Rmu_co8029192.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8029192.1
OG0019510
Physical Location & Seq
Reverse (-)
1 .. 532
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8029192.1_g000001.1.cds

Sequence Viewer

Length: 323 bp
atggtgagccctatctgcatggccaattcgattctgacaacttctcatcaaccatggcccaaactggttgcggcgttcatagcagctcctatccacgccctctacaacggccgccgcgtgcggttaggacaactggtgttgggtgccctctaccgtactctataccaggccaccatgcatcctttcgagactagcatttctggccctttttggattcttgatttctggattcaaacttactttccattcttccgcagcaacgatatttcattgctaccaccagctgacgcccttcttggtcaatggctttgtcgcgaggcgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

107

Amino Acids

12.15

Weight (kDa)

8.77

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccII CGCG 2 cut(s) 117, 315
AciI CCGC 5 cut(s) 71, 112, 115, 121, 253
AcoI YGGCCR 2 cut(s) 21, 109
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 157
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 2 cut(s) 86, 284
AluI AGCT 2 cut(s) 86, 284
Alw26I GTCTC 1 cut(s) 182
AoxI GGCC 5 cut(s) 21, 56, 109, 168, 202
ApeKI GCWGC 2 cut(s) 83, 255
AspS9I GGNCC 2 cut(s) 57, 203
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 23
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 95, 267
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 192
BisI GCNGC 5 cut(s) 72, 84, 112, 115, 256
BlsI GCNGC 5 cut(s) 73, 85, 113, 116, 257
Bme1390I CCNGG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 57, 203
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 69, 138
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 69, 138
BseSI GKGCMC 1 cut(s) 148
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 95, 267
Bsh1236I CGCG 2 cut(s) 117, 315
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 5 cut(s) 23, 58, 111, 170, 204
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 5 cut(s) 23, 58, 111, 170, 204
Bsp1286I GDGCHC 2 cut(s) 11, 148
Bsp19I CCATGG 1 cut(s) 53
Bsp68I TCGCGA 1 cut(s) 315
BspACI CCGC 5 cut(s) 71, 112, 115, 121, 253
BspANI GGCC 5 cut(s) 23, 58, 111, 170, 204
BspFNI CGCG 2 cut(s) 117, 315
BspLI GGNNCC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 2 cut(s) 69, 138
BssECI CCNNGG 1 cut(s) 53
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 2 cut(s) 117, 315
BstMAI GTCTC 1 cut(s) 182
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 15, 80, 201
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 2 cut(s) 117, 315
BstV1I GCAGC 2 cut(s) 95, 267
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 5 cut(s) 23, 58, 111, 170, 204
BtgI CCRYGG 1 cut(s) 53
BtsCI GGATG 1 cut(s) 178
BtuMI TCGCGA 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 57, 203
CseI GACGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 156
CviAII CATG 3 cut(s) 19, 54, 175
CviJI RGCY 9 cut(s) 9, 23, 58, 86, 111, 170, 204, 284, 307
CviKI_1 RGCY 9 cut(s) 9, 23, 58, 86, 111, 170, 204, 284, 307
CviQI GTAC 1 cut(s) 156
EaeI YGGCCR 2 cut(s) 21, 109
EagI CGGCCG 1 cut(s) 109
EclXI CGGCCG 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 11
Eco52I CGGCCG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 22, 57, 178
FaiI YATR 5 cut(s) 20, 55, 80, 163, 176
FatI CATG 3 cut(s) 18, 53, 174
Fnu4HI GCNGC 5 cut(s) 72, 84, 112, 115, 256
FokI GGATG 1 cut(s) 165
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 5 cut(s) 72, 84, 112, 115, 256
FspBI CTAG 1 cut(s) 192
GluI GCNGC 5 cut(s) 72, 84, 112, 115, 256
HaeIII GGCC 5 cut(s) 23, 58, 111, 170, 204
HgaI GACGC 1 cut(s) 296
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 3 cut(s) 22, 57, 178
HinfI GANTC 3 cut(s) 31, 214, 229
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 4 cut(s) 187, 218, 226, 314
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 18, 178
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 80, 201
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 3 cut(s) 22, 57, 178
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 7 cut(s) 50, 119, 152, 179, 186, 211, 294
Lsp1109I GCAGC 2 cut(s) 95, 267
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 192
MboII GAAGA 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 11, 148
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 1 cut(s) 25
MluNI TGGCCA 1 cut(s) 23
MnlI CCTC 3 cut(s) 110, 158, 310
Mox20I TGGCCA 1 cut(s) 23
Mph1103I ATGCAT 1 cut(s) 180
MscI TGGCCA 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 2 cut(s) 117, 315
MwoI GCNNNNNNNGC 3 cut(s) 15, 80, 201
NcoI CCATGG 1 cut(s) 53
NlaIII CATG 3 cut(s) 22, 57, 178
NlaIV GGNNCC 1 cut(s) 145
NruI TCGCGA 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 3 cut(s) 31, 214, 229
PkrI GCNGC 5 cut(s) 73, 85, 113, 116, 257
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 57, 203
PvuII CAGCTG 1 cut(s) 284
RruI TCGCGA 1 cut(s) 315
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SatI GCNGC 5 cut(s) 72, 84, 112, 115, 256
Sau96I GGNCC 2 cut(s) 57, 203
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 11, 148
SetI ASST 2 cut(s) 88, 286
SfaNI GCATC 1 cut(s) 187
Sse9I AATT 1 cut(s) 25
SsiI CCGC 5 cut(s) 71, 112, 115, 121, 253
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 29, 186
TasI AATT 1 cut(s) 25
TauI GCSGC 3 cut(s) 74, 114, 117
TfiI GAWTC 3 cut(s) 31, 214, 229
TseI GCWGC 2 cut(s) 83, 255
TspDTI ATGAA 2 cut(s) 67, 258
XspI CTAG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.