Rmu_sc0010460.1_g000011

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010460.1
Physical Location & Seq
Forward (+)
31877 .. 33987
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010460.1_g000011.1.cds

Sequence Viewer

Length: 1743 bp
atggagatattttcacttggtgatctctcaaaaactgtggggaagatgttgacagacatgtcaagtctttatgatgttggtcgccgtaaacgatcagcagggctattactcattgaccgtacactagatcttcttactccatgctgtcatggagattcacttgttgaccgtgtgttttcatccttgcctagtagggaaaatacagcatcctatactcaaataaaaacatcaaaaagccaactaaaacagggcccttcaaacctggaacgtgcttctcttgatgttcagataccacttgctaaaattctaattgaagaagattgcaagatagagagctttcggctattagaaagcattgaagcttttctatgtgggtgggattctggaaactctgcttctcaagttttagatctgagcaatctcaagaacaaaattcataatgagaagcttccccagtcagagaatgggcttctaagagggtctcttgtggccactgaaagttttcgaggaacaccatatttggaaactctactagataggaaaaccaaagatgggaccatactagtaaagaagtggcttcaagaagctcttcgtcgggagaatatctccgtgaatgtgaaaccccgtcctggttttgctacaaagtcagagttgcaagctatgacaaaagcactggccaaatcccagtcatcgttactgaaaaacaaaggaattattcagttggcagcggctgtactggccgcacttgatgaatctcattcatccagatgggaagcatttagcaatgcagagaaaatattaagtgtgagtgctgaagacacaagccagagtcttgctgtgcaaattggtgattttattaataagagtgctttgttgggattgcatggacagaagaatggaaaagttggagtctcccaaggggtactttcttttcaggatactttgtatcttatgatttctggatatatattagctggtgagaatttcccaacagctgggaatgatggccccttttcttggcaagaggagcaactattgaaagattctattgttgaagcaattcttgaaaacccttcaatagcaaaactgaagtttcttcatggcctaatagaagagcttgagaccaacttaagcaggatcaaatcagaggaaagcaaggggacatcctcagatcaaatagatatcgatgatcttgatgacgatcagtggggtaaatggggtgatgaagatgttgatgatacaaataacagtaaagagaaagtgtatgatgacatgcagctgaagttggagttgcgtgatagggtggataaccttttcaaattccttcacaagttatccagtttgaagagtcgaaacataccattgaaggatggggctttagattcggaaaataatttcagtggagatccatatgctagtagaggattactttataagcttctaacacgggtattgagcaagagtgatgttcctggtttggagtatcactcttctactgtggggcaactatttaaaagtggcttcagaagatttggccttgggcaggcaaaaccaagtttagctgatcaaaatgtcatccttgtatttgttattgggggcatcaatggtgtggaggttcgcgaagctcaagaggcattatctgaaagtggaagaccggatatagaaatgattcttggtggaacagctctcctaactcctaacgacatgcttgacttgctactggggaaatctagttatttttga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

580

Amino Acids

63.9

Weight (kDa)

5.29

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011362)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1434
AasI GACNNNNNNGTC 1 cut(s) 58
AccB7I CCANNNNNTGG 1 cut(s) 995
AccII CGCG 1 cut(s) 1620
AciI CCGC 2 cut(s) 728, 741
AclWI GGATC 2 cut(s) 1145, 1400
AcoI YGGCCR 3 cut(s) 489, 675, 738
AcsI RAATTY 4 cut(s) 303, 432, 982, 1319
AcuI CTGAAG 4 cut(s) 834, 1109, 1301, 1507
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 3 cut(s) 121, 735, 924
AfiI CCNNNNNNNGG 5 cut(s) 552, 629, 995, 1017, 1543
AflII CTTAAG 1 cut(s) 1129
AflIII ACRYGT 1 cut(s) 57
AhlI ACTAGT 1 cut(s) 562
AjnI CCWGG 3 cut(s) 261, 628, 1471
AjuI GAANNNNNNNTTGG 2 cut(s) 1656, 1688
Alw26I GTCTC 3 cut(s) 486, 916, 1115
AlwI GGATC 2 cut(s) 1145, 1400
AlwNI CAGNNNCTG 1 cut(s) 731
AoxI GGCC 7 cut(s) 250, 489, 675, 738, 1006, 1102, 1534
ApaI GGGCCC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 725, 1276
ApoI RAATTY 4 cut(s) 303, 432, 982, 1319
AseI ATTAAT 1 cut(s) 858
Asp700I GAANNNNTTC 5 cut(s) 363, 501, 588, 1059, 1668
AspS9I GGNCC 4 cut(s) 250, 251, 555, 1007
AsuHPI GGTGA 4 cut(s) 32, 860, 989, 1232
AvaII GGWCC 1 cut(s) 555
BaeGI GKGCMC 1 cut(s) 254
BalI TGGCCA 2 cut(s) 491, 677
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 822, 1657
BbvI GCAGC 2 cut(s) 737, 1288
BccI CCATC 4 cut(s) 545, 762, 998, 1364
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 3 cut(s) 263, 630, 1473
BciVI GTATCC 1 cut(s) 931
BclI TGATCA 1 cut(s) 1564
BcoDI GTCTC 3 cut(s) 486, 916, 1115
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 6 cut(s) 125, 189, 533, 563, 1416, 1731
BfrI CTTAAG 1 cut(s) 1129
BfuI GTATCC 1 cut(s) 931
BglII AGATCT 2 cut(s) 127, 409
BisI GCNGC 4 cut(s) 726, 729, 741, 1277
BlsI GCNGC 4 cut(s) 727, 730, 742, 1278
Bme1390I CCNGG 3 cut(s) 263, 630, 1473
Bme18I GGWCC 1 cut(s) 555
BmgT120I GGNCC 4 cut(s) 250, 251, 555, 1007
BmiI GGNNCC 3 cut(s) 252, 556, 1009
BmrFI CCNGG 3 cut(s) 263, 630, 1473
BmrI ACTGGG 3 cut(s) 448, 679, 1730
BmsI GCATC 2 cut(s) 215, 1608
BmuI ACTGGG 3 cut(s) 448, 679, 1730
BpiI GAAGAC 2 cut(s) 822, 1657
BplI GAGNNNNNCTC 4 cut(s) 590, 622, 1472, 1504
BpuEI CTTGAG 4 cut(s) 384, 407, 1139, 1611
Bsa29I ATCGAT 1 cut(s) 1185
BsaBI GATNNNNATC 1 cut(s) 1200
BsaI GGTCTC 2 cut(s) 486, 1115
BsaJI CCNNGG 2 cut(s) 916, 1537
BsaWI WCCGGW 1 cut(s) 1654
Bsc4I CCNNNNNNNGG 5 cut(s) 552, 629, 995, 1017, 1543
Bse1I ACTGG 6 cut(s) 454, 678, 685, 741, 1338, 1725
Bse3DI GCAATG 1 cut(s) 790
Bse8I GATNNNNATC 1 cut(s) 1200
BseBI CCWGG 3 cut(s) 263, 630, 1473
BseCI ATCGAT 1 cut(s) 1185
BseDI CCNNGG 2 cut(s) 916, 1537
BseGI GGATG 6 cut(s) 179, 206, 761, 1163, 1375, 1575
BseJI GATNNNNATC 1 cut(s) 1200
BseLI CCNNNNNNNGG 5 cut(s) 552, 629, 995, 1017, 1543
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 2 cut(s) 404, 1182
BseNI ACTGG 6 cut(s) 454, 678, 685, 741, 1338, 1725
BseRI GAGGAG 1 cut(s) 1040
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 2 cut(s) 737, 1288
BseYI CCCAGC 1 cut(s) 995
Bsh1236I CGCG 1 cut(s) 1620
BshFI GGCC 7 cut(s) 252, 491, 677, 740, 1008, 1104, 1536
BshVI ATCGAT 1 cut(s) 1185
BsiSI CCGG 1 cut(s) 1655
BslFI GGGAC 2 cut(s) 568, 1174
BslI CCNNNNNNNGG 5 cut(s) 552, 629, 995, 1017, 1543
BsmAI GTCTC 3 cut(s) 486, 916, 1115
BsmFI GGGAC 2 cut(s) 568, 1174
BsnI GGCC 7 cut(s) 252, 491, 677, 740, 1008, 1104, 1536
Bso31I GGTCTC 2 cut(s) 486, 1115
Bsp120I GGGCCC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 254
Bsp68I TCGCGA 1 cut(s) 1620
BspACI CCGC 2 cut(s) 728, 741
BspANI GGCC 7 cut(s) 252, 491, 677, 740, 1008, 1104, 1536
BspCNI CTCAG 2 cut(s) 405, 1181
BspDI ATCGAT 1 cut(s) 1185
BspFNI CGCG 1 cut(s) 1620
BspLI GGNNCC 3 cut(s) 252, 556, 1009
BspPI GGATC 2 cut(s) 1145, 1400
BspQI GCTCTTC 2 cut(s) 594, 1107
BspTI CTTAAG 1 cut(s) 1129
BspTNI GGTCTC 2 cut(s) 486, 1115
BsrDI GCAATG 1 cut(s) 790
BsrI ACTGG 6 cut(s) 454, 678, 685, 741, 1338, 1725
BssECI CCNNGG 2 cut(s) 916, 1537
BssT1I CCWWGG 2 cut(s) 916, 1537
Bst2UI CCWGG 3 cut(s) 263, 630, 1473
Bst4CI ACNGT 5 cut(s) 37, 119, 170, 1250, 1498
Bst6I CTCTTC 4 cut(s) 594, 1107, 1340, 1495
BstAFI CTTAAG 1 cut(s) 1129
BstC8I GCNNGC 2 cut(s) 657, 1545
BstDEI CTNAG 3 cut(s) 413, 473, 1168
BstENI CCTNNNNNAGG 1 cut(s) 1541
BstF5I GGATG 6 cut(s) 179, 206, 761, 1163, 1375, 1575
BstFNI CGCG 1 cut(s) 1620
BstMAI GTCTC 3 cut(s) 486, 916, 1115
BstMWI GCNNNNNNNGC 4 cut(s) 737, 1027, 1631, 1714
BstNI CCWGG 3 cut(s) 263, 630, 1473
BstNSI RCATGY 3 cut(s) 61, 1276, 1708
BstSCI CCNGG 3 cut(s) 261, 628, 1471
BstSLI GKGCMC 1 cut(s) 254
BstUI CGCG 1 cut(s) 1620
BstV1I GCAGC 2 cut(s) 737, 1288
BstV2I GAAGAC 2 cut(s) 822, 1657
BstX2I RGATCY 3 cut(s) 127, 409, 1405
BstYI RGATCY 3 cut(s) 127, 409, 1405
Bsu15I ATCGAT 1 cut(s) 1185
BsuI GTATCC 1 cut(s) 931
BsuRI GGCC 7 cut(s) 252, 491, 677, 740, 1008, 1104, 1536
BsuTUI ATCGAT 1 cut(s) 1185
BtsCI GGATG 6 cut(s) 179, 206, 761, 1163, 1375, 1575
BtsIMutI CAGTG 4 cut(s) 492, 671, 1211, 1405
BtuMI TCGCGA 1 cut(s) 1620
Cac8I GCNNGC 2 cut(s) 657, 1545
CaiI CAGNNNCTG 1 cut(s) 731
Cfr13I GGNCC 4 cut(s) 250, 251, 555, 1007
ClaI ATCGAT 1 cut(s) 1185
Csp6I GTAC 3 cut(s) 120, 734, 923
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 7 cut(s) 58, 141, 149, 884, 1100, 1273, 1705
CviQI GTAC 3 cut(s) 120, 734, 923
DdeI CTNAG 3 cut(s) 413, 473, 1168
DraI TTTAAA 1 cut(s) 1513
DraIII CACNNNGTG 1 cut(s) 20
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 3 cut(s) 489, 675, 738
Eam1104I CTCTTC 4 cut(s) 594, 1107, 1340, 1495
EarI CTCTTC 4 cut(s) 594, 1107, 1340, 1495
Eco130I CCWWGG 2 cut(s) 916, 1537
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 2 cut(s) 486, 1115
Eco32I GATATC 1 cut(s) 1183
Eco47I GGWCC 1 cut(s) 555
Eco57I CTGAAG 4 cut(s) 834, 1109, 1301, 1507
EcoNI CCTNNNNNAGG 1 cut(s) 1541
EcoO109I RGGNCCY 2 cut(s) 250, 251
EcoRII CCWGG 3 cut(s) 261, 628, 1471
EcoRV GATATC 1 cut(s) 1183
EcoT14I CCWWGG 2 cut(s) 916, 1537
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 2 cut(s) 916, 1537
FaeI CATG 7 cut(s) 61, 144, 152, 887, 1103, 1276, 1708
FalI AAGNNNNNCTT 6 cut(s) 573, 605, 909, 941, 1047, 1079
FaqI GGGAC 2 cut(s) 568, 1174
FatI CATG 7 cut(s) 57, 140, 148, 883, 1099, 1272, 1704
FauNDI CATATG 1 cut(s) 1411
FbaI TGATCA 1 cut(s) 1564
Fnu4HI GCNGC 4 cut(s) 726, 729, 741, 1277
FokI GGATG 6 cut(s) 166, 193, 748, 1150, 1382, 1562
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 4 cut(s) 726, 729, 741, 1277
FspBI CTAG 6 cut(s) 125, 189, 533, 563, 1416, 1731
GluI GCNGC 4 cut(s) 726, 729, 741, 1277
GsaI CCCAGC 1 cut(s) 999
HaeIII GGCC 7 cut(s) 252, 491, 677, 740, 1008, 1104, 1536
HapII CCGG 1 cut(s) 1655
Hin1II CATG 7 cut(s) 61, 144, 152, 887, 1103, 1276, 1708
HincII GTYRAC 2 cut(s) 51, 166
HindII GTYRAC 2 cut(s) 51, 166
HindIII AAGCTT 3 cut(s) 360, 446, 1436
HinfI GANTC 9 cut(s) 155, 380, 752, 829, 909, 1043, 1348, 1382, 1669
HpaII CCGG 1 cut(s) 1655
HphI GGTGA 4 cut(s) 32, 860, 989, 1232
Hpy166II GTNNAC 4 cut(s) 51, 89, 122, 166
Hpy188I TCNGA 9 cut(s) 288, 414, 460, 649, 1147, 1171, 1387, 1526, 1642
Hpy8I GTNNAC 4 cut(s) 51, 89, 122, 166
Hpy99I CGWCG 1 cut(s) 597
HpyAV CCTTC 4 cut(s) 264, 1083, 1334, 1360
HpyCH4III ACNGT 5 cut(s) 37, 119, 170, 1250, 1498
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 6 cut(s) 324, 655, 788, 841, 883, 1276
HpyF10VI GCNNNNNNNGC 4 cut(s) 737, 1027, 1631, 1714
HpyF3I CTNAG 3 cut(s) 413, 473, 1168
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 7 cut(s) 61, 144, 152, 887, 1103, 1276, 1708
Ksp22I TGATCA 1 cut(s) 1564
LguI GCTCTTC 2 cut(s) 594, 1107
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 2 cut(s) 737, 1288
LweI GCATC 2 cut(s) 215, 1608
MaeI CTAG 6 cut(s) 125, 189, 533, 563, 1416, 1731
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 693
MflI RGATCY 3 cut(s) 127, 409, 1405
MhlI GDGCHC 1 cut(s) 254
MlsI TGGCCA 2 cut(s) 491, 677
MluCI AATT 9 cut(s) 303, 309, 432, 711, 843, 982, 1059, 1319, 1393
MluNI TGGCCA 2 cut(s) 491, 677
MlyI GAGTC 3 cut(s) 838, 918, 1357
MmeI TCCRAC 2 cut(s) 886, 1266
MnlI CCTC 8 cut(s) 470, 500, 1018, 1141, 1177, 1415, 1606, 1624
Mox20I TGGCCA 2 cut(s) 491, 677
MroXI GAANNNNTTC 5 cut(s) 363, 501, 588, 1059, 1668
MscI TGGCCA 2 cut(s) 491, 677
MseI TTAA 4 cut(s) 800, 858, 1130, 1512
MslI CAYNNNNRTG 1 cut(s) 766
Msp20I TGGCCA 2 cut(s) 491, 677
MspA1I CMGCKG 3 cut(s) 728, 995, 1279
MspCI CTTAAG 1 cut(s) 1129
MspI CCGG 1 cut(s) 1655
MspR9I CCNGG 3 cut(s) 263, 630, 1473
MvaI CCWGG 3 cut(s) 263, 630, 1473
MvnI CGCG 1 cut(s) 1620
MwoI GCNNNNNNNGC 4 cut(s) 737, 1027, 1631, 1714
NdeI CATATG 1 cut(s) 1411
NlaIII CATG 7 cut(s) 61, 144, 152, 887, 1103, 1276, 1708
NlaIV GGNNCC 3 cut(s) 252, 556, 1009
NruI TCGCGA 1 cut(s) 1620
NspI RCATGY 3 cut(s) 61, 1276, 1708
PciI ACATGT 1 cut(s) 57
PciSI GCTCTTC 2 cut(s) 594, 1107
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PdmI GAANNNNTTC 5 cut(s) 363, 501, 588, 1059, 1668
PfeI GAWTC 6 cut(s) 155, 380, 752, 1043, 1382, 1669
PflMI CCANNNNNTGG 1 cut(s) 995
PkrI GCNGC 4 cut(s) 727, 730, 742, 1278
PleI GAGTC 3 cut(s) 837, 917, 1356
PpsI GAGTC 3 cut(s) 837, 917, 1356
PscI ACATGT 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 858
PsiI TTATAA 1 cut(s) 1434
Psp6I CCWGG 3 cut(s) 261, 628, 1471
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 3 cut(s) 261, 628, 1471
PspN4I GGNNCC 3 cut(s) 252, 556, 1009
PspOMI GGGCCC 1 cut(s) 250
PspPI GGNCC 4 cut(s) 250, 251, 555, 1007
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 3 cut(s) 127, 409, 1405
PvuII CAGCTG 2 cut(s) 995, 1279
RruI TCGCGA 1 cut(s) 1620
RsaI GTAC 3 cut(s) 121, 735, 924
RsaNI GTAC 3 cut(s) 120, 734, 923
RseI CAYNNNNRTG 1 cut(s) 766
SapI GCTCTTC 2 cut(s) 594, 1107
SaqAI TTAA 4 cut(s) 800, 858, 1130, 1512
SatI GCNGC 4 cut(s) 726, 729, 741, 1277
Sau96I GGNCC 4 cut(s) 250, 251, 555, 1007
SchI GAGTC 3 cut(s) 838, 918, 1357
ScrFI CCNGG 3 cut(s) 263, 630, 1473
SduI GDGCHC 1 cut(s) 254
SfaNI GCATC 2 cut(s) 215, 1608
SinI GGWCC 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 766
SmlI CTYRAG 5 cut(s) 399, 422, 1118, 1129, 1626
SmoI CTYRAG 5 cut(s) 399, 422, 1118, 1129, 1626
SpeI ACTAGT 1 cut(s) 562
Sse9I AATT 9 cut(s) 303, 309, 432, 711, 843, 982, 1059, 1319, 1393
SsiI CCGC 2 cut(s) 728, 741
SspI AATATT 1 cut(s) 798
SspMI CTAG 6 cut(s) 125, 189, 533, 563, 1416, 1731
StyD4I CCNGG 3 cut(s) 261, 628, 1471
StyI CCWWGG 2 cut(s) 916, 1537
TaaI ACNGT 5 cut(s) 37, 119, 170, 1250, 1498
TaiI ACGT 1 cut(s) 271
TaqI TCGA 3 cut(s) 505, 1185, 1351
TasI AATT 9 cut(s) 303, 309, 432, 711, 843, 982, 1059, 1319, 1393
TatI WGTACW 1 cut(s) 733
TauI GCSGC 2 cut(s) 731, 743
TfiI GAWTC 6 cut(s) 155, 380, 752, 1043, 1382, 1669
Tru1I TTAA 4 cut(s) 800, 858, 1130, 1512
Tru9I TTAA 4 cut(s) 800, 858, 1130, 1512
TscAI CASTG 4 cut(s) 499, 678, 1211, 1405
TseI GCWGC 2 cut(s) 725, 1276
TspDTI ATGAA 6 cut(s) 168, 425, 750, 765, 1088, 1239
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 4 cut(s) 499, 678, 1211, 1405
Van91I CCANNNNNTGG 1 cut(s) 995
Vha464I CTTAAG 1 cut(s) 1129
VpaK11BI GGWCC 1 cut(s) 555
VspI ATTAAT 1 cut(s) 858
XagI CCTNNNNNAGG 1 cut(s) 1541
XapI RAATTY 4 cut(s) 303, 432, 982, 1319
XceI RCATGY 3 cut(s) 61, 1276, 1708
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XmnI GAANNNNTTC 5 cut(s) 363, 501, 588, 1059, 1668
XspI CTAG 6 cut(s) 125, 189, 533, 563, 1416, 1731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.