Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012746.1

Orthogroup ID

OG0019510

Physical Location & Seq

Genomic Coordinates Reverse (-)

87156 .. 87536

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012746.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggcccaaactggtcgcggcgttcacagcagctcctatccgcggtggctggcctattaccataaagaacacaatgcgactggtggtatttctgttctggagtattggctctgcaagttcatcttctgtatctctgccaataagcccactggtccttggactttcctggccacagtcctctacaacggccaccgcgtggggttaggacaaccagtgttgggtgccctctaccgtactctataccaggccaccatgcatcctttcgagactcacatttctggccctttttggatcattgatttctggattcaaacttactttccattcttccgccgcgacgatatttcattgctaccaccggctgatgccctttttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030029 GO:0030036 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051015 GO:0051017 GO:0051321 GO:0051704 GO:0061572 GO:0071840 GO:0097435 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2 PTEN_C2

Protein Analysis

126

Amino Acids

14.46

Weight (kDa)

8.62

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019510)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8029192.1_g000001 Rmu_sc0000745.1_g000011 Rmu_sc0002545.1_g000061 Rmu_sc0008676.1_g000009 Rmu_sc0009462.1_g000019 Rmu_sc0009799.1_g000002 Rmu_sc0012746.1_g000035 Rmu_sc0018928.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccII	CGCG	4 cut(s)	18, 43, 195, 336
AciI	CCGC	6 cut(s)	18, 41, 43, 193, 331, 334
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	2 cut(s)	168, 187
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	42, 196, 218
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	2 cut(s)	165, 243
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	6 cut(s)	3, 51, 168, 187, 246, 280
ApeKI	GCWGC	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	4, 152, 281
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	167, 245
BcoDI	GTCTC	1 cut(s)	260
BisI	GCNGC	3 cut(s)	19, 31, 334
BlsI	GCNGC	3 cut(s)	20, 32, 335
Bme1390I	CCNGG	2 cut(s)	167, 245
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	4, 152, 281
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	167, 245
BmsI	GCATC	2 cut(s)	265, 355
BpmI	CTGGAG	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	41, 155
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 196, 218
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	4 cut(s)	16, 85, 154, 212
Bse3DI	GCAATG	1 cut(s)	347
BseBI	CCWGG	2 cut(s)	167, 245
BseDI	CCNNGG	2 cut(s)	41, 155
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	3 cut(s)	42, 196, 218
BseMI	GCAATG	1 cut(s)	347
BseNI	ACTGG	4 cut(s)	16, 85, 154, 212
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	42
Bsh1236I	CGCG	4 cut(s)	18, 43, 195, 336
BshFI	GGCC	6 cut(s)	5, 53, 170, 189, 248, 282
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	3 cut(s)	42, 196, 218
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	6 cut(s)	5, 53, 170, 189, 248, 282
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	6 cut(s)	18, 41, 43, 193, 331, 334
BspANI	GGCC	6 cut(s)	5, 53, 170, 189, 248, 282
BspFNI	CGCG	4 cut(s)	18, 43, 195, 336
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	4 cut(s)	16, 85, 154, 212
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	41, 155
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	167, 245
Bst4CI	ACNGT	2 cut(s)	175, 233
BstC8I	GCNNGC	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	4 cut(s)	18, 43, 195, 336
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	2 cut(s)	167, 245
BstSCI	CCNGG	2 cut(s)	165, 243
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	4 cut(s)	18, 43, 195, 336
BstV1I	GCAGC	1 cut(s)	42
BsuRI	GGCC	6 cut(s)	5, 53, 170, 189, 248, 282
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	147, 219
Cac8I	GCNNGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	4, 152, 281
Cfr42I	CCGCGG	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	1 cut(s)	234
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
DraIII	CACNNNGTG	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	168, 187
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	165, 243
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	256
FaiI	YATR	3 cut(s)	63, 241, 254
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	19, 31, 334
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	19, 31, 334
GluI	GCNGC	3 cut(s)	19, 31, 334
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	6 cut(s)	5, 53, 170, 189, 248, 282
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	2 cut(s)	268, 307
HpaII	CCGG	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	98, 265, 304
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	175, 233
HpyCH4V	TGCA	2 cut(s)	114, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	2 cut(s)	265, 355
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	2 cut(s)	115, 319
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	2 cut(s)	188, 236
Mox20I	TGGCCA	1 cut(s)	170
Mph1103I	ATGCAT	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	379
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	167, 245
MvaI	CCWGG	2 cut(s)	167, 245
MvnI	CGCG	4 cut(s)	18, 43, 195, 336
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	20, 32, 335
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	165, 243
PspGI	CCWGG	2 cut(s)	165, 243
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	3 cut(s)	4, 152, 281
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SacII	CCGCGG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	379
SatI	GCNGC	3 cut(s)	19, 31, 334
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	3 cut(s)	4, 152, 281
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	167, 245
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	1 cut(s)	35
SfaNI	GCATC	2 cut(s)	265, 355
Sfr303I	CCGCGG	1 cut(s)	44
SgrBI	CCGCGG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	152
SsiI	CCGC	6 cut(s)	18, 41, 43, 193, 331, 334
StyD4I	CCNGG	2 cut(s)	165, 243
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	175, 233
TaqI	TCGA	1 cut(s)	264
TauI	GCSGC	2 cut(s)	21, 336
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TscAI	CASTG	2 cut(s)	154, 219
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	109, 336
TspRI	CASTG	2 cut(s)	154, 219
Van91I	CCANNNNNTGG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.