Rmu_sc0009799.1_g000002

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009799.1
OG0019510
Physical Location & Seq
Forward (+)
11549 .. 12004
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009799.1_g000002.1.cds

Sequence Viewer

Length: 456 bp
atggtccaaaccggtcgcagcgctcacagcagctcctatccgcggtggctgacctattaccgcagagagcacaatgcgacaggtggaattacttttctggagaactggctctgcaagttcatcttctgcacctctgccagcaaacccactagtccttggacttttctggcaacggccctctataatggccgccgcgtaggactaggacaaccagtgttgggcgccctctaccgcactctataccaggccaccatgcaccattttgagactagcatttctggccctttttggatcctcgatttctggattcaaacatactttccatattttcgctgcgacgatatctcgctgcttccaccggctgatcaacttttgggtcaatggcttagccgcgaggaaaggtacacatcccctccctattctgagtgcttcacatatctgtaccttctgcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

151

Amino Acids

17.7

Weight (kDa)

8.36

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccII CGCG 3 cut(s) 43, 195, 393
AciI CCGC 7 cut(s) 41, 43, 61, 190, 193, 232, 391
AclWI GGATC 2 cut(s) 286, 299
AcoI YGGCCR 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 404, 443
AfeI AGCGCT 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 42, 218
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 1 cut(s) 311
AhlI ACTAGT 1 cut(s) 149
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 2 cut(s) 286, 299
Aor51HI AGCGCT 1 cut(s) 22
AoxI GGCC 4 cut(s) 174, 187, 246, 280
ApeKI GCWGC 4 cut(s) 18, 30, 333, 349
AsiGI ACCGGT 1 cut(s) 11
AspLEI GCGC 2 cut(s) 23, 224
AspS9I GGNCC 3 cut(s) 4, 175, 281
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 4 cut(s) 30, 42, 320, 336
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 260
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 3 cut(s) 150, 203, 270
BfoI RGCGCY 2 cut(s) 24, 225
BisI GCNGC 7 cut(s) 19, 31, 190, 193, 334, 350, 391
BlpI GCTNAGC 1 cut(s) 386
BlsI GCNGC 7 cut(s) 20, 32, 191, 194, 335, 351, 392
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 3 cut(s) 4, 175, 281
BmiI GGNNCC 2 cut(s) 223, 293
BmrFI CCNGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 41, 155
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 218
Bse118I RCCGGY 2 cut(s) 11, 358
Bse1I ACTGG 2 cut(s) 110, 212
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 41, 155
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 2 cut(s) 42, 218
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 2 cut(s) 110, 212
BseXI GCAGC 4 cut(s) 30, 42, 320, 336
BsgI GTGCAG 2 cut(s) 112, 434
Bsh1236I CGCG 3 cut(s) 43, 195, 393
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 4 cut(s) 176, 189, 248, 282
BshNI GGYRCC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 2 cut(s) 12, 359
BslI CCNNNNNNNGG 2 cut(s) 42, 218
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 4 cut(s) 176, 189, 248, 282
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 291, 364
Bsp1720I GCTNAGC 1 cut(s) 386
BspACI CCGC 7 cut(s) 41, 43, 61, 190, 193, 232, 391
BspANI GGCC 4 cut(s) 176, 189, 248, 282
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 3 cut(s) 43, 195, 393
BspLI GGNNCC 2 cut(s) 223, 293
BspPI GGATC 2 cut(s) 286, 299
BspT107I GGYRCC 1 cut(s) 221
BsrFI RCCGGY 2 cut(s) 11, 358
BsrI ACTGG 2 cut(s) 110, 212
BssAI RCCGGY 2 cut(s) 11, 358
BssECI CCNNGG 2 cut(s) 41, 155
BssMI GATC 2 cut(s) 291, 364
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 386, 423
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 3 cut(s) 43, 195, 393
BstH2I RGCGCY 2 cut(s) 24, 225
BstHHI GCGC 2 cut(s) 23, 224
BstKTI GATC 2 cut(s) 294, 367
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 291, 364
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 27, 279
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstUI CGCG 3 cut(s) 43, 195, 393
BstV1I GCAGC 4 cut(s) 30, 42, 320, 336
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 4 cut(s) 176, 189, 248, 282
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 2 cut(s) 23, 224
Cfr10I RCCGGY 2 cut(s) 11, 358
Cfr13I GGNCC 3 cut(s) 4, 175, 281
Cfr42I CCGCGG 1 cut(s) 44
Csp6I GTAC 2 cut(s) 403, 442
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 1 cut(s) 253
CviQI GTAC 2 cut(s) 403, 442
DdeI CTNAG 2 cut(s) 386, 423
DinI GGCGCC 1 cut(s) 223
DpnI GATC 2 cut(s) 293, 366
DpnII GATC 2 cut(s) 291, 364
EaeI YGGCCR 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 155
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 243
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 256
FaiI YATR 6 cut(s) 183, 241, 254, 316, 325, 436
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 7 cut(s) 19, 31, 190, 193, 334, 350, 391
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 7 cut(s) 19, 31, 190, 193, 334, 350, 391
FspBI CTAG 3 cut(s) 150, 203, 270
GlaI GCGC 2 cut(s) 22, 223
GluI GCNGC 7 cut(s) 19, 31, 190, 193, 334, 350, 391
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 2 cut(s) 24, 225
HaeIII GGCC 4 cut(s) 176, 189, 248, 282
HapII CCGG 2 cut(s) 12, 359
HhaI GCGC 2 cut(s) 23, 224
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 2 cut(s) 21, 222
HinP1I GCGC 2 cut(s) 21, 222
HinfI GANTC 1 cut(s) 307
HpaII CCGG 2 cut(s) 12, 359
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 98, 304
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 455
HpyCH4V TGCA 4 cut(s) 114, 129, 256, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 279
HpyF3I CTNAG 2 cut(s) 386, 423
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 2 cut(s) 21, 222
KasI GGCGCC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 364
KspI CCGCGG 1 cut(s) 44
Kzo9I GATC 2 cut(s) 291, 364
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 4 cut(s) 30, 42, 320, 336
MaeI CTAG 3 cut(s) 150, 203, 270
MalI GATC 2 cut(s) 293, 366
MboI GATC 2 cut(s) 291, 364
MboII GAAGA 1 cut(s) 115
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 87
Mly113I GGCGCC 1 cut(s) 222
MnlI CCTC 6 cut(s) 142, 188, 236, 305, 388, 423
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 2 cut(s) 12, 359
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 3 cut(s) 43, 195, 393
MwoI GCNNNNNNNGC 2 cut(s) 27, 279
NarI GGCGCC 1 cut(s) 222
NdeII GATC 2 cut(s) 291, 364
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 223, 293
PfeI GAWTC 1 cut(s) 307
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 7 cut(s) 20, 32, 191, 194, 335, 351, 392
PluTI GGCGCC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 223, 293
PspPI GGNCC 3 cut(s) 4, 175, 281
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 2 cut(s) 404, 443
RsaNI GTAC 2 cut(s) 403, 442
SacII CCGCGG 1 cut(s) 44
SatI GCNGC 7 cut(s) 19, 31, 190, 193, 334, 350, 391
Sau3AI GATC 2 cut(s) 291, 364
Sau96I GGNCC 3 cut(s) 4, 175, 281
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 72
SetI ASST 6 cut(s) 35, 56, 85, 134, 404, 447
SfoI GGCGCC 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 44
SgrBI CCGCGG 1 cut(s) 44
SinI GGWCC 1 cut(s) 4
SpeI ACTAGT 1 cut(s) 149
Sse9I AATT 1 cut(s) 87
SsiI CCGC 7 cut(s) 41, 43, 61, 190, 193, 232, 391
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 3 cut(s) 150, 203, 270
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 155
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 87
TauI GCSGC 3 cut(s) 192, 195, 393
TfiI GAWTC 1 cut(s) 307
TscAI CASTG 1 cut(s) 219
TseI GCWGC 4 cut(s) 18, 30, 333, 349
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 3 cut(s) 150, 203, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.