Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012402

Physical Location & Seq

Genomic Coordinates Forward (+)

51293240 .. 51295700

Gene Structure 2461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0406200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGAGTACTAAGAACACTTCCTGTGACACCCACACGTGGAAGTTTCCTTTCAAATTTTGGAGCTGCAGAGAGTTCATCTAAATCCAACTTCAAGTTCAACAAGAAGTCCCAGTTCAGAGTTTTGGCCAAAACAGAGAAGGGTGAGAAGGAAGAAGAAGAAGAGCCCAAGAAAAGGAAACAGTCACTGTTTAGCAGTGTAACAGAGGCGCTTGATTTCTCTCAAACCAGGTCTGAAGAAGACGCTCTACTTCTCGAAGATGCGAGACAGGCCACCAAGTCTGGAGAACAGATGTCAAGAGAACAGTATGGGGCTCTCAGAAGGAAAATTGGAGGCACTTACAAGGATTTCTTCAAATCCTATGTTGAAGTGGATGGGCAATATGTAGAAGAAGGGTGGGTCGACAAAACGTGCAAGGTGTGCAAGAAGGACACCGGCGGCGAGCCAAGGCAAGTGGACAAGCTCGGCAGATACGTTCATGTGGCGTGTATGGGGAAACAGAAATCCGGCAACTTCTTTACCAGACTTTTCTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

179

Amino Acids

20.27

Weight (kDa)

9.26

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52510
fragaria_vesca	FvH4_7g30100
malus_domestica	MD01G1206800.v1.1 MD07G1277400.v1.1
prunus_persica	Prupe.2G299400_v2.0.a1
pyrus_communis	pycom01g21720 pycom07g25240
rosa_chinensis	RchiOBHm_Chr1g0378081
rosa_laevigata	RLG00000026473 RLG00000035032
rosa_multiflora	Rmu_sc0001465.1_g000012
rosa_roxburghii	Rroxscaffold_156G00440300 Rroxscaffold_4G00280790
rosa_rugosa	Rorug01G0406200
rosa_samantha	Rh1AG423600 Rh1BG385000 Rh1CG399000 Rh1DG416200
rosa_wichuraiana	Rw1G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	438
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	255
AcvI	CACGTG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	38, 174
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	54, 94, 100, 355, 368
AjnI	CCWGG	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	2 cut(s)	65, 463
AluI	AGCT	2 cut(s)	65, 463
Alw26I	GTCTC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	126, 270
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	128
BanII	GRGCYC	2 cut(s)	168, 316
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
BbrPI	CACGTG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	2 cut(s)	66, 439
BlsI	GCNGC	2 cut(s)	67, 440
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	517
BsaAI	YACGTR	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 174
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	38, 174
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	52
BshFI	GGCC	2 cut(s)	128, 272
BsiSI	CCGG	2 cut(s)	435, 507
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	38, 174
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	128, 272
Bsp1286I	GDGCHC	2 cut(s)	168, 316
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	2 cut(s)	128, 272
BspCNI	CTCAG	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	3 cut(s)	183, 189, 306
Bst6I	CTCTTC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	11, 317
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 420
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	128, 272
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	185, 202
Cac8I	GCNNGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	434
CseI	GACGC	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	7 cut(s)	65, 128, 166, 272, 314, 445, 463
CviKI_1	RGCY	7 cut(s)	65, 128, 166, 272, 314, 445, 463
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	11, 317
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	2 cut(s)	168, 316
Eco57I	CTGAAG	1 cut(s)	255
Eco72I	CACGTG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	2 cut(s)	168, 316
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	1 cut(s)	482
FaiI	YATR	5 cut(s)	309, 363, 384, 480, 491
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	66, 439
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	2 cut(s)	168, 316
Fsp4HI	GCNGC	2 cut(s)	66, 439
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	2 cut(s)	66, 439
GsuI	CTGGAG	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	128, 272
HapII	CCGG	2 cut(s)	435, 507
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	482
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	435, 507
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	403, 457
Hpy188I	TCNGA	3 cut(s)	119, 235, 320
Hpy188III	TCNNGA	3 cut(s)	254, 282, 297
Hpy8I	GTNNAC	2 cut(s)	403, 457
HpyAV	CCTTC	5 cut(s)	133, 142, 315, 386, 421
HpyCH4III	ACNGT	3 cut(s)	183, 189, 306
HpyCH4IV	ACGT	3 cut(s)	37, 410, 474
HpyCH4V	TGCA	3 cut(s)	68, 414, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 420
HpyF3I	CTNAG	2 cut(s)	11, 317
HpySE526I	ACGT	3 cut(s)	37, 410, 474
Hsp92II	CATG	1 cut(s)	482
HspAI	GCGC	1 cut(s)	209
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	9 cut(s)	36, 125, 214, 241, 254, 267, 448, 520, 535
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	250
MabI	ACCWGGT	1 cut(s)	227
MaeII	ACGT	3 cut(s)	37, 410, 474
MaeIII	GTNAC	3 cut(s)	25, 183, 199
MboII	GAAGA	9 cut(s)	164, 167, 170, 173, 248, 251, 269, 343, 401
MhlI	GDGCHC	2 cut(s)	168, 316
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	2 cut(s)	55, 327
MluNI	TGGCCA	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	199, 326
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	2 cut(s)	435, 507
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	269, 420
NlaIII	CATG	1 cut(s)	482
NmeAIII	GCCGAG	1 cut(s)	444
NmuCI	GTSAC	2 cut(s)	25, 183
PciSI	GCTCTTC	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	67, 440
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	156
SatI	GCNGC	2 cut(s)	66, 439
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	2 cut(s)	168, 316
SetI	ASST	7 cut(s)	40, 67, 233, 413, 420, 465, 477
SexAI	ACCWGGT	1 cut(s)	227
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	66
SgrAI	CRCCGGYG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
Sse9I	AATT	2 cut(s)	55, 327
SsiI	CCGC	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	3 cut(s)	183, 189, 306
TaiI	ACGT	3 cut(s)	40, 413, 477
TaqI	TCGA	2 cut(s)	255, 402
TasI	AATT	2 cut(s)	55, 327
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	441
TscAI	CASTG	2 cut(s)	192, 202
TseFI	GTSAC	2 cut(s)	25, 183
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	2 cut(s)	25, 183
TspDTI	ATGAA	2 cut(s)	66, 467
TspRI	CASTG	2 cut(s)	192, 202
XapI	RAATTY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.