Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7958197.1

Orthogroup ID

OG0011362

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 466

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7958197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggagatattttcacttggtgatctctcaaaaactgtggggaagatgttgacagacatgtcaagtctttatgatgttggtcgccgtaaacgatcagcagggctattactcattgaccgtacactagatcttcttactccatgctgtcatggagattcacttgttgaccgtgtgttttcatccttgcctagtagggaaaatacagcatcctatactcaaataaaaacatcaaaaagccaactaaaacagggcccttcaaacctggaacgtgcttctcttgatgttcagataccacttgctaaaattctaattgaagaagattgcaagatagagagctttcggctattagaaagcattgaagcttttctatgtgggtgggattctggaaactctgcttctcaagttttagatctgagcaatctcaagaacaaaattcataatgagaagcttccccagtcagagaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006508 GO:0006624 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec1

Protein Analysis

155

Amino Acids

17.22

Weight (kDa)

5.71

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42700 AT2G42700 AT2G42700
fragaria_vesca	FvH4_6g27600 FvH4_6g27600
malus_domestica	MD11G1004500.v1.1
prunus_persica	Prupe.3G115700_v2.0.a1
pyrus_communis	pycom09g15450
rosa_chinensis	RchiOBHm_Chr2g0130091
rosa_laevigata	RLG00000019126
rosa_multiflora	Rmu_co7958197.1_g000001 Rmu_co8394299.1_g000001 Rmu_sc0010460.1_g000011
rosa_roxburghii	Rroxscaffold_2G00114090
rosa_rugosa	Rorug02G0291000
rosa_samantha	Rh2AG342800 Rh2BG350500 Rh2CG329900 Rh2DG369000
rosa_wichuraiana	Rw2G027670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	303, 432
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	258, 314, 359
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	3 cut(s)	336, 362, 448
AluI	AGCT	3 cut(s)	336, 362, 448
AoxI	GGCC	1 cut(s)	250
ApaI	GGGCCC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	303, 432
Asp700I	GAANNNNTTC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	250, 251
AsuHPI	GGTGA	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	263
BfaI	CTAG	2 cut(s)	125, 189
BglII	AGATCT	2 cut(s)	127, 409
Bme1390I	CCNGG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	250, 251
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	448
BpuEI	CTTGAG	2 cut(s)	384, 407
Bse1I	ACTGG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	263
BseGI	GGATG	2 cut(s)	179, 206
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	252
Bsp120I	GGGCCC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	22, 92, 127, 409
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	454
BssMI	GATC	4 cut(s)	22, 92, 127, 409
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	3 cut(s)	37, 119, 170
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	179, 206
BstKTI	GATC	4 cut(s)	25, 95, 130, 412
BstMBI	GATC	4 cut(s)	22, 92, 127, 409
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	127, 409
BstYI	RGATCY	2 cut(s)	127, 409
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	179, 206
Cfr13I	GGNCC	2 cut(s)	250, 251
Csp6I	GTAC	1 cut(s)	120
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	3 cut(s)	58, 141, 149
CviJI	RGCY	7 cut(s)	103, 237, 252, 336, 343, 362, 448
CviKI_1	RGCY	7 cut(s)	103, 237, 252, 336, 343, 362, 448
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	4 cut(s)	24, 94, 129, 411
DpnII	GATC	4 cut(s)	22, 92, 127, 409
DraIII	CACNNNGTG	1 cut(s)	20
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	254
EcoO109I	RGGNCCY	2 cut(s)	250, 251
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	3 cut(s)	61, 144, 152
FaiI	YATR	7 cut(s)	59, 72, 142, 150, 213, 370, 438
FatI	CATG	3 cut(s)	57, 140, 148
FokI	GGATG	2 cut(s)	166, 193
FriOI	GRGCYC	1 cut(s)	254
FspBI	CTAG	2 cut(s)	125, 189
HaeIII	GGCC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	61, 144, 152
HincII	GTYRAC	2 cut(s)	51, 166
HindII	GTYRAC	2 cut(s)	51, 166
HindIII	AAGCTT	2 cut(s)	360, 446
HinfI	GANTC	2 cut(s)	155, 380
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	4 cut(s)	51, 89, 122, 166
Hpy188I	TCNGA	3 cut(s)	288, 414, 460
Hpy188III	TCNNGA	3 cut(s)	278, 384, 424
Hpy8I	GTNNAC	4 cut(s)	51, 89, 122, 166
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	3 cut(s)	37, 119, 170
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	324
HpyF3I	CTNAG	1 cut(s)	413
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	3 cut(s)	61, 144, 152
Kzo9I	GATC	4 cut(s)	22, 92, 127, 409
LpnPI	CCDG	5 cut(s)	84, 233, 248, 275, 369
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	2 cut(s)	125, 189
MaeII	ACGT	1 cut(s)	268
MalI	GATC	4 cut(s)	24, 94, 129, 411
MboI	GATC	4 cut(s)	22, 92, 127, 409
MboII	GAAGA	4 cut(s)	55, 122, 326, 329
MflI	RGATCY	2 cut(s)	127, 409
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	3 cut(s)	303, 309, 432
MroXI	GAANNNNTTC	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
NdeII	GATC	4 cut(s)	22, 92, 127, 409
NlaIII	CATG	3 cut(s)	61, 144, 152
NlaIV	GGNNCC	1 cut(s)	252
NspI	RCATGY	1 cut(s)	61
PciI	ACATGT	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	155, 380
PscI	ACATGT	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	252
PspOMI	GGGCCC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	250, 251
PsuI	RGATCY	2 cut(s)	127, 409
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	22, 92, 127, 409
Sau96I	GGNCC	2 cut(s)	250, 251
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	5 cut(s)	264, 271, 338, 364, 450
SfaNI	GCATC	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	399, 422
SmoI	CTYRAG	2 cut(s)	399, 422
Sse9I	AATT	3 cut(s)	303, 309, 432
SspMI	CTAG	2 cut(s)	125, 189
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	37, 119, 170
TaiI	ACGT	1 cut(s)	271
TasI	AATT	3 cut(s)	303, 309, 432
TfiI	GAWTC	2 cut(s)	155, 380
TspDTI	ATGAA	2 cut(s)	168, 425
XapI	RAATTY	2 cut(s)	303, 432
XceI	RCATGY	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	125, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.