Rh2DG369000

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
52218777 .. 52226425
7649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG369000.1

Sequence Viewer

Length: 1842 bp
ATGATTATCTGTCCTTTTTCACCAAGAGTCTTTGTTTTGCCTCCAGAAGGATCAGTTGCTGAAGCATACTTATCAGCTAAACATGAGGATGCCCTTAGTCCTGGATTACCCTCCTTAAGTACTGGGTTGCTTTCTGATGGTGATGATATTCCTCCTGGGGCAACTCTTACAGCAAATTTTCTTTACCATTTTGCGGCCAAGTTGGACCTGAAGATGGAGATATTTTCACTTGGTGATCTCTCAAAAACTGTGGGGAAGATGTTGATAGACATGTCAAGTCTTTATGATGTTGGTCGCCGTAAACGATCAGCAGGGCTATTACTCATTGACCGTACACTAGATCTTCTTACTCCATGCTGTCATGGAGATTCACTTGTTGACCGTGTGTTTTCATCCTTGCCTAGTAGGGAAAATACAGCATCCTATACTCAAATAAAAACATCAAAAAGCCAACTAAAACAGGGCCCTTCAAACCTGGAACGTGCTTCTCTTGATGTTCAGATACCACTTGCTAAAATTCTAATTGAAGAAGATTGCAAGATAGAGAGCTTTCGGCTATTAGAAAGCATTGAAGCTTTTCTATGTGGGTGGGATTCTGGAAACTCTGCTTCTCAAGTTTTAGATCTGAGCAATCTCAAGAACAAAATTCATAATGAGAAGCTTCCCCAGTCAGAGAATGGGCTTCTAAGAGGGTCTCTTGTGTCCACTGAAAGTTTTCGAGGAACACCATATTTGGAAACTCTACTAGATAGGAAAACCAAAGATGGGACCATACTAGTAAAGAAGTGGCTTCAAGAAGCTCTTCGTCGGGAGAATATCTCCGTGAATGTGAAACCCCGTCCTGGTTTTGCTACAAAGTCAGAGTTGCAAGCTATGACAAAAGCACTGGCCAAATCCCAGTCATCGTTACTGAAAAACAAAGGAATTATTCAGTTGGCAGCGGCTGTACTGGCCGCACTTGATGAATCTCATTCATCCAGATGGGAAGCATTTAGCAATGCAGAGAAAATATTAAGTGTGAGTGCTGAAGACACAAGCCAGAGTCTTGCTGTGCAAATTGGTGATTTTATTAATAAGAGTGCTTTGTTGGGATTGCATGGACAGAAGAATGGAAAAGTTGGAGTCTCCCAAGGGGTACTTTCTTTTCAGGATACTTTGTATCTTATGATTTCTGGATATATATTAGCTGGTGAGAATTTCCCAACAGCTGGGAATGATGGCCCCTTTTCTTGGCAAGAGGAGCAACTATTGAAAGATTCTATTGTTGAAGCAATTCTTGAAAACCCTTCAATAGCAAAACTGAAGTTTCTTCATGGCCTAATAGAAGAGCTTGAGACCAACTTAAGCAGGATCAAATCAGAGGAAAGCAAGGGGACATCCTCAGATCAAATAGATATCGATGATCTTGATGACGATCAGTGGGGTAAATGGGGTGATGAAGATGTTGATGATACAAATAACAGAAAAGAGAAAGTGTATGATGACATGCAGCTGAAGTTGGAGTTGCGTGATAGGGTGGATAACCTTTTCAAATTCCTTCACAAGTTATCCAGTTTGAAGAGTCGAAACATACCATTGAAGGATGGGGCTTTAGATTCGGAAAATAATTTCAGTGGAGATCCATATGCTAGTAGAGGATTACTTTATAAGCTTCTAACACGGGTATTGAGCAAGAGTGATGTTCCTGGTTTGGAGTATCACTCTTCTACTGTGGGGCAACTATTTAAAAGTGGCTTCAGAAGATTTGGCCTTGGGCAGGCAAAACCAAGTTTAGCTGATCAAAATGTCATCCTTGTATTTGTTATTGGGGGCATCAATGGTGTGGAGGTTTGTATTTCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

613

Amino Acids

67.33

Weight (kDa)

5.45

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011362)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1647
AccB7I CCANNNNNTGG 1 cut(s) 1208
AciI CCGC 3 cut(s) 194, 941, 954
AclWI GGATC 3 cut(s) 58, 1358, 1613
AcoI YGGCCR 3 cut(s) 195, 888, 951
AcsI RAATTY 5 cut(s) 175, 516, 645, 1195, 1532
AcuI CTGAAG 6 cut(s) 81, 230, 1047, 1322, 1514, 1720
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 4 cut(s) 121, 334, 948, 1137
AfiI CCNNNNNNNGG 8 cut(s) 47, 193, 214, 765, 842, 1208, 1230, 1756
AflII CTTAAG 2 cut(s) 115, 1342
AflIII ACRYGT 1 cut(s) 270
AhlI ACTAGT 1 cut(s) 775
AjnI CCWGG 5 cut(s) 100, 154, 474, 841, 1684
Alw26I GTCTC 3 cut(s) 699, 1129, 1328
AlwI GGATC 3 cut(s) 58, 1358, 1613
AlwNI CAGNNNCTG 2 cut(s) 59, 944
AoxI GGCC 7 cut(s) 195, 463, 888, 951, 1219, 1315, 1747
ApaI GGGCCC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 938, 1489
ApoI RAATTY 5 cut(s) 175, 516, 645, 1195, 1532
AseI ATTAAT 1 cut(s) 1071
Asp700I GAANNNNTTC 4 cut(s) 576, 714, 801, 1272
AspS9I GGNCC 5 cut(s) 205, 463, 464, 768, 1220
AsuHPI GGTGA 6 cut(s) 12, 152, 245, 1073, 1202, 1445
AvaII GGWCC 2 cut(s) 205, 768
BaeGI GKGCMC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 890
BanII GRGCYC 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 1035
BbvI GCAGC 2 cut(s) 950, 1501
BccI CCATC 6 cut(s) 131, 208, 758, 975, 1211, 1577
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 5 cut(s) 102, 156, 476, 843, 1686
BciVI GTATCC 1 cut(s) 1144
BclI TGATCA 1 cut(s) 1777
BcoDI GTCTC 3 cut(s) 699, 1129, 1328
BcuI ACTAGT 1 cut(s) 775
BfaI CTAG 5 cut(s) 338, 402, 746, 776, 1629
BfrI CTTAAG 2 cut(s) 115, 1342
BfuI GTATCC 1 cut(s) 1144
BglII AGATCT 2 cut(s) 340, 622
BisI GCNGC 5 cut(s) 195, 939, 942, 954, 1490
BlsI GCNGC 5 cut(s) 196, 940, 943, 955, 1491
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 5 cut(s) 102, 156, 476, 843, 1686
Bme18I GGWCC 2 cut(s) 205, 768
BmgT120I GGNCC 5 cut(s) 205, 463, 464, 768, 1220
BmiI GGNNCC 3 cut(s) 465, 769, 1222
BmrFI CCNGG 5 cut(s) 102, 156, 476, 843, 1686
BmrI ACTGGG 3 cut(s) 132, 661, 892
BmsI GCATC 3 cut(s) 79, 428, 1821
BmuI ACTGGG 3 cut(s) 132, 661, 892
BpiI GAAGAC 1 cut(s) 1035
BplI GAGNNNNNCTC 4 cut(s) 803, 835, 1685, 1717
BpmI CTGGAG 1 cut(s) 27
BpuEI CTTGAG 3 cut(s) 597, 620, 1352
Bsa29I ATCGAT 1 cut(s) 1398
BsaBI GATNNNNATC 1 cut(s) 1413
BsaI GGTCTC 2 cut(s) 699, 1328
BsaJI CCNNGG 3 cut(s) 155, 1129, 1750
Bsc4I CCNNNNNNNGG 8 cut(s) 47, 193, 214, 765, 842, 1208, 1230, 1756
Bse1I ACTGG 6 cut(s) 127, 667, 891, 898, 954, 1551
Bse3DI GCAATG 1 cut(s) 1003
Bse8I GATNNNNATC 1 cut(s) 1413
BseBI CCWGG 5 cut(s) 102, 156, 476, 843, 1686
BseCI ATCGAT 1 cut(s) 1398
BseDI CCNNGG 3 cut(s) 155, 1129, 1750
BseGI GGATG 7 cut(s) 94, 392, 419, 974, 1376, 1588, 1788
BseJI GATNNNNATC 1 cut(s) 1413
BseLI CCNNNNNNNGG 8 cut(s) 47, 193, 214, 765, 842, 1208, 1230, 1756
BseMI GCAATG 1 cut(s) 1003
BseMII CTCAG 2 cut(s) 617, 1395
BseNI ACTGG 6 cut(s) 127, 667, 891, 898, 954, 1551
BseRI GAGGAG 1 cut(s) 1253
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 2 cut(s) 950, 1501
BseYI CCCAGC 1 cut(s) 1208
BshFI GGCC 7 cut(s) 197, 465, 890, 953, 1221, 1317, 1749
BshVI ATCGAT 1 cut(s) 1398
BslFI GGGAC 2 cut(s) 781, 1387
BslI CCNNNNNNNGG 8 cut(s) 47, 193, 214, 765, 842, 1208, 1230, 1756
BsmAI GTCTC 3 cut(s) 699, 1129, 1328
BsmFI GGGAC 2 cut(s) 781, 1387
BsnI GGCC 7 cut(s) 197, 465, 890, 953, 1221, 1317, 1749
Bso31I GGTCTC 2 cut(s) 699, 1328
Bsp120I GGGCCC 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 467
BspACI CCGC 3 cut(s) 194, 941, 954
BspANI GGCC 7 cut(s) 197, 465, 890, 953, 1221, 1317, 1749
BspCNI CTCAG 2 cut(s) 618, 1394
BspDI ATCGAT 1 cut(s) 1398
BspLI GGNNCC 3 cut(s) 465, 769, 1222
BspPI GGATC 3 cut(s) 58, 1358, 1613
BspQI GCTCTTC 2 cut(s) 807, 1320
BspTI CTTAAG 2 cut(s) 115, 1342
BspTNI GGTCTC 2 cut(s) 699, 1328
BsrDI GCAATG 1 cut(s) 1003
BsrI ACTGG 6 cut(s) 127, 667, 891, 898, 954, 1551
BssECI CCNNGG 3 cut(s) 155, 1129, 1750
BssT1I CCWWGG 2 cut(s) 1129, 1750
Bst2UI CCWGG 5 cut(s) 102, 156, 476, 843, 1686
Bst4CI ACNGT 4 cut(s) 250, 332, 383, 1711
Bst6I CTCTTC 4 cut(s) 807, 1320, 1553, 1708
BstAFI CTTAAG 2 cut(s) 115, 1342
BstC8I GCNNGC 2 cut(s) 870, 1758
BstDEI CTNAG 4 cut(s) 95, 626, 686, 1381
BstENI CCTNNNNNAGG 2 cut(s) 45, 1754
BstF5I GGATG 7 cut(s) 94, 392, 419, 974, 1376, 1588, 1788
BstMAI GTCTC 3 cut(s) 699, 1129, 1328
BstMWI GCNNNNNNNGC 2 cut(s) 950, 1240
BstNI CCWGG 5 cut(s) 102, 156, 476, 843, 1686
BstNSI RCATGY 2 cut(s) 274, 1489
BstSCI CCNGG 5 cut(s) 100, 154, 474, 841, 1684
BstSLI GKGCMC 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 950, 1501
BstV2I GAAGAC 1 cut(s) 1035
BstX2I RGATCY 3 cut(s) 340, 622, 1618
BstYI RGATCY 3 cut(s) 340, 622, 1618
Bsu15I ATCGAT 1 cut(s) 1398
BsuI GTATCC 1 cut(s) 1144
BsuRI GGCC 7 cut(s) 197, 465, 890, 953, 1221, 1317, 1749
BsuTUI ATCGAT 1 cut(s) 1398
BtsCI GGATG 7 cut(s) 94, 392, 419, 974, 1376, 1588, 1788
BtsIMutI CAGTG 4 cut(s) 705, 884, 1424, 1618
Cac8I GCNNGC 2 cut(s) 870, 1758
CaiI CAGNNNCTG 2 cut(s) 59, 944
Cfr13I GGNCC 5 cut(s) 205, 463, 464, 768, 1220
ClaI ATCGAT 1 cut(s) 1398
Csp6I GTAC 4 cut(s) 120, 333, 947, 1136
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviAII CATG 7 cut(s) 83, 271, 354, 362, 1097, 1313, 1486
CviQI GTAC 4 cut(s) 120, 333, 947, 1136
DdeI CTNAG 4 cut(s) 95, 626, 686, 1381
DraI TTTAAA 1 cut(s) 1726
DraIII CACNNNGTG 1 cut(s) 233
EaeI YGGCCR 3 cut(s) 195, 888, 951
Eam1104I CTCTTC 4 cut(s) 807, 1320, 1553, 1708
EarI CTCTTC 4 cut(s) 807, 1320, 1553, 1708
Eco130I CCWWGG 2 cut(s) 1129, 1750
Eco24I GRGCYC 1 cut(s) 467
Eco31I GGTCTC 2 cut(s) 699, 1328
Eco32I GATATC 1 cut(s) 1396
Eco47I GGWCC 2 cut(s) 205, 768
Eco57I CTGAAG 6 cut(s) 81, 230, 1047, 1322, 1514, 1720
EcoNI CCTNNNNNAGG 2 cut(s) 45, 1754
EcoO109I RGGNCCY 2 cut(s) 463, 464
EcoRII CCWGG 5 cut(s) 100, 154, 474, 841, 1684
EcoRV GATATC 1 cut(s) 1396
EcoT14I CCWWGG 2 cut(s) 1129, 1750
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 2 cut(s) 1129, 1750
FaeI CATG 7 cut(s) 86, 274, 357, 365, 1100, 1316, 1489
FalI AAGNNNNNCTT 6 cut(s) 786, 818, 1122, 1154, 1260, 1292
FaqI GGGAC 2 cut(s) 781, 1387
FatI CATG 7 cut(s) 82, 270, 353, 361, 1096, 1312, 1485
FauNDI CATATG 1 cut(s) 1624
FbaI TGATCA 1 cut(s) 1777
Fnu4HI GCNGC 5 cut(s) 195, 939, 942, 954, 1490
FokI GGATG 7 cut(s) 101, 379, 406, 961, 1363, 1595, 1775
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 5 cut(s) 195, 939, 942, 954, 1490
FspBI CTAG 5 cut(s) 338, 402, 746, 776, 1629
GluI GCNGC 5 cut(s) 195, 939, 942, 954, 1490
GsaI CCCAGC 1 cut(s) 1212
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 7 cut(s) 197, 465, 890, 953, 1221, 1317, 1749
Hin1II CATG 7 cut(s) 86, 274, 357, 365, 1100, 1316, 1489
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 3 cut(s) 573, 659, 1649
HinfI GANTC 9 cut(s) 27, 368, 593, 965, 1042, 1122, 1256, 1561, 1595
HphI GGTGA 6 cut(s) 12, 152, 245, 1073, 1202, 1445
Hpy166II GTNNAC 4 cut(s) 302, 335, 379, 705
Hpy188I TCNGA 9 cut(s) 136, 501, 627, 673, 862, 1360, 1384, 1600, 1739
Hpy8I GTNNAC 4 cut(s) 302, 335, 379, 705
Hpy99I CGWCG 1 cut(s) 810
HpyAV CCTTC 5 cut(s) 41, 477, 1296, 1547, 1573
HpyCH4III ACNGT 4 cut(s) 250, 332, 383, 1711
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 6 cut(s) 537, 868, 1001, 1054, 1096, 1489
HpyF10VI GCNNNNNNNGC 2 cut(s) 950, 1240
HpyF3I CTNAG 4 cut(s) 95, 626, 686, 1381
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 7 cut(s) 86, 274, 357, 365, 1100, 1316, 1489
Ksp22I TGATCA 1 cut(s) 1777
LguI GCTCTTC 2 cut(s) 807, 1320
LmnI GCTCC 1 cut(s) 1240
Lsp1109I GCAGC 2 cut(s) 950, 1501
LweI GCATC 3 cut(s) 79, 428, 1821
MaeI CTAG 5 cut(s) 338, 402, 746, 776, 1629
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 906
MflI RGATCY 3 cut(s) 340, 622, 1618
MhlI GDGCHC 1 cut(s) 467
MlsI TGGCCA 1 cut(s) 890
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 4 cut(s) 36, 1051, 1131, 1570
MmeI TCCRAC 3 cut(s) 183, 1099, 1479
Mox20I TGGCCA 1 cut(s) 890
MroXI GAANNNNTTC 4 cut(s) 576, 714, 801, 1272
MscI TGGCCA 1 cut(s) 890
MseI TTAA 6 cut(s) 116, 1013, 1071, 1343, 1725, 1840
MslI CAYNNNNRTG 2 cut(s) 87, 979
Msp20I TGGCCA 1 cut(s) 890
MspA1I CMGCKG 3 cut(s) 941, 1208, 1492
MspCI CTTAAG 2 cut(s) 115, 1342
MspR9I CCNGG 5 cut(s) 102, 156, 476, 843, 1686
MvaI CCWGG 5 cut(s) 102, 156, 476, 843, 1686
MwoI GCNNNNNNNGC 2 cut(s) 950, 1240
NdeI CATATG 1 cut(s) 1624
NlaIII CATG 7 cut(s) 86, 274, 357, 365, 1100, 1316, 1489
NlaIV GGNNCC 3 cut(s) 465, 769, 1222
NspI RCATGY 2 cut(s) 274, 1489
PciI ACATGT 1 cut(s) 270
PciSI GCTCTTC 2 cut(s) 807, 1320
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PdmI GAANNNNTTC 4 cut(s) 576, 714, 801, 1272
PfeI GAWTC 5 cut(s) 368, 593, 965, 1256, 1595
PflMI CCANNNNNTGG 1 cut(s) 1208
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 5 cut(s) 196, 940, 943, 955, 1491
PleI GAGTC 4 cut(s) 35, 1050, 1130, 1569
PpsI GAGTC 4 cut(s) 35, 1050, 1130, 1569
PscI ACATGT 1 cut(s) 270
PshBI ATTAAT 1 cut(s) 1071
PsiI TTATAA 1 cut(s) 1647
Psp6I CCWGG 5 cut(s) 100, 154, 474, 841, 1684
PspFI CCCAGC 1 cut(s) 1208
PspGI CCWGG 5 cut(s) 100, 154, 474, 841, 1684
PspN4I GGNNCC 3 cut(s) 465, 769, 1222
PspOMI GGGCCC 1 cut(s) 463
PspPI GGNCC 5 cut(s) 205, 463, 464, 768, 1220
PstNI CAGNNNCTG 2 cut(s) 59, 944
PsuI RGATCY 3 cut(s) 340, 622, 1618
PvuII CAGCTG 2 cut(s) 1208, 1492
RsaI GTAC 4 cut(s) 121, 334, 948, 1137
RsaNI GTAC 4 cut(s) 120, 333, 947, 1136
RseI CAYNNNNRTG 2 cut(s) 87, 979
SapI GCTCTTC 2 cut(s) 807, 1320
SaqAI TTAA 6 cut(s) 116, 1013, 1071, 1343, 1725, 1840
SatI GCNGC 5 cut(s) 195, 939, 942, 954, 1490
Sau96I GGNCC 5 cut(s) 205, 463, 464, 768, 1220
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 4 cut(s) 36, 1051, 1131, 1570
ScrFI CCNGG 5 cut(s) 102, 156, 476, 843, 1686
SduI GDGCHC 1 cut(s) 467
SfaNI GCATC 3 cut(s) 79, 428, 1821
SinI GGWCC 2 cut(s) 205, 768
SmiMI CAYNNNNRTG 2 cut(s) 87, 979
SmlI CTYRAG 5 cut(s) 115, 612, 635, 1331, 1342
SmoI CTYRAG 5 cut(s) 115, 612, 635, 1331, 1342
SpeI ACTAGT 1 cut(s) 775
SsiI CCGC 3 cut(s) 194, 941, 954
SspI AATATT 1 cut(s) 1011
SspMI CTAG 5 cut(s) 338, 402, 746, 776, 1629
StyD4I CCNGG 5 cut(s) 100, 154, 474, 841, 1684
StyI CCWWGG 2 cut(s) 1129, 1750
TaaI ACNGT 4 cut(s) 250, 332, 383, 1711
TaiI ACGT 1 cut(s) 484
TaqI TCGA 3 cut(s) 718, 1398, 1564
TatI WGTACW 2 cut(s) 119, 946
TauI GCSGC 3 cut(s) 197, 944, 956
TfiI GAWTC 5 cut(s) 368, 593, 965, 1256, 1595
Tru1I TTAA 6 cut(s) 116, 1013, 1071, 1343, 1725, 1840
Tru9I TTAA 6 cut(s) 116, 1013, 1071, 1343, 1725, 1840
TscAI CASTG 4 cut(s) 712, 891, 1424, 1618
TseI GCWGC 2 cut(s) 938, 1489
TspDTI ATGAA 6 cut(s) 381, 638, 963, 978, 1301, 1452
TspGWI ACGGA 1 cut(s) 811
TspRI CASTG 4 cut(s) 712, 891, 1424, 1618
Van91I CCANNNNNTGG 1 cut(s) 1208
Vha464I CTTAAG 2 cut(s) 115, 1342
VpaK11BI GGWCC 2 cut(s) 205, 768
VspI ATTAAT 1 cut(s) 1071
XagI CCTNNNNNAGG 2 cut(s) 45, 1754
XapI RAATTY 5 cut(s) 175, 516, 645, 1195, 1532
XceI RCATGY 2 cut(s) 274, 1489
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmnI GAANNNNTTC 4 cut(s) 576, 714, 801, 1272
XspI CTAG 5 cut(s) 338, 402, 746, 776, 1629
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.