGCGG	1 cut(s)	954
Kzo9I	GATC	9 cut(s)	62, 66, 113, 156, 606, 783, 795, 960, 1482
LmnI	GCTCC	7 cut(s)	489, 705, 1006, 1084, 1563, 1636, 1946
Lsp1109I	GCAGC	6 cut(s)	84, 453, 466, 571, 709, 1002
LweI	GCATC	4 cut(s)	530, 929, 1454, 1997
MaeII	ACGT	3 cut(s)	537, 890, 1419
MaeIII	GTNAC	5 cut(s)	366, 903, 982, 1594, 1870
MalI	GATC	9 cut(s)	64, 68, 115, 158, 608, 785, 797, 962, 1484
MbiI	CCGCTC	1 cut(s)	1631
MboI	GATC	9 cut(s)	62, 66, 113, 156, 606, 783, 795, 960, 1482
MboII	GAAGA	9 cut(s)	420, 467, 557, 631, 634, 670, 673, 846, 1949
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	960
MhlI	GDGCHC	6 cut(s)	201, 1134, 1560, 1617, 1678, 1825
MmeI	TCCRAC	3 cut(s)	364, 1062, 1943
MseI	TTAA	4 cut(s)	504, 1850, 1932, 2002
MslI	CAYNNNNRTG	1 cut(s)	1832
MspA1I	CMGCKG	1 cut(s)	953
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	5 cut(s)	980, 1097, 1118, 1172, 1919
NciI	CCSGG	7 cut(s)	126, 196, 590, 635, 1058, 1108, 1451
NcoI	CCATGG	1 cut(s)	1888
NdeII	GATC	9 cut(s)	62, 66, 113, 156, 606, 783, 795, 960, 1482
NlaIII	CATG	9 cut(s)	82, 139, 448, 1030, 1226, 1519, 1642, 1831, 1892
NlaIV	GGNNCC	8 cut(s)	141, 594, 1265, 1675, 1676, 1784, 1823, 1948
NmeAIII	GCCGAG	2 cut(s)	247, 1560
NmuCI	GTSAC	4 cut(s)	366, 903, 982, 1870
NruI	TCGCGA	1 cut(s)	1757
NspI	RCATGY	1 cut(s)	1519
PaeI	GCATGC	1 cut(s)	1519
PauI	GCGCGC	2 cut(s)	1273, 1643
PcsI	WCGNNNNNNNCGW	3 cut(s)	711, 842, 1587
PfeI	GAWTC	8 cut(s)	175, 262, 571, 650, 790, 805, 1372, 1454
PflFI	GACNNNGTC	3 cut(s)	1688, 1721, 1876
Ple19I	CGATCG	3 cut(s)	69, 609, 1485
PshAI	GACNNNNGTC	1 cut(s)	980
Psp124BI	GAGCTC	3 cut(s)	1134, 1560, 1617
Psp1406I	AACGTT	1 cut(s)	1419
Psp6I	CCWGG	5 cut(s)	978, 1095, 1116, 1170, 1917
PspFI	CCCAGC	3 cut(s)	117, 1459, 1838
PspGI	CCWGG	5 cut(s)	978, 1095, 1116, 1170, 1917
PspN4I	GGNNCC	8 cut(s)	141, 594, 1265, 1675, 1676, 1784, 1823, 1948
PspOMI	GGGCCC	2 cut(s)	1674, 1821
PstNI	CAGNNNCTG	7 cut(s)	34, 265, 793, 907, 1015, 1375, 1435
PsuI	RGATCY	1 cut(s)	960
PsyI	GACNNNGTC	3 cut(s)	1688, 1721, 1876
PteI	GCGCGC	2 cut(s)	1273, 1643
PvuI	CGATCG	3 cut(s)	69, 609, 1485
RruI	TCGCGA	1 cut(s)	1757
RsaI	GTAC	4 cut(s)	107, 1259, 1511, 1975
RsaNI	GTAC	4 cut(s)	106, 1258, 1510, 1974
RseI	CAYNNNNRTG	1 cut(s)	1832
Rsr2I	CGGWCCG	2 cut(s)	800, 1717
RsrII	CGGWCCG	2 cut(s)	800, 1717
SacI	GAGCTC	3 cut(s)	1134, 1560, 1617
SacII	CCGCGG	1 cut(s)	954
SalI	GTCGAC	2 cut(s)	1111, 1204
SaqAI	TTAA	4 cut(s)	504, 1850, 1932, 2002
Sau3AI	GATC	9 cut(s)	62, 66, 113, 156, 606, 783, 795, 960, 1482
SduI	GDGCHC	6 cut(s)	201, 1134, 1560, 1617, 1678, 1825
SfaNI	GCATC	4 cut(s)	530, 929, 1454, 1997
SfcI	CTRYAG	3 cut(s)	312, 402, 680
SfiI	GGCCNNNNNGGCC	1 cut(s)	923
Sfr303I	CCGCGG	1 cut(s)	954
SgrAI	CRCCGGYG	1 cut(s)	1075
SgrBI	CCGCGG	1 cut(s)	954
SinI	GGWCC	8 cut(s)	139, 149, 774, 800, 1198, 1219, 1717, 1783
SmiMI	CAYNNNNRTG	1 cut(s)	1832
SmlI	CTYRAG	2 cut(s)	299, 1019
SmoI	CTYRAG	2 cut(s)	299, 1019
SphI	GCATGC	1 cut(s)	1519
SstI	GAGCTC	3 cut(s)	1134, 1560, 1617
StyI	CCWWGG	1 cut(s)	1888
TaaI	ACNGT	5 cut(s)	499, 556, 1327, 1930, 1984
TaiI	ACGT	3 cut(s)	540, 893, 1422
TaqI	TCGA	9 cut(s)	65, 609, 705, 1112, 1205, 1236, 1605, 1692, 1845
TaqII	GACCGA	6 cut(s)	149, 788, 1678, 1734, 1753, 1889
TatI	WGTACW	2 cut(s)	1257, 1509
TauI	GCSGC	8 cut(s)	493, 920, 953, 956, 1075, 1166, 1344, 1567
TfiI	GAWTC	8 cut(s)	175, 262, 571, 650, 790, 805, 1372, 1454
Tru1I	TTAA	4 cut(s)	504, 1850, 1932, 2002
Tru9I	TTAA	4 cut(s)	504, 1850, 1932, 2002
TscAI	CASTG	3 cut(s)	151, 559, 912
TseFI	GTSAC	4 cut(s)	366, 903, 982, 1870
TseI	GCWGC	6 cut(s)	72, 454, 466, 559, 697, 1015
Tsp45I	GTSAC	4 cut(s)	366, 903, 982, 1870
TspDTI	ATGAA	7 cut(s)	124, 372, 641, 846, 1015, 1147, 1627
TspGWI	ACGGA	5 cut(s)	1297, 1355, 1553, 1730, 1959
TspRI	CASTG	3 cut(s)	151, 559, 912
Tth111I	GACNNNGTC	3 cut(s)	1688, 1721, 1876
VpaK11BI	GGWCC	8 cut(s)	139, 149, 774, 800, 1198, 1219, 1717, 1783
XagI	CCTNNNNNAGG	1 cut(s)	977
XapI	RAATTY	4 cut(s)	334, 415, 1393, 1412
XceI	RCATGY	1 cut(s)	1519
XmiI	GTMKAC	2 cut(s)	1112, 1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.