3-deoxy-D-manno-octulosonic acid
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G03770 AT5G03770 AT5G03770 |
| fragaria_vesca | FvH4_6g17520 |
| malus_domestica | MD14G1093900.v1.1 |
| prunus_persica | Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 |
| pyrus_communis | pycom14g09140 |
| rosa_chinensis | RchiOBHm_Chr3g0471781 |
| rosa_laevigata | RLG00000024135 |
| rosa_multiflora | Rmu_co7989814.1_g000001 Rmu_sc0011517.1_g000007 |
| rosa_roxburghii | Rroxscaffold_6G00409570 |
| rosa_rugosa | Rorug03G0119700 |
| rosa_samantha | Rh3AG170900 Rh3BG196600 Rh3CG187500 Rh3DG178200 |
| rosa_wichuraiana | Rw3G016930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 71 |
| AclWI | GGATC | 1 cut(s) | 497 |
| AcsI | RAATTY | 3 cut(s) | 138, 195, 261 |
| AfaI | GTAC | 3 cut(s) | 167, 173, 280 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AgsI | TTSAA | 5 cut(s) | 94, 124, 346, 518, 526 |
| AluBI | AGCT | 2 cut(s) | 398, 480 |
| AluI | AGCT | 2 cut(s) | 398, 480 |
| Alw26I | GTCTC | 1 cut(s) | 236 |
| AlwI | GGATC | 1 cut(s) | 497 |
| ApeKI | GCWGC | 5 cut(s) | 48, 359, 389, 392, 395 |
| ApoI | RAATTY | 3 cut(s) | 138, 195, 261 |
| AsuHPI | GGTGA | 2 cut(s) | 360, 473 |
| BbvI | GCAGC | 5 cut(s) | 60, 346, 376, 404, 407 |
| BccI | CCATC | 2 cut(s) | 68, 226 |
| BcoDI | GTCTC | 1 cut(s) | 236 |
| BfaI | CTAG | 1 cut(s) | 236 |
| BfmI | CTRYAG | 2 cut(s) | 390, 405 |
| BisI | GCNGC | 5 cut(s) | 49, 360, 390, 393, 396 |
| BlsI | GCNGC | 5 cut(s) | 50, 361, 391, 394, 397 |
| BmsI | GCATC | 2 cut(s) | 94, 503 |
| BsaJI | CCNNGG | 1 cut(s) | 222 |
| Bse1I | ACTGG | 1 cut(s) | 313 |
| Bse3DI | GCAATG | 2 cut(s) | 384, 430 |
| BseDI | CCNNGG | 1 cut(s) | 222 |
| BseGI | GGATG | 4 cut(s) | 79, 106, 218, 505 |
| BseMI | GCAATG | 2 cut(s) | 384, 430 |
| BseNI | ACTGG | 1 cut(s) | 313 |
| BseXI | GCAGC | 5 cut(s) | 60, 346, 376, 404, 407 |
| BsmAI | GTCTC | 1 cut(s) | 236 |
| BsmBI | CGTCTC | 1 cut(s) | 236 |
| Bsp1407I | TGTACA | 1 cut(s) | 165 |
| Bsp143I | GATC | 3 cut(s) | 30, 451, 502 |
| BspACI | CCGC | 1 cut(s) | 71 |
| BspHI | TCATGA | 1 cut(s) | 265 |
| BspMAI | CTGCAG | 2 cut(s) | 394, 409 |
| BspPI | GGATC | 1 cut(s) | 497 |
| BsrDI | GCAATG | 2 cut(s) | 384, 430 |
| BsrGI | TGTACA | 1 cut(s) | 165 |
| BsrI | ACTGG | 1 cut(s) | 313 |
| BssECI | CCNNGG | 1 cut(s) | 222 |
| BssMI | GATC | 3 cut(s) | 30, 451, 502 |
| BssT1I | CCWWGG | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 2 cut(s) | 176, 212 |
| BstAUI | TGTACA | 1 cut(s) | 165 |
| BstC8I | GCNNGC | 1 cut(s) | 478 |
| BstF5I | GGATG | 4 cut(s) | 79, 106, 218, 505 |
| BstKTI | GATC | 3 cut(s) | 33, 454, 505 |
| BstMAI | GTCTC | 1 cut(s) | 236 |
| BstMBI | GATC | 3 cut(s) | 30, 451, 502 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 395, 404 |
| BstNSI | RCATGY | 2 cut(s) | 172, 329 |
| BstSFI | CTRYAG | 2 cut(s) | 390, 405 |
| BstV1I | GCAGC | 5 cut(s) | 60, 346, 376, 404, 407 |
| BtsCI | GGATG | 4 cut(s) | 79, 106, 218, 505 |
| BtsI | GCAGTG | 1 cut(s) | 58 |
| BtsIMutI | CAGTG | 1 cut(s) | 58 |
| Cac8I | GCNNGC | 1 cut(s) | 478 |
| CciI | TCATGA | 1 cut(s) | 265 |
| Csp6I | GTAC | 3 cut(s) | 166, 172, 279 |
| CviAII | CATG | 5 cut(s) | 169, 266, 299, 326, 355 |
| CviJI | RGCY | 5 cut(s) | 217, 359, 398, 418, 480 |
| CviKI_1 | RGCY | 5 cut(s) | 217, 359, 398, 418, 480 |
| CviQI | GTAC | 3 cut(s) | 166, 172, 279 |
| DpnI | GATC | 3 cut(s) | 32, 453, 504 |
| DpnII | GATC | 3 cut(s) | 30, 451, 502 |
| Eco130I | CCWWGG | 1 cut(s) | 222 |
| EcoT14I | CCWWGG | 1 cut(s) | 222 |
| ErhI | CCWWGG | 1 cut(s) | 222 |
| Esp3I | CGTCTC | 1 cut(s) | 236 |
| FaeI | CATG | 5 cut(s) | 172, 269, 302, 329, 358 |
| FatI | CATG | 5 cut(s) | 168, 265, 298, 325, 354 |
| Fnu4HI | GCNGC | 5 cut(s) | 49, 360, 390, 393, 396 |
| FokI | GGATG | 4 cut(s) | 86, 113, 205, 512 |
| Fsp4HI | GCNGC | 5 cut(s) | 49, 360, 390, 393, 396 |
| FspBI | CTAG | 1 cut(s) | 236 |
| GluI | GCNGC | 5 cut(s) | 49, 360, 390, 393, 396 |
| Hin1II | CATG | 5 cut(s) | 172, 269, 302, 329, 358 |
| HincII | GTYRAC | 1 cut(s) | 331 |
| HindII | GTYRAC | 1 cut(s) | 331 |
| HindIII | AAGCTT | 1 cut(s) | 478 |
| HinfI | GANTC | 1 cut(s) | 514 |
| HphI | GGTGA | 2 cut(s) | 360, 473 |
| Hpy166II | GTNNAC | 1 cut(s) | 331 |
| Hpy188I | TCNGA | 4 cut(s) | 35, 145, 499, 511 |
| Hpy188III | TCNNGA | 2 cut(s) | 266, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 331 |
| HpyCH4III | ACNGT | 2 cut(s) | 176, 212 |
| HpyCH4IV | ACGT | 1 cut(s) | 379 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 392, 407 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 395, 404 |
| HpySE526I | ACGT | 1 cut(s) | 379 |
| Hsp92II | CATG | 5 cut(s) | 172, 269, 302, 329, 358 |
| Kzo9I | GATC | 3 cut(s) | 30, 451, 502 |
| LpnPI | CCDG | 2 cut(s) | 70, 294 |
| Lsp1109I | GCAGC | 5 cut(s) | 60, 346, 376, 404, 407 |
| LweI | GCATC | 2 cut(s) | 94, 503 |
| MaeI | CTAG | 1 cut(s) | 236 |
| MaeII | ACGT | 1 cut(s) | 379 |
| MaeIII | GTNAC | 1 cut(s) | 461 |
| MalI | GATC | 3 cut(s) | 32, 453, 504 |
| MboI | GATC | 3 cut(s) | 30, 451, 502 |
| MboII | GAAGA | 2 cut(s) | 422, 452 |
| MluCI | AATT | 6 cut(s) | 36, 138, 195, 261, 272, 291 |
| MmeI | TCCRAC | 2 cut(s) | 78, 519 |
| MnlI | CCTC | 3 cut(s) | 49, 494, 517 |
| MseI | TTAA | 1 cut(s) | 401 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 395, 404 |
| NdeII | GATC | 3 cut(s) | 30, 451, 502 |
| NlaIII | CATG | 5 cut(s) | 172, 269, 302, 329, 358 |
| NmuCI | GTSAC | 1 cut(s) | 461 |
| NspI | RCATGY | 2 cut(s) | 172, 329 |
| PagI | TCATGA | 1 cut(s) | 265 |
| PciI | ACATGT | 1 cut(s) | 168 |
| PfeI | GAWTC | 1 cut(s) | 514 |
| PkrI | GCNGC | 5 cut(s) | 50, 361, 391, 394, 397 |
| PscI | ACATGT | 1 cut(s) | 168 |
| PstI | CTGCAG | 2 cut(s) | 394, 409 |
| RsaI | GTAC | 3 cut(s) | 167, 173, 280 |
| RsaNI | GTAC | 3 cut(s) | 166, 172, 279 |
| SaqAI | TTAA | 1 cut(s) | 401 |
| SatI | GCNGC | 5 cut(s) | 49, 360, 390, 393, 396 |
| Sau3AI | GATC | 3 cut(s) | 30, 451, 502 |
| SetI | ASST | 6 cut(s) | 60, 228, 280, 382, 400, 482 |
| SfaNI | GCATC | 2 cut(s) | 94, 503 |
| SfcI | CTRYAG | 2 cut(s) | 390, 405 |
| Sse9I | AATT | 6 cut(s) | 36, 138, 195, 261, 272, 291 |
| SsiI | CCGC | 1 cut(s) | 71 |
| SspMI | CTAG | 1 cut(s) | 236 |
| StyI | CCWWGG | 1 cut(s) | 222 |
| TaaI | ACNGT | 2 cut(s) | 176, 212 |
| TaiI | ACGT | 1 cut(s) | 382 |
| TaqI | TCGA | 1 cut(s) | 110 |
| TasI | AATT | 6 cut(s) | 36, 138, 195, 261, 272, 291 |
| TatI | WGTACW | 1 cut(s) | 165 |
| TfiI | GAWTC | 1 cut(s) | 514 |
| Tru1I | TTAA | 1 cut(s) | 401 |
| Tru9I | TTAA | 1 cut(s) | 401 |
| TscAI | CASTG | 1 cut(s) | 58 |
| TseFI | GTSAC | 1 cut(s) | 461 |
| TseI | GCWGC | 5 cut(s) | 48, 359, 389, 392, 395 |
| Tsp45I | GTSAC | 1 cut(s) | 461 |
| TspDTI | ATGAA | 6 cut(s) | 144, 219, 254, 257, 373, 453 |
| TspRI | CASTG | 1 cut(s) | 58 |
| XapI | RAATTY | 3 cut(s) | 138, 195, 261 |
| XceI | RCATGY | 2 cut(s) | 172, 329 |
| XspI | CTAG | 1 cut(s) | 236 |