Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7989814.1

Orthogroup ID

OG0008414

Physical Location & Seq

Genomic Coordinates Reverse (-)

69 .. 444

Gene Structure 376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7989814.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggcggcaacgaagggcaaggtggtttacaacatttacagagctttgagccgtggcctgtctccatttctctacctccaccttcactggcgtaaactccgaggcctcgagcaccctctccgctggccggaacgcctcggccgcccctccctccctcgcccgccgggcccactcctctggttccacgccgtctccttaggaatgtctgcgattcctgtcatcaaagaatgcattcagcggaggcctgatttaaccattctgatgaccactacgacgtcgtctgcattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

Glycos_transf_N

Protein Analysis

96

Amino Acids

10.95

Weight (kDa)

11.21

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03770 AT5G03770 AT5G03770
fragaria_vesca	FvH4_6g17520
malus_domestica	MD14G1093900.v1.1
prunus_persica	Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1
pyrus_communis	pycom14g09140
rosa_chinensis	RchiOBHm_Chr3g0471781
rosa_laevigata	RLG00000024135
rosa_multiflora	Rmu_co7989814.1_g000001 Rmu_sc0011517.1_g000007
rosa_roxburghii	Rroxscaffold_6G00409570
rosa_rugosa	Rorug03G0119700
rosa_samantha	Rh3AG170900 Rh3BG196600 Rh3CG187500 Rh3DG178200
rosa_wichuraiana	Rw3G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	278
AciI	CCGC	5 cut(s)	5, 121, 142, 161, 238
AcoI	YGGCCR	2 cut(s)	125, 139
AcyI	GRCGYC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	66, 196
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	6 cut(s)	55, 103, 125, 139, 166, 242
ApaI	GGGCCC	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	166, 167
AsuC2I	CCSGG	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	114
BceAI	ACGGC	2 cut(s)	36, 173
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	66, 196
BglI	GCCNNNNNGGC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	6, 142
BlsI	GCNGC	2 cut(s)	7, 143
Bme1390I	CCNGG	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	166, 167
BmiI	GGNNCC	2 cut(s)	168, 182
BmrFI	CCNGG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	3 cut(s)	52, 100, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	92
Bse21I	CCTNAGG	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	52, 100, 136
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	6 cut(s)	57, 105, 127, 141, 168, 244
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	128, 164
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	66, 196
BsmBI	CGTCTC	1 cut(s)	196
BsmI	GAATGC	2 cut(s)	231, 233
BsnI	GGCC	6 cut(s)	57, 105, 127, 141, 168, 244
BsoBI	CYCGRG	1 cut(s)	107
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	114, 170
BspACI	CCGC	5 cut(s)	5, 121, 142, 161, 238
BspANI	GGCC	6 cut(s)	57, 105, 127, 141, 168, 244
BspLI	GGNNCC	2 cut(s)	168, 182
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	52, 100, 136
BssNI	GRCGYC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	125, 161
BstDEI	CTNAG	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	52
BstMAI	GTCTC	2 cut(s)	66, 196
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 165
BstSCI	CCNGG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	196
BsuRI	GGCC	6 cut(s)	57, 105, 127, 141, 168, 244
BtgI	CCRYGG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	125, 161
Cfr13I	GGNCC	2 cut(s)	166, 167
CviJI	RGCY	8 cut(s)	44, 51, 57, 105, 127, 141, 168, 244
CviKI_1	RGCY	8 cut(s)	44, 51, 57, 105, 127, 141, 168, 244
DdeI	CTNAG	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	125, 139
EagI	CGGCCG	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	139
Eco147I	AGGCCT	2 cut(s)	105, 244
Eco24I	GRGCYC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	107
EcoT22I	ATGCAT	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	196
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	6, 142
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	6, 142
GluI	GCNGC	2 cut(s)	6, 142
HaeIII	GGCC	6 cut(s)	57, 105, 127, 141, 168, 244
HapII	CCGG	2 cut(s)	128, 164
Hin1I	GRCGYC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	128, 164
Hpy166II	GTNNAC	2 cut(s)	28, 95
Hpy188I	TCNGA	2 cut(s)	101, 261
Hpy8I	GTNNAC	2 cut(s)	28, 95
Hpy99I	CGWCG	2 cut(s)	277, 280
HpyAV	CCTTC	2 cut(s)	7, 92
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	231, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 165
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	275
Hsp92I	GRCGYC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	71, 73, 109, 141, 163, 177, 228, 258
MaeII	ACGT	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	114, 170
Mph1103I	ATGCAT	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	2 cut(s)	123, 238
MspI	CCGG	2 cut(s)	128, 164
MspR9I	CCNGG	1 cut(s)	165
Mva1269I	GAATGC	2 cut(s)	231, 233
MwoI	GCNNNNNNNGC	2 cut(s)	141, 165
NciI	CCSGG	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	168, 182
NmeAIII	GCCGAG	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	107
PceI	AGGCCT	2 cut(s)	105, 244
PctI	GAATGC	2 cut(s)	231, 233
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	7, 143
PspN4I	GGNNCC	2 cut(s)	168, 182
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	166, 167
PspXI	VCTCGAGB	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	6, 142
Sau96I	GGNCC	2 cut(s)	166, 167
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	114, 170
SetI	ASST	5 cut(s)	24, 46, 78, 84, 278
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SseBI	AGGCCT	2 cut(s)	105, 244
SsiI	CCGC	5 cut(s)	5, 121, 142, 161, 238
StuI	AGGCCT	2 cut(s)	105, 244
StyD4I	CCNGG	1 cut(s)	163
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	2 cut(s)	8, 144
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	92
TspRI	CASTG	1 cut(s)	92
Tth111I	GACNNNGTC	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	231
ZraI	GACGTC	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.