Rh3AG170900

3-deoxy-D-manno-octulosonic acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008414
Physical Location & Seq
Reverse (-)
15832463 .. 15837619
5157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG170900.1

Sequence Viewer

Length: 954 bp
ATGGCGGCAACGAAGGGCAAGGTGGTTTACAACATTTACAGAGCTTTGAGCCATGGCCTGTCTCCATTTCTCTACCTCCACCTTCACTTGCGTAAACTCCGAGGCCTCGAGCACCCTCTCCGCTGGCCGGAACGCCTCGGCCGCCCCTCCCTCCCTCGCCCGCCGGGCCCACTCCTCTGGTTCCACGCCGTCTCATTAGGTGAAGGAATGTCTGCGATTCCTGTCATCAAAGAATGCATTCAGCGGAGGCCTGATTTAACCATTCTGATGACCACTACGACGTCGTCTGCATTTGAAGTAATAAGGAAGCGTCTTCCAACTAGTGTGATTCATCAGTTTGCGCCGATTGATACCCCTTCTGCTATGGACACATTCCTTGGTCACTGGAAGCCAAATGCAATTGTGATAATGGAGAGTGAACTGTGGCCGAATTTGATCATCGGTGCTTCAGAAAAGGGTATCATGCTGGTGTTGTTAAATGCACGGGTATCTACTAAATCTTTTAAACGTTGGTCGGGACCAGTGCTTCTTCCACTTATTTCGTTGATGCTCTCAAAGTTTTCATTGATTGCTCCATTGAGCACTATGCAAGCAATCCACTTTCAGCTACTGCATGCCCCACCTTTTGTCATCAACTTTTCAGTCGTTGAAGAATTTGACATGTGTGAGGGAGAGATCAGAAGTATAGAAGATTTGACGGTACACCTTGCCCACAGGCAGGTTTGGATGGCTTCTTCCATACATAAGGGGGAAGAAGAAGTAATACTAGGCATTCACAAAGTGCTCATGCAAGAATATCCCGATCTGTTCACAATTATTGTGCCTCGACATCCACAGCATGGAAAAGAGATTGCTGATAAATTGTGGAGAGAAGGGCATGGCGTAGCTTTGAGGTCTCAGCATGATAAACTTGTCGGAGGAACTAATATATTGGTGGTGGACACATTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00540 ko01100 map00540 map01100
Pfam Domains
Protein Families
Glycos_transf_N

Protein Analysis

317

Amino Acids

35.7

Weight (kDa)

9.23

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_N PF04413 41 - 209 9.6e-53 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 709
AccB7I CCANNNNNTGG 1 cut(s) 839
AciI CCGC 5 cut(s) 5, 121, 142, 161, 244
AclI AACGTT 1 cut(s) 508
AcoI YGGCCR 3 cut(s) 125, 139, 425
AcsI RAATTY 2 cut(s) 430, 653
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 281
AdeI CACNNNGTG 1 cut(s) 781
AfaI GTAC 1 cut(s) 702
AfiI CCNNNNNNNGG 3 cut(s) 127, 718, 839
AflIII ACRYGT 1 cut(s) 660
AgsI TTSAA 2 cut(s) 296, 650
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 3 cut(s) 44, 607, 887
AluI AGCT 3 cut(s) 44, 607, 887
Alw21I GWGCWC 3 cut(s) 114, 584, 786
Alw26I GTCTC 3 cut(s) 66, 196, 900
AlwNI CAGNNNCTG 1 cut(s) 610
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 7 cut(s) 55, 103, 125, 139, 166, 248, 425
ApaI GGGCCC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 430, 653
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 3 cut(s) 166, 167, 518
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 170
BarI GAAGNNNNNNTAC 2 cut(s) 747, 779
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 3 cut(s) 114, 584, 786
BccI CCATC 1 cut(s) 721
BceAI ACGGC 1 cut(s) 173
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 3 cut(s) 66, 196, 900
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 2 cut(s) 321, 767
BfuAI ACCTGC 1 cut(s) 709
BglI GCCNNNNNGGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 6, 142
BlsI GCNGC 2 cut(s) 7, 143
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 518
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 166, 167, 518
BmiI GGNNCC 3 cut(s) 168, 182, 519
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 4 cut(s) 52, 100, 136, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 718, 839
Bse1I ACTGG 2 cut(s) 389, 521
BseDI CCNNGG 4 cut(s) 52, 100, 136, 376
BseGI GGATG 2 cut(s) 732, 829
BseLI CCNNNNNNNGG 3 cut(s) 127, 718, 839
BseMII CTCAG 1 cut(s) 911
BseNI ACTGG 2 cut(s) 389, 521
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 7 cut(s) 57, 105, 127, 141, 168, 250, 427
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 3 cut(s) 114, 584, 786
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 2 cut(s) 128, 164
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 127, 718, 839
BsmAI GTCTC 3 cut(s) 66, 196, 900
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 531
BsmI GAATGC 3 cut(s) 237, 239, 771
BsnI GGCC 7 cut(s) 57, 105, 127, 141, 168, 250, 427
Bso31I GGTCTC 1 cut(s) 900
BsoBI CYCGRG 1 cut(s) 107
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 4 cut(s) 114, 170, 584, 786
Bsp143I GATC 3 cut(s) 435, 675, 802
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 5 cut(s) 5, 121, 142, 161, 244
BspANI GGCC 7 cut(s) 57, 105, 127, 141, 168, 250, 427
BspCNI CTCAG 1 cut(s) 910
BspLI GGNNCC 3 cut(s) 168, 182, 519
BspMI ACCTGC 1 cut(s) 709
BspTNI GGTCTC 1 cut(s) 900
BsrI ACTGG 2 cut(s) 389, 521
BssECI CCNNGG 4 cut(s) 52, 100, 136, 376
BssMI GATC 3 cut(s) 435, 675, 802
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 52, 376
Bst4CI ACNGT 2 cut(s) 423, 700
BstACI GRCGYC 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 125, 161, 591, 615
BstDEI CTNAG 1 cut(s) 897
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 2 cut(s) 732, 829
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 3 cut(s) 438, 678, 805
BstMAI GTCTC 3 cut(s) 66, 196, 900
BstMBI GATC 3 cut(s) 435, 675, 802
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 141, 165
BstNSI RCATGY 2 cut(s) 617, 664
BstSCI CCNGG 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 177
BstZI CGGCCG 1 cut(s) 139
BsuRI GGCC 7 cut(s) 57, 105, 127, 141, 168, 250, 427
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 2 cut(s) 732, 829
BtsIMutI CAGTG 2 cut(s) 382, 528
BveI ACCTGC 1 cut(s) 709
Cac8I GCNNGC 4 cut(s) 125, 161, 591, 615
CaiI CAGNNNCTG 1 cut(s) 610
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 3 cut(s) 166, 167, 518
CseI GACGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 701
CviAII CATG 8 cut(s) 53, 463, 614, 661, 787, 839, 878, 902
CviQI GTAC 1 cut(s) 701
DdeI CTNAG 1 cut(s) 897
DpnI GATC 3 cut(s) 437, 677, 804
DpnII GATC 3 cut(s) 435, 675, 802
DraI TTTAAA 1 cut(s) 505
DraIII CACNNNGTG 1 cut(s) 781
EaeI YGGCCR 3 cut(s) 125, 139, 425
EagI CGGCCG 1 cut(s) 139
EclXI CGGCCG 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 52, 376
Eco147I AGGCCT 2 cut(s) 105, 250
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 900
Eco47I GGWCC 1 cut(s) 518
Eco52I CGGCCG 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 52, 376
EcoT22I ATGCAT 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 2 cut(s) 52, 376
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 8 cut(s) 56, 466, 617, 664, 790, 842, 881, 905
FaqI GGGAC 1 cut(s) 531
FatI CATG 8 cut(s) 52, 462, 613, 660, 786, 838, 877, 901
FauI CCCGC 1 cut(s) 168
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 6, 142
FokI GGATG 2 cut(s) 739, 816
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 6, 142
FspBI CTAG 2 cut(s) 321, 767
GlaI GCGC 1 cut(s) 342
GluI GCNGC 2 cut(s) 6, 142
HaeIII GGCC 7 cut(s) 57, 105, 127, 141, 168, 250, 427
HapII CCGG 2 cut(s) 128, 164
HgaI GACGC 1 cut(s) 299
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 8 cut(s) 56, 466, 617, 664, 790, 842, 881, 905
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 2 cut(s) 217, 328
HpaII CCGG 2 cut(s) 128, 164
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 6 cut(s) 28, 95, 419, 703, 810, 940
Hpy188I TCNGA 5 cut(s) 101, 267, 451, 680, 917
Hpy188III TCNNGA 2 cut(s) 516, 800
Hpy8I GTNNAC 6 cut(s) 28, 95, 419, 703, 810, 940
Hpy99I CGWCG 2 cut(s) 283, 286
HpyAV CCTTC 5 cut(s) 7, 92, 197, 366, 866
HpyCH4III ACNGT 2 cut(s) 423, 700
HpyCH4IV ACGT 2 cut(s) 281, 508
HpyCH4V TGCA 7 cut(s) 237, 290, 398, 482, 589, 613, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 165
HpyF3I CTNAG 1 cut(s) 897
HpySE526I ACGT 2 cut(s) 281, 508
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 8 cut(s) 56, 466, 617, 664, 790, 842, 881, 905
HspAI GCGC 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 3 cut(s) 435, 675, 802
LmnI GCTCC 1 cut(s) 577
LweI GCATC 1 cut(s) 537
MaeI CTAG 2 cut(s) 321, 767
MaeII ACGT 2 cut(s) 281, 508
MaeIII GTNAC 1 cut(s) 380
MalI GATC 3 cut(s) 437, 677, 804
MboI GATC 3 cut(s) 435, 675, 802
MboII GAAGA 7 cut(s) 305, 521, 662, 701, 726, 764, 767
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 4 cut(s) 114, 170, 584, 786
MluCI AATT 5 cut(s) 399, 430, 653, 813, 860
MmeI TCCRAC 2 cut(s) 341, 895
Mph1103I ATGCAT 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 3 cut(s) 257, 476, 504
MslI CAYNNNNRTG 2 cut(s) 266, 467
MspA1I CMGCKG 2 cut(s) 123, 244
MspI CCGG 2 cut(s) 128, 164
MspR9I CCNGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 3 cut(s) 237, 239, 771
MwoI GCNNNNNNNGC 2 cut(s) 141, 165
NciI CCSGG 1 cut(s) 165
NcoI CCATGG 1 cut(s) 52
NdeII GATC 3 cut(s) 435, 675, 802
NlaIII CATG 8 cut(s) 56, 466, 617, 664, 790, 842, 881, 905
NlaIV GGNNCC 3 cut(s) 168, 182, 519
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 239
NspI RCATGY 2 cut(s) 617, 664
PaeI GCATGC 1 cut(s) 617
PaeR7I CTCGAG 1 cut(s) 107
PceI AGGCCT 2 cut(s) 105, 250
PciI ACATGT 1 cut(s) 660
PctI GAATGC 3 cut(s) 237, 239, 771
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 217, 328
PflFI GACNNNGTC 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 839
PkrI GCNGC 2 cut(s) 7, 143
PscI ACATGT 1 cut(s) 660
Psp1406I AACGTT 1 cut(s) 508
PspN4I GGNNCC 3 cut(s) 168, 182, 519
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 3 cut(s) 166, 167, 518
PspXI VCTCGAGB 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 610
PsyI GACNNNGTC 1 cut(s) 283
RsaI GTAC 1 cut(s) 702
RsaNI GTAC 1 cut(s) 701
RseI CAYNNNNRTG 2 cut(s) 266, 467
SaqAI TTAA 3 cut(s) 257, 476, 504
SatI GCNGC 2 cut(s) 6, 142
Sau3AI GATC 3 cut(s) 435, 675, 802
Sau96I GGNCC 3 cut(s) 166, 167, 518
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 4 cut(s) 114, 170, 584, 786
SfaNI GCATC 1 cut(s) 537
Sfr274I CTCGAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 518
SlaI CTCGAG 1 cut(s) 107
SmiMI CAYNNNNRTG 2 cut(s) 266, 467
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 320
SphI GCATGC 1 cut(s) 617
Sse9I AATT 5 cut(s) 399, 430, 653, 813, 860
SseBI AGGCCT 2 cut(s) 105, 250
SsiI CCGC 5 cut(s) 5, 121, 142, 161, 244
SspMI CTAG 2 cut(s) 321, 767
StuI AGGCCT 2 cut(s) 105, 250
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 52, 376
TaaI ACNGT 2 cut(s) 423, 700
TaiI ACGT 2 cut(s) 284, 511
TaqI TCGA 2 cut(s) 108, 826
TasI AATT 5 cut(s) 399, 430, 653, 813, 860
TauI GCSGC 2 cut(s) 8, 144
TfiI GAWTC 2 cut(s) 217, 328
Tru1I TTAA 3 cut(s) 257, 476, 504
Tru9I TTAA 3 cut(s) 257, 476, 504
TscAI CASTG 2 cut(s) 389, 528
TseFI GTSAC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 320, 552
TspRI CASTG 2 cut(s) 389, 528
Tth111I GACNNNGTC 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 2 cut(s) 430, 653
XceI RCATGY 2 cut(s) 617, 664
XhoI CTCGAG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 2 cut(s) 321, 767
ZraI GACGTC 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.