Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011517.1

Orthogroup ID

OG0008414

Physical Location & Seq

Genomic Coordinates Forward (+)

18597 .. 19414

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011517.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggcggcaacgaagggcaaggtggtttacaacatttacagagctttgagccgtggcctgtctccatttctctacctccaccttcactggcgtaaactccgaggcctcgagcaccctctccgctggccggaacgcctcggccgcccctccctccctcgcccgccgggcccactcctctggttccacgccgtctccttaggtgaaggaatgtctgcgattcctgtcatcaaagaatgcattcagcggaggcctgatttaaccattctgatgaccactacgacgtcgtctgcatttgaagtaataaggaagcgtcttccaactagtgtgattcatcagtttgcgccgattgataccccttctgctatggacacattccttggtcactggaagccaaatgcaattgtgttaatggagagtgaactgtggccgaatttgatcatcggtgcttcagaaaagggtgtaagtattatgtctcaaatatgtgctttcctgatttatgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

Glycos_transf_N

Protein Analysis

167

Amino Acids

18.88

Weight (kDa)

9.94

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03770 AT5G03770 AT5G03770
fragaria_vesca	FvH4_6g17520
malus_domestica	MD14G1093900.v1.1
prunus_persica	Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1 Prupe.7G120300_v2.0.a1
pyrus_communis	pycom14g09140
rosa_chinensis	RchiOBHm_Chr3g0471781
rosa_laevigata	RLG00000024135
rosa_multiflora	Rmu_co7989814.1_g000001 Rmu_sc0011517.1_g000007
rosa_roxburghii	Rroxscaffold_6G00409570
rosa_rugosa	Rorug03G0119700
rosa_samantha	Rh3AG170900 Rh3BG196600 Rh3CG187500 Rh3DG178200
rosa_wichuraiana	Rw3G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	284
AciI	CCGC	5 cut(s)	5, 121, 142, 161, 244
AcoI	YGGCCR	3 cut(s)	125, 139, 425
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	320
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	3 cut(s)	66, 196, 477
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	7 cut(s)	55, 103, 125, 139, 166, 248, 425
ApaI	GGGCCC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	166, 167
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	114
BceAI	ACGGC	2 cut(s)	36, 173
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	3 cut(s)	66, 196, 477
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	1 cut(s)	321
BglI	GCCNNNNNGGC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	6, 142
BlsI	GCNGC	2 cut(s)	7, 143
Bme1390I	CCNGG	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	166, 167
BmiI	GGNNCC	2 cut(s)	168, 182
BmrFI	CCNGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	4 cut(s)	52, 100, 136, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	92, 389
Bse21I	CCTNAGG	1 cut(s)	196
BseDI	CCNNGG	4 cut(s)	52, 100, 136, 376
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	92, 389
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	7 cut(s)	57, 105, 127, 141, 168, 250, 427
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	128, 164
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	3 cut(s)	66, 196, 477
BsmBI	CGTCTC	1 cut(s)	196
BsmI	GAATGC	2 cut(s)	237, 239
BsnI	GGCC	7 cut(s)	57, 105, 127, 141, 168, 250, 427
BsoBI	CYCGRG	1 cut(s)	107
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	114, 170
Bsp143I	GATC	1 cut(s)	435
BspACI	CCGC	5 cut(s)	5, 121, 142, 161, 244
BspANI	GGCC	7 cut(s)	57, 105, 127, 141, 168, 250, 427
BspLI	GGNNCC	2 cut(s)	168, 182
BsrI	ACTGG	2 cut(s)	92, 389
BssECI	CCNNGG	4 cut(s)	52, 100, 136, 376
BssMI	GATC	1 cut(s)	435
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	125, 161
BstDEI	CTNAG	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	3 cut(s)	66, 196, 477
BstMBI	GATC	1 cut(s)	435
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 165
BstSCI	CCNGG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	196
BsuRI	GGCC	7 cut(s)	57, 105, 127, 141, 168, 250, 427
BtgI	CCRYGG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	85, 382
Cac8I	GCNNGC	2 cut(s)	125, 161
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	166, 167
CseI	GACGC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EaeI	YGGCCR	3 cut(s)	125, 139, 425
EagI	CGGCCG	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	376
Eco147I	AGGCCT	2 cut(s)	105, 250
Eco24I	GRGCYC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	376
Esp3I	CGTCTC	1 cut(s)	196
FaiI	YATR	4 cut(s)	365, 470, 481, 498
FauI	CCCGC	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	6, 142
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	6, 142
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	6, 142
HaeIII	GGCC	7 cut(s)	57, 105, 127, 141, 168, 250, 427
HapII	CCGG	2 cut(s)	128, 164
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	217, 328
HpaII	CCGG	2 cut(s)	128, 164
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	28, 95, 419
Hpy188I	TCNGA	3 cut(s)	101, 267, 451
Hpy188III	TCNNGA	1 cut(s)	490
Hpy8I	GTNNAC	3 cut(s)	28, 95, 419
Hpy99I	CGWCG	2 cut(s)	283, 286
HpyAV	CCTTC	4 cut(s)	7, 92, 197, 366
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	237, 290, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 165
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	281
HspAI	GCGC	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	435
LpnPI	CCDG	9 cut(s)	71, 73, 109, 141, 163, 177, 234, 264, 370
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	1 cut(s)	305
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	114, 170
MluCI	AATT	2 cut(s)	399, 430
MmeI	TCCRAC	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	257, 407
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	2 cut(s)	123, 244
MspI	CCGG	2 cut(s)	128, 164
MspR9I	CCNGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	237, 239
MwoI	GCNNNNNNNGC	2 cut(s)	141, 165
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	168, 182
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	380
NsiI	ATGCAT	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	107
PceI	AGGCCT	2 cut(s)	105, 250
PctI	GAATGC	2 cut(s)	237, 239
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	217, 328
PflFI	GACNNNGTC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	7, 143
PspN4I	GGNNCC	2 cut(s)	168, 182
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	166, 167
PspXI	VCTCGAGB	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	257, 407
SatI	GCNGC	2 cut(s)	6, 142
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	2 cut(s)	166, 167
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	114, 170
SetI	ASST	6 cut(s)	24, 46, 78, 84, 202, 284
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	2 cut(s)	399, 430
SseBI	AGGCCT	2 cut(s)	105, 250
SsiI	CCGC	5 cut(s)	5, 121, 142, 161, 244
SspMI	CTAG	1 cut(s)	321
StuI	AGGCCT	2 cut(s)	105, 250
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	399, 430
TauI	GCSGC	2 cut(s)	8, 144
TfiI	GAWTC	2 cut(s)	217, 328
Tru1I	TTAA	2 cut(s)	257, 407
Tru9I	TTAA	2 cut(s)	257, 407
TscAI	CASTG	2 cut(s)	92, 389
TseFI	GTSAC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	92, 389
Tth111I	GACNNNGTC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	430
XhoI	CTCGAG	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	1 cut(s)	321
ZraI	GACGTC	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.