Rmu_sc0008676.1_g000009

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008676.1
OG0019510
Physical Location & Seq
Forward (+)
40081 .. 40506
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008676.1_g000009.1.cds

Sequence Viewer

Length: 426 bp
atggcccaaaccggtcgcagctccgacagcagctcttacccacagtggctgacccattaccgcaaacaacataacgcgaccgacgggattgctttcctagagtattggctctgtaagttcatcttttgcacctccgccaacaaacccactggtccttggactttcctggccacgaccctctacaacggccgccatgtagggctcggacaaccgatttttggtgctctctaccacactctataccaggaaaacatgcatccttttgaaactagcatttcaggccctttttggattcttgacttctatattcaaatttattttccatattttcgccgcgatgacattccactgtttccatcgcctgatgagcttcttggtcaatggcttatttgcgaagcaaggtacatatccccaccttactcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

141

Amino Acids

16.48

Weight (kDa)

6.16

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 77, 336
AciI CCGC 4 cut(s) 61, 135, 190, 334
AcoI YGGCCR 2 cut(s) 168, 187
AcsI RAATTY 1 cut(s) 312
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 218
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 2 cut(s) 266, 311
AjnI CCWGG 2 cut(s) 165, 243
AluBI AGCT 3 cut(s) 21, 33, 370
AluI AGCT 3 cut(s) 21, 33, 370
Alw21I GWGCWC 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 4 cut(s) 3, 168, 187, 280
ApeKI GCWGC 2 cut(s) 18, 30
ApoI RAATTY 1 cut(s) 312
AsiGI ACCGGT 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 4, 152, 281
AvaII GGWCC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 30, 42
BccI CCATC 1 cut(s) 364
BceAI ACGGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 167, 245
BfaI CTAG 3 cut(s) 98, 270, 424
BisI GCNGC 4 cut(s) 19, 31, 190, 334
BlsI GCNGC 4 cut(s) 20, 32, 191, 335
Bme1390I CCNGG 2 cut(s) 167, 245
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 4, 152, 281
BmrFI CCNGG 2 cut(s) 167, 245
BmsI GCATC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 154
BseBI CCWGG 2 cut(s) 167, 245
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 154
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 30, 42
Bsh1236I CGCG 2 cut(s) 77, 336
Bsh1285I CGRYCG 3 cut(s) 16, 81, 190
BshFI GGCC 4 cut(s) 5, 170, 189, 282
BshTI ACCGGT 1 cut(s) 11
BsiEI CGRYCG 3 cut(s) 16, 81, 190
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 218
BsnI GGCC 4 cut(s) 5, 170, 189, 282
Bsp1286I GDGCHC 2 cut(s) 204, 226
BspACI CCGC 4 cut(s) 61, 135, 190, 334
BspANI GGCC 4 cut(s) 5, 170, 189, 282
BspFNI CGCG 2 cut(s) 77, 336
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 167, 245
Bst4CI ACNGT 2 cut(s) 45, 351
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 2 cut(s) 77, 336
BstMCI CGRYCG 3 cut(s) 16, 81, 190
BstMWI GCNNNNNNNGC 3 cut(s) 27, 279, 367
BstNI CCWGG 2 cut(s) 167, 245
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 165, 243
BstUI CGCG 2 cut(s) 77, 336
BstV1I GCAGC 2 cut(s) 30, 42
BstZI CGGCCG 1 cut(s) 187
BsuRI GGCC 4 cut(s) 5, 170, 189, 282
BtgZI GCGATG 2 cut(s) 342, 351
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 3 cut(s) 50, 147, 347
CaiI CAGNNNCTG 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 4, 152, 281
Csp6I GTAC 1 cut(s) 403
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 2 cut(s) 194, 253
CviQI GTAC 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 168, 187
EagI CGGCCG 1 cut(s) 187
EciI GGCGGA 1 cut(s) 124
EclXI CGGCCG 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 152
Eco52I CGGCCG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 165, 243
EcoT14I CCWWGG 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 2 cut(s) 197, 256
FaiI YATR 7 cut(s) 72, 195, 241, 254, 306, 325, 407
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 2 cut(s) 193, 252
Fnu4HI GCNGC 4 cut(s) 19, 31, 190, 334
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 4 cut(s) 19, 31, 190, 334
FspBI CTAG 3 cut(s) 98, 270, 424
GluI GCNGC 4 cut(s) 19, 31, 190, 334
HaeIII GGCC 4 cut(s) 5, 170, 189, 282
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 197, 256
HinfI GANTC 1 cut(s) 292
HpaII CCGG 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 25, 206
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 45, 351
HpyCH4V TGCA 2 cut(s) 129, 256
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 279, 367
Hsp92II CATG 2 cut(s) 197, 256
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 8 cut(s) 25, 135, 152, 179, 230, 257, 264, 375
Lsp1109I GCAGC 2 cut(s) 30, 42
LweI GCATC 1 cut(s) 265
MaeI CTAG 3 cut(s) 98, 270, 424
MhlI GDGCHC 2 cut(s) 204, 226
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 1 cut(s) 312
MluNI TGGCCA 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 2 cut(s) 142, 188
Mox20I TGGCCA 1 cut(s) 170
Mph1103I ATGCAT 1 cut(s) 258
MscI TGGCCA 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 167, 245
MvaI CCWGG 2 cut(s) 167, 245
MvnI CGCG 2 cut(s) 77, 336
MwoI GCNNNNNNNGC 3 cut(s) 27, 279, 367
NlaIII CATG 2 cut(s) 197, 256
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 1 cut(s) 256
PfeI GAWTC 1 cut(s) 292
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 4 cut(s) 20, 32, 191, 335
Psp6I CCWGG 2 cut(s) 165, 243
PspGI CCWGG 2 cut(s) 165, 243
PspPI GGNCC 3 cut(s) 4, 152, 281
PstNI CAGNNNCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SatI GCNGC 4 cut(s) 19, 31, 190, 334
Sau96I GGNCC 3 cut(s) 4, 152, 281
ScrFI CCNGG 2 cut(s) 167, 245
SduI GDGCHC 2 cut(s) 204, 226
SetI ASST 6 cut(s) 23, 35, 134, 372, 404, 418
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 1 cut(s) 152
Sse9I AATT 1 cut(s) 312
SsiI CCGC 4 cut(s) 61, 135, 190, 334
SspMI CTAG 3 cut(s) 98, 270, 424
StyD4I CCNGG 2 cut(s) 165, 243
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 45, 351
TaqII GACCGA 1 cut(s) 95
TasI AATT 1 cut(s) 312
TauI GCSGC 2 cut(s) 192, 336
TfiI GAWTC 1 cut(s) 292
TscAI CASTG 3 cut(s) 50, 154, 354
TseI GCWGC 2 cut(s) 18, 30
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 3 cut(s) 50, 154, 354
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 312
XceI RCATGY 1 cut(s) 256
XspI CTAG 3 cut(s) 98, 270, 424
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.