Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8394299.1

Orthogroup ID

OG0011362

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1066

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8394299.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgacaaaagcactggccaaatcccagtcatcgttactgaaaaacaaaggaattattcagttggcagcggctgtactggccgcacttgatgaatctcattcatccagatgggaagcatttagcaatgcagagaaaatattaagtgtgagtgctgaagacacaagccagagtcttgctgtgcaaattggtgattttattaataagagtgctttgttgggattgcatggacagaagaatggaaaagttggagtctcccaaggggtactttcttttcaggatactttgtatcttatgatttctggatatatattagctggtgagaatttcccaacagctgggaatgatggccccttttcttggcaagaggagcaactattgaaagattctattgttgaagcaattcttgaaaacccttcaatagcaaaactgaagtttcttcatggcctaatagaagagcttgagaccaacttaagcaggatcaaatcagaggaaagcaaggggacatcctcagatcaaatagatatcgatgatcttgatgacgatcagtggggtaaatggggtgatgaagatgttgatgatacaaataacagtaaagagaaagtgtatgatgacatgcagctgaagttggagttgcgtgatagggtggataaccttttcaaattccttcacaagttatccagtttgaagagtcgaaacataccattgaaggatggggctttagattcggaaaataatttcagtggagatccatatgctagtagaggattactttataagcttctaacacgggtattgagcaagagtgatgttcctggtttggagtatcactcttctactgtggggcaactatttaaaagtggcttcagaagatttggccttgggcaggcaaaaccaagtttagctgatcaaaatgtcatccttgtatttgttattgggggcatcaatggtgtggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006508 GO:0006624 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec1

Protein Analysis

318

Amino Acids

34.88

Weight (kDa)

4.99

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42700 AT2G42700 AT2G42700
fragaria_vesca	FvH4_6g27600 FvH4_6g27600
malus_domestica	MD11G1004500.v1.1
prunus_persica	Prupe.3G115700_v2.0.a1
pyrus_communis	pycom09g15450
rosa_chinensis	RchiOBHm_Chr2g0130091
rosa_laevigata	RLG00000019126
rosa_multiflora	Rmu_co7958197.1_g000001 Rmu_co8394299.1_g000001 Rmu_sc0010460.1_g000011
rosa_roxburghii	Rroxscaffold_2G00114090
rosa_rugosa	Rorug02G0291000
rosa_samantha	Rh2AG342800 Rh2BG350500 Rh2CG329900 Rh2DG369000
rosa_wichuraiana	Rw2G027670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	2 cut(s)	68, 81
AclWI	GGATC	2 cut(s)	485, 740
AcoI	YGGCCR	2 cut(s)	15, 78
AcsI	RAATTY	2 cut(s)	322, 659
AcuI	CTGAAG	4 cut(s)	174, 449, 641, 847
AfaI	GTAC	2 cut(s)	75, 264
AfiI	CCNNNNNNNGG	3 cut(s)	335, 357, 883
AflII	CTTAAG	1 cut(s)	469
AgsI	TTSAA	7 cut(s)	379, 395, 407, 417, 658, 685, 706
AjnI	CCWGG	1 cut(s)	811
AluBI	AGCT	6 cut(s)	314, 335, 457, 619, 778, 902
AluI	AGCT	6 cut(s)	314, 335, 457, 619, 778, 902
Alw26I	GTCTC	2 cut(s)	256, 455
AlwI	GGATC	2 cut(s)	485, 740
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	5 cut(s)	15, 78, 346, 442, 874
ApeKI	GCWGC	2 cut(s)	65, 616
ApoI	RAATTY	2 cut(s)	322, 659
AseI	ATTAAT	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	200, 329, 572
BalI	TGGCCA	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	77, 628
BccI	CCATC	3 cut(s)	102, 338, 704
BciT130I	CCWGG	1 cut(s)	813
BciVI	GTATCC	1 cut(s)	271
BclI	TGATCA	1 cut(s)	904
BcoDI	GTCTC	2 cut(s)	256, 455
BfaI	CTAG	1 cut(s)	756
BfrI	CTTAAG	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	4 cut(s)	66, 69, 81, 617
BlsI	GCNGC	4 cut(s)	67, 70, 82, 618
Bme1390I	CCNGG	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	813
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	948
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	812, 844
BpuEI	CTTGAG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	256, 877
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 357, 883
Bse1I	ACTGG	4 cut(s)	18, 25, 81, 678
Bse3DI	GCAATG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	813
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	256, 877
BseGI	GGATG	4 cut(s)	101, 503, 715, 915
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	3 cut(s)	335, 357, 883
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	4 cut(s)	18, 25, 81, 678
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	77, 628
BseYI	CCCAGC	1 cut(s)	335
BshFI	GGCC	5 cut(s)	17, 80, 348, 444, 876
BshVI	ATCGAT	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	3 cut(s)	335, 357, 883
BsmAI	GTCTC	2 cut(s)	256, 455
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	5 cut(s)	17, 80, 348, 444, 876
Bso31I	GGTCTC	1 cut(s)	455
Bsp143I	GATC	6 cut(s)	477, 511, 529, 541, 745, 904
BspACI	CCGC	2 cut(s)	68, 81
BspANI	GGCC	5 cut(s)	17, 80, 348, 444, 876
BspCNI	CTCAG	1 cut(s)	521
BspDI	ATCGAT	1 cut(s)	525
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	485, 740
BspQI	GCTCTTC	1 cut(s)	447
BspTI	CTTAAG	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	4 cut(s)	18, 25, 81, 678
BssECI	CCNNGG	2 cut(s)	256, 877
BssMI	GATC	6 cut(s)	477, 511, 529, 541, 745, 904
BssT1I	CCWWGG	2 cut(s)	256, 877
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	2 cut(s)	590, 838
Bst6I	CTCTTC	3 cut(s)	447, 680, 835
BstAFI	CTTAAG	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	1 cut(s)	508
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	4 cut(s)	101, 503, 715, 915
BstKTI	GATC	6 cut(s)	480, 514, 532, 544, 748, 907
BstMAI	GTCTC	2 cut(s)	256, 455
BstMBI	GATC	6 cut(s)	477, 511, 529, 541, 745, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 367
BstNI	CCWGG	1 cut(s)	813
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	811
BstV1I	GCAGC	2 cut(s)	77, 628
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
Bsu15I	ATCGAT	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	5 cut(s)	17, 80, 348, 444, 876
BsuTUI	ATCGAT	1 cut(s)	525
BtsCI	GGATG	4 cut(s)	101, 503, 715, 915
BtsIMutI	CAGTG	3 cut(s)	11, 551, 745
Cac8I	GCNNGC	1 cut(s)	885
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	525
Csp6I	GTAC	2 cut(s)	74, 263
CviAII	CATG	3 cut(s)	224, 440, 613
CviQI	GTAC	2 cut(s)	74, 263
DdeI	CTNAG	1 cut(s)	508
DpnI	GATC	6 cut(s)	479, 513, 531, 543, 747, 906
DpnII	GATC	6 cut(s)	477, 511, 529, 541, 745, 904
DraI	TTTAAA	1 cut(s)	853
EaeI	YGGCCR	2 cut(s)	15, 78
Eam1104I	CTCTTC	3 cut(s)	447, 680, 835
EarI	CTCTTC	3 cut(s)	447, 680, 835
Eco130I	CCWWGG	2 cut(s)	256, 877
Eco31I	GGTCTC	1 cut(s)	455
Eco32I	GATATC	1 cut(s)	523
Eco57I	CTGAAG	4 cut(s)	174, 449, 641, 847
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoRII	CCWGG	1 cut(s)	811
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	256, 877
ErhI	CCWWGG	2 cut(s)	256, 877
FaeI	CATG	3 cut(s)	227, 443, 616
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 387, 419
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	3 cut(s)	223, 439, 612
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	4 cut(s)	66, 69, 81, 617
FokI	GGATG	4 cut(s)	88, 490, 722, 902
Fsp4HI	GCNGC	4 cut(s)	66, 69, 81, 617
FspBI	CTAG	1 cut(s)	756
GluI	GCNGC	4 cut(s)	66, 69, 81, 617
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	5 cut(s)	17, 80, 348, 444, 876
Hin1II	CATG	3 cut(s)	227, 443, 616
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	6 cut(s)	92, 169, 249, 383, 688, 722
HphI	GGTGA	3 cut(s)	200, 329, 572
Hpy188I	TCNGA	4 cut(s)	487, 511, 727, 866
Hpy188III	TCNNGA	5 cut(s)	105, 275, 300, 404, 533
HpyAV	CCTTC	3 cut(s)	423, 674, 700
HpyCH4III	ACNGT	2 cut(s)	590, 838
HpyCH4V	TGCA	4 cut(s)	128, 181, 223, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 367
HpyF3I	CTNAG	1 cut(s)	508
Hsp92II	CATG	3 cut(s)	227, 443, 616
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	6 cut(s)	477, 511, 529, 541, 745, 904
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	2 cut(s)	77, 628
LweI	GCATC	1 cut(s)	948
MaeI	CTAG	1 cut(s)	756
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	6 cut(s)	479, 513, 531, 543, 747, 906
MboI	GATC	6 cut(s)	477, 511, 529, 541, 745, 904
MboII	GAAGA	8 cut(s)	167, 244, 428, 464, 578, 697, 822, 879
MflI	RGATCY	1 cut(s)	745
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	6 cut(s)	51, 183, 322, 399, 659, 733
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	3 cut(s)	178, 258, 697
MmeI	TCCRAC	2 cut(s)	226, 606
MnlI	CCTC	4 cut(s)	358, 481, 517, 755
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	4 cut(s)	140, 198, 470, 852
MslI	CAYNNNNRTG	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	3 cut(s)	68, 335, 619
MspCI	CTTAAG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	813
MvaI	CCWGG	1 cut(s)	813
MwoI	GCNNNNNNNGC	2 cut(s)	77, 367
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	6 cut(s)	477, 511, 529, 541, 745, 904
NlaIII	CATG	3 cut(s)	227, 443, 616
NlaIV	GGNNCC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	92, 383, 722
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	67, 70, 82, 618
PleI	GAGTC	3 cut(s)	177, 257, 696
PpsI	GAGTC	3 cut(s)	177, 257, 696
PshBI	ATTAAT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	811
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	347
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	745
PvuII	CAGCTG	2 cut(s)	335, 619
RsaI	GTAC	2 cut(s)	75, 264
RsaNI	GTAC	2 cut(s)	74, 263
RseI	CAYNNNNRTG	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	4 cut(s)	140, 198, 470, 852
SatI	GCNGC	4 cut(s)	66, 69, 81, 617
Sau3AI	GATC	6 cut(s)	477, 511, 529, 541, 745, 904
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	3 cut(s)	178, 258, 697
ScrFI	CCNGG	1 cut(s)	813
SetI	ASST	7 cut(s)	316, 337, 459, 621, 654, 780, 904
SfaNI	GCATC	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	2 cut(s)	458, 469
SmoI	CTYRAG	2 cut(s)	458, 469
Sse9I	AATT	6 cut(s)	51, 183, 322, 399, 659, 733
SsiI	CCGC	2 cut(s)	68, 81
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	811
StyI	CCWWGG	2 cut(s)	256, 877
TaaI	ACNGT	2 cut(s)	590, 838
TaqI	TCGA	2 cut(s)	525, 691
TasI	AATT	6 cut(s)	51, 183, 322, 399, 659, 733
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	2 cut(s)	71, 83
TfiI	GAWTC	3 cut(s)	92, 383, 722
Tru1I	TTAA	4 cut(s)	140, 198, 470, 852
Tru9I	TTAA	4 cut(s)	140, 198, 470, 852
TscAI	CASTG	3 cut(s)	18, 551, 745
TseI	GCWGC	2 cut(s)	65, 616
TspDTI	ATGAA	4 cut(s)	90, 105, 428, 579
TspRI	CASTG	3 cut(s)	18, 551, 745
Van91I	CCANNNNNTGG	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	198
XagI	CCTNNNNNAGG	1 cut(s)	881
XapI	RAATTY	2 cut(s)	322, 659
XceI	RCATGY	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.