Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018928.1

Orthogroup ID

OG0019510

Physical Location & Seq

Genomic Coordinates Forward (+)

4749 .. 5589

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018928.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgccagactgggcccttcaccacgagattccatcccagactactcactcgccctctacggtctgcccatctgacaacccattccggtcctcagaagaacaactggagatttcactagctggggtgcgcatcagcacagagccaaatagggcattggcccgccaccatcaacgccgcagagctctaatggtatcgcgaagcacgagcgcgagatcttgctcgctgggacgcggctgcagttctcatagcggctcctacccgcggtggctgtcccattaccgcggagaacacaacgcgaccgaaggaattgccttcctggagtactggctgtgcaagttcatctcctgcacctccactaacaagcccactggaccttggacttctctcgcgacggccctctacaacggccatcgcgtagggctcggacaaccagttttgggcgccctctaccgcactttataccaggccaccatgcatcctttcgaaactaacatctcaggccccttctggattcttgatttctggattcaaatttactttccattcttcagccgtgacgacattctgccgctacctccaactgacactcttcttggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

199

Amino Acids

22.45

Weight (kDa)

8.34

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019510)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8029192.1_g000001 Rmu_sc0000745.1_g000011 Rmu_sc0002545.1_g000061 Rmu_sc0008676.1_g000009 Rmu_sc0009462.1_g000019 Rmu_sc0009799.1_g000002 Rmu_sc0012746.1_g000035 Rmu_sc0018928.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	440
AccII	CGCG	8 cut(s)	196, 209, 231, 262, 282, 296, 389, 414
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	532
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	261, 437
AgsI	TTSAA	1 cut(s)	530
AjnI	CCWGG	2 cut(s)	315, 462
AluBI	AGCT	2 cut(s)	119, 182
AluI	AGCT	2 cut(s)	119, 182
Alw21I	GWGCWC	1 cut(s)	184
AoxI	GGCC	6 cut(s)	12, 156, 393, 406, 465, 499
ApaI	GGGCCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	531
AspLEI	GCGC	3 cut(s)	129, 209, 443
AspS9I	GGNCC	7 cut(s)	12, 13, 87, 157, 371, 394, 500
AsuHPI	GGTGA	1 cut(s)	11
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	87, 371
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	3 cut(s)	16, 184, 423
BauI	CACGAG	2 cut(s)	23, 202
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	4 cut(s)	40, 76, 174, 417
BceAI	ACGGC	3 cut(s)	408, 421, 537
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	2 cut(s)	317, 464
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	235
BfoI	RGCGCY	1 cut(s)	444
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	5 cut(s)	175, 232, 235, 250, 569
BlsI	GCNGC	5 cut(s)	176, 233, 236, 251, 570
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	317, 464
Bme18I	GGWCC	2 cut(s)	87, 371
BmgT120I	GGNCC	7 cut(s)	12, 13, 87, 157, 371, 394, 500
BmiI	GGNNCC	4 cut(s)	14, 253, 442, 502
BmrFI	CCNGG	2 cut(s)	317, 464
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	138, 484
BmuI	ACTGGG	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	125, 338
Bpu14I	TTCGAA	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	260, 280, 374
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 437
Bse1I	ACTGG	5 cut(s)	14, 108, 329, 373, 431
BseBI	CCWGG	2 cut(s)	317, 464
BseDI	CCNNGG	3 cut(s)	260, 280, 374
BseGI	GGATG	2 cut(s)	32, 475
BseLI	CCNNNNNNNGG	2 cut(s)	261, 437
BseMII	CTCAG	2 cut(s)	105, 510
BseNI	ACTGG	5 cut(s)	14, 108, 329, 373, 431
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	221
BseYI	CCCAGC	2 cut(s)	119, 223
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	8 cut(s)	196, 209, 231, 262, 282, 296, 389, 414
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	6 cut(s)	14, 158, 395, 408, 467, 501
BshNI	GGYRCC	1 cut(s)	440
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	240, 256
BslI	CCNNNNNNNGG	2 cut(s)	261, 437
BsmFI	GGGAC	2 cut(s)	240, 256
BsnI	GGCC	6 cut(s)	14, 158, 395, 408, 467, 501
Bsp119I	TTCGAA	1 cut(s)	483
Bsp120I	GGGCCC	1 cut(s)	12
Bsp1286I	GDGCHC	3 cut(s)	16, 184, 423
Bsp143I	GATC	1 cut(s)	212
Bsp68I	TCGCGA	2 cut(s)	196, 389
BspANI	GGCC	6 cut(s)	14, 158, 395, 408, 467, 501
BspCNI	CTCAG	2 cut(s)	104, 509
BspFNI	CGCG	8 cut(s)	196, 209, 231, 262, 282, 296, 389, 414
BspLI	GGNNCC	4 cut(s)	14, 253, 442, 502
BspMAI	CTGCAG	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	440
BsrI	ACTGG	5 cut(s)	14, 108, 329, 373, 431
BssECI	CCNNGG	3 cut(s)	260, 280, 374
BssMI	GATC	1 cut(s)	212
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	2 cut(s)	23, 202
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	2 cut(s)	23, 202
Bst2UI	CCWGG	2 cut(s)	317, 464
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	594
BstACI	GRCGYC	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	160, 221
BstDEI	CTNAG	2 cut(s)	91, 496
BstDSI	CCRYGG	2 cut(s)	260, 280
BstF5I	GGATG	2 cut(s)	32, 475
BstFNI	CGCG	8 cut(s)	196, 209, 231, 262, 282, 296, 389, 414
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	3 cut(s)	129, 209, 443
BstKTI	GATC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	212
BstMCI	CGRYCG	1 cut(s)	300
BstNI	CCWGG	2 cut(s)	317, 464
BstSCI	CCNGG	2 cut(s)	315, 462
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	8 cut(s)	196, 209, 231, 262, 282, 296, 389, 414
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	6 cut(s)	14, 158, 395, 408, 467, 501
BtgI	CCRYGG	2 cut(s)	260, 280
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	32, 475
BtsIMutI	CAGTG	1 cut(s)	366
BtuMI	TCGCGA	2 cut(s)	196, 389
Cac8I	GCNNGC	2 cut(s)	160, 221
CfoI	GCGC	3 cut(s)	129, 209, 443
Cfr13I	GGNCC	7 cut(s)	12, 13, 87, 157, 371, 394, 500
Cfr42I	CCGCGG	2 cut(s)	263, 283
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	472
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	91, 496
DinI	GGCGCC	1 cut(s)	442
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	374
Eco24I	GRGCYC	3 cut(s)	16, 184, 423
Eco47I	GGWCC	2 cut(s)	87, 371
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	532
EcoICRI	GAGCTC	1 cut(s)	182
EcoO109I	RGGNCCY	2 cut(s)	13, 500
EcoRII	CCWGG	2 cut(s)	315, 462
EcoT14I	CCWWGG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	3 cut(s)	16, 184, 423
EgeI	GGCGCC	1 cut(s)	442
EheI	GGCGCC	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	1 cut(s)	475
FaiI	YATR	3 cut(s)	246, 460, 473
FaqI	GGGAC	2 cut(s)	240, 256
FatI	CATG	1 cut(s)	471
FauI	CCCGC	2 cut(s)	167, 267
Fnu4HI	GCNGC	5 cut(s)	175, 232, 235, 250, 569
FokI	GGATG	2 cut(s)	19, 462
FriOI	GRGCYC	3 cut(s)	16, 184, 423
Fsp4HI	GCNGC	5 cut(s)	175, 232, 235, 250, 569
FspAI	RTGCGCAY	1 cut(s)	128
FspBI	CTAG	1 cut(s)	116
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	3 cut(s)	128, 208, 442
GluI	GCNGC	5 cut(s)	175, 232, 235, 250, 569
GsaI	CCCAGC	2 cut(s)	123, 227
GsuI	CTGGAG	2 cut(s)	125, 338
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	6 cut(s)	14, 158, 395, 408, 467, 501
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	3 cut(s)	129, 209, 443
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	475
Hin6I	GCGC	3 cut(s)	127, 207, 441
HinP1I	GCGC	3 cut(s)	127, 207, 441
HinfI	GANTC	3 cut(s)	28, 511, 526
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	11
Hpy188I	TCNGA	3 cut(s)	73, 94, 425
Hpy188III	TCNNGA	5 cut(s)	195, 388, 508, 515, 523
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	4 cut(s)	26, 296, 322, 514
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	4 cut(s)	237, 333, 348, 475
HpyF3I	CTNAG	2 cut(s)	91, 496
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	475
HspAI	GCGC	3 cut(s)	127, 207, 441
KasI	GGCGCC	1 cut(s)	440
KspI	CCGCGG	2 cut(s)	263, 283
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	2 cut(s)	138, 484
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	107, 538, 581
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	3 cut(s)	16, 184, 423
MluCI	AATT	2 cut(s)	306, 531
Mly113I	GGCGCC	1 cut(s)	441
MnlI	CCTC	6 cut(s)	64, 100, 361, 407, 455, 585
Mph1103I	ATGCAT	1 cut(s)	477
MspA1I	CMGCKG	2 cut(s)	262, 282
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	317, 464
MvaI	CCWGG	2 cut(s)	317, 464
MvnI	CGCG	8 cut(s)	196, 209, 231, 262, 282, 296, 389, 414
NarI	GGCGCC	1 cut(s)	441
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	4 cut(s)	14, 253, 442, 502
NmuCI	GTSAC	1 cut(s)	554
NruI	TCGCGA	2 cut(s)	196, 389
NsbI	TGCGCA	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	477
NspV	TTCGAA	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	2 cut(s)	200, 411
PfeI	GAWTC	3 cut(s)	28, 511, 526
PfoI	TCCNGGA	1 cut(s)	315
PkrI	GCNGC	5 cut(s)	176, 233, 236, 251, 570
PluTI	GGCGCC	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	315, 462
PspFI	CCCAGC	2 cut(s)	119, 223
PspGI	CCWGG	2 cut(s)	315, 462
PspN4I	GGNNCC	4 cut(s)	14, 253, 442, 502
PspOMI	GGGCCC	1 cut(s)	12
PspPI	GGNCC	7 cut(s)	12, 13, 87, 157, 371, 394, 500
PstI	CTGCAG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	212
RruI	TCGCGA	2 cut(s)	196, 389
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	184
SacII	CCGCGG	2 cut(s)	263, 283
SatI	GCNGC	5 cut(s)	175, 232, 235, 250, 569
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	7 cut(s)	12, 13, 87, 157, 371, 394, 500
ScaI	AGTACT	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	317, 464
SduI	GDGCHC	3 cut(s)	16, 184, 423
SetI	ASST	5 cut(s)	121, 184, 353, 376, 577
SfaNI	GCATC	2 cut(s)	138, 484
SfcI	CTRYAG	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	442
Sfr303I	CCGCGG	2 cut(s)	263, 283
SfuI	TTCGAA	1 cut(s)	483
SgrBI	CCGCGG	2 cut(s)	263, 283
SinI	GGWCC	2 cut(s)	87, 371
Sse9I	AATT	2 cut(s)	306, 531
SspDI	GGCGCC	1 cut(s)	440
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	315, 462
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	483
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	2 cut(s)	306, 531
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	4 cut(s)	177, 234, 252, 571
TfiI	GAWTC	3 cut(s)	28, 511, 526
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	87, 371
XapI	RAATTY	1 cut(s)	531
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.