Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009462.1

Orthogroup ID

OG0019510

Physical Location & Seq

Genomic Coordinates Reverse (-)

67363 .. 68346

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009462.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggctcccccaaagaagatgatcatcaatcaggaagaggaacttaacgagaaagtcacccatacttggggaaccagcgattgggtccttcactgtgagactctatcccggatggcgcgctcgccctctatggcctgcccatccgacgacccattccgtagagaacacaacgcgaccggaggaattgttttcctggagtactggctatgcaagttcatcttctgcacctccgccaacaagcccactagcccttggacttctctcaccacggctctctacaaaggccacaacgtagggctcagacaaccggtgctgggcgccctctactgtactctataccaggccaccatgcaacctttcgaaactagcatctcaggccacttttggatcctcgatttctggattcaaatttacttcccatttttcctccgcgacaacattccgccgctaccaccagctaacactcttcttggccgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030029 GO:0030036 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051015 GO:0051017 GO:0051321 GO:0051704 GO:0061572 GO:0071840 GO:0097435 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2 PTEN_C2

Protein Analysis

159

Amino Acids

18.26

Weight (kDa)

6.94

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019510)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8029192.1_g000001 Rmu_sc0000745.1_g000011 Rmu_sc0002545.1_g000061 Rmu_sc0008676.1_g000009 Rmu_sc0009462.1_g000019 Rmu_sc0009799.1_g000002 Rmu_sc0012746.1_g000035 Rmu_sc0018928.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	81
AccII	CGCG	3 cut(s)	118, 173, 432
AciI	CCGC	4 cut(s)	231, 430, 443, 446
AclWI	GGATC	2 cut(s)	382, 395
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	2 cut(s)	200, 331
AfiI	CCNNNNNNNGG	4 cut(s)	66, 67, 81, 314
AgeI	ACCGGT	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	192, 339
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	382, 395
AoxI	GGCC	5 cut(s)	132, 283, 342, 376, 472
ApoI	RAATTY	1 cut(s)	408
AsiGI	ACCGGT	1 cut(s)	307
AspLEI	GCGC	3 cut(s)	118, 120, 320
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	49, 256
AsuII	TTCGAA	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	300
BccI	CCATC	2 cut(s)	106, 148
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	194, 341
BclI	TGATCA	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	246, 366
BfoI	RGCGCY	1 cut(s)	321
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	3 cut(s)	109, 194, 341
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	5 cut(s)	6, 73, 86, 319, 389
BmrFI	CCNGG	3 cut(s)	109, 194, 341
BmsI	GCATC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	251, 267
BsaWI	WCCGGW	2 cut(s)	176, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 67, 81, 314
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	2 cut(s)	194, 341
BseDI	CCNNGG	2 cut(s)	251, 267
BseGI	GGATG	2 cut(s)	117, 140
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	4 cut(s)	66, 67, 81, 314
BseMII	CTCAG	2 cut(s)	313, 387
BseNI	ACTGG	1 cut(s)	206
BsePI	GCGCGC	1 cut(s)	116
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	3 cut(s)	118, 173, 432
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	5 cut(s)	134, 285, 344, 378, 474
BshNI	GGYRCC	1 cut(s)	317
BshTI	ACCGGT	1 cut(s)	307
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	109, 177, 308
BslI	CCNNNNNNNGG	4 cut(s)	66, 67, 81, 314
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	5 cut(s)	134, 285, 344, 378, 474
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	21, 387
BspACI	CCGC	4 cut(s)	231, 430, 443, 446
BspANI	GGCC	5 cut(s)	134, 285, 344, 378, 474
BspCNI	CTCAG	2 cut(s)	312, 386
BspFNI	CGCG	3 cut(s)	118, 173, 432
BspLI	GGNNCC	5 cut(s)	6, 73, 86, 319, 389
BspPI	GGATC	2 cut(s)	382, 395
BspT104I	TTCGAA	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	251, 267
BssHII	GCGCGC	1 cut(s)	116
BssMI	GATC	2 cut(s)	21, 387
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	194, 341
Bst4CI	ACNGT	2 cut(s)	95, 329
Bst6I	CTCTTC	2 cut(s)	30, 471
BstACI	GRCGYC	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	118, 122, 136
BstDEI	CTNAG	2 cut(s)	299, 373
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	117, 140
BstFNI	CGCG	3 cut(s)	118, 173, 432
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	3 cut(s)	118, 120, 320
BstKTI	GATC	2 cut(s)	24, 390
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	21, 387
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	2 cut(s)	194, 341
BstSCI	CCNGG	3 cut(s)	107, 192, 339
BstUI	CGCG	3 cut(s)	118, 173, 432
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	5 cut(s)	134, 285, 344, 378, 474
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	117, 140
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	3 cut(s)	118, 122, 136
CfoI	GCGC	3 cut(s)	118, 120, 320
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	199, 330
CspAI	ACCGGT	1 cut(s)	307
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	2 cut(s)	199, 330
DdeI	CTNAG	2 cut(s)	299, 373
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	2 cut(s)	23, 389
DpnII	GATC	2 cut(s)	21, 387
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	30, 471
EarI	CTCTTC	2 cut(s)	30, 471
EciI	GGCGGA	2 cut(s)	220, 432
Eco130I	CCWWGG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	192, 339
EcoT14I	CCWWGG	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	300
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	1 cut(s)	352
FaiI	YATR	5 cut(s)	63, 131, 208, 337, 350
FalI	AAGNNNNNCTT	4 cut(s)	27, 59, 203, 235
FatI	CATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	2 cut(s)	124, 127
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	2 cut(s)	246, 366
GlaI	GCGC	3 cut(s)	117, 119, 319
GluI	GCNGC	1 cut(s)	446
GsaI	CCCAGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	5 cut(s)	134, 285, 344, 378, 474
HapII	CCGG	3 cut(s)	109, 177, 308
HhaI	GCGC	3 cut(s)	118, 120, 320
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	3 cut(s)	116, 118, 318
HinP1I	GCGC	3 cut(s)	116, 118, 318
HinfI	GANTC	2 cut(s)	100, 403
HpaII	CCGG	3 cut(s)	109, 177, 308
HphI	GGTGA	2 cut(s)	49, 256
Hpy188I	TCNGA	2 cut(s)	145, 302
Hpy188III	TCNNGA	2 cut(s)	32, 400
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	95, 329
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	3 cut(s)	210, 225, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	2 cut(s)	299, 373
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	3 cut(s)	116, 118, 318
KasI	GGCGCC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	21, 387
LmnI	GCTCC	1 cut(s)	10
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	2 cut(s)	246, 366
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	23, 389
MboI	GATC	2 cut(s)	21, 387
MboII	GAAGA	4 cut(s)	28, 47, 211, 458
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	2 cut(s)	183, 408
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	31, 136, 173, 238, 332, 401, 437
MseI	TTAA	1 cut(s)	45
MspI	CCGG	3 cut(s)	109, 177, 308
MspR9I	CCNGG	3 cut(s)	109, 194, 341
MvaI	CCWGG	2 cut(s)	194, 341
MvnI	CGCG	3 cut(s)	118, 173, 432
MwoI	GCNNNNNNNGC	1 cut(s)	375
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	21, 387
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	5 cut(s)	6, 73, 86, 319, 389
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	360
PauI	GCGCGC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	81
PfoI	TCCNGGA	2 cut(s)	107, 192
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	447
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	192, 339
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	2 cut(s)	192, 339
PspN4I	GGNNCC	5 cut(s)	6, 73, 86, 319, 389
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	387
PteI	GCGCGC	1 cut(s)	116
RsaI	GTAC	2 cut(s)	200, 331
RsaNI	GTAC	2 cut(s)	199, 330
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	2 cut(s)	21, 387
Sau96I	GGNCC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	109, 194, 341
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	4 cut(s)	230, 294, 358, 460
SfaNI	GCATC	1 cut(s)	378
SfoI	GGCGCC	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	360
SinI	GGWCC	1 cut(s)	85
Sse9I	AATT	2 cut(s)	183, 408
SsiI	CCGC	4 cut(s)	231, 430, 443, 446
SspDI	GGCGCC	1 cut(s)	317
SspMI	CTAG	2 cut(s)	246, 366
StyD4I	CCNGG	3 cut(s)	107, 192, 339
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	95, 329
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	360, 393
TasI	AATT	2 cut(s)	183, 408
TatI	WGTACW	2 cut(s)	198, 329
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	2 cut(s)	246, 366
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.