Rmu_sc0002545.1_g000061

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002545.1
OG0019510
Physical Location & Seq
Forward (+)
278981 .. 280224
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002545.1_g000061.1.cds

Sequence Viewer

Length: 834 bp
atgggatgccaccccggacactcaaggcccggggcaaggccagcacagcccatctatatacacaacaagagggcttatatgacatcagaagaacttgtgtcccacatcgaggataggggagactcctttcctatgatcgaatataaagacattagcacaaccacctttcagggacggtatagcattctgtgtgaggtacccggagaaagccaccagaaacagcaggtatcacacataccatcgacctatgttttcgtcttccacgcggcagcaatcattcgcctctcactgcctttctttgtttctggaataccgccacaagcactttcgattttagatttggtcaaatgggtatcaccttgctggatattctcaccatcaccggcttacccatcgatggctagccttatttacatggtcaatttgattctatcaccttcacctcgaccatggcccaacatggtcgcagcgggcacagtggctcctatccacaatgcccactggtacttggactcttctggcgacagccctctaaacggccgcaatgtcgggctcggtcaatcggtgctaggagccctttatcgtactttgtatcaggccactatggatccctttgtgactagcatatctggccccttctggatcttggacttctggatccagacttattttccattcttccgccgcgatgatatctcgcttcatccaccggccaaccaactcttggatcaatggttcagccgcgaggaaagcgcgatctccggcttagatatcaagatcgctgctgaagaacttagttacgagctttacgctcctaaccacttcgctcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

277

Amino Acids

31.16

Weight (kDa)

6.1

Isoelectric Point (pI)

65.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
Acc65I GGTACC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 196
AccB7I CCANNNNNTGG 1 cut(s) 724
AccII CGCG 4 cut(s) 266, 687, 744, 755
AciI CCGC 7 cut(s) 266, 314, 470, 541, 682, 685, 742
AclWI GGATC 6 cut(s) 602, 615, 650, 652, 665, 735
AcoI YGGCCR 2 cut(s) 538, 711
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 3 cut(s) 198, 506, 586
AfiI CCNNNNNNNGG 5 cut(s) 36, 109, 397, 536, 724
AloI GAACNNNNNNTCC 2 cut(s) 719, 751
AluBI AGCT 1 cut(s) 805
AluI AGCT 1 cut(s) 805
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 6 cut(s) 602, 615, 650, 652, 665, 735
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 7 cut(s) 26, 38, 452, 538, 597, 631, 711
ApeKI GCWGC 3 cut(s) 269, 467, 782
Asp718I GGTACC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 3 cut(s) 27, 453, 632
AsuC2I CCSGG 4 cut(s) 15, 30, 31, 201
AsuHPI GGTGA 5 cut(s) 348, 366, 372, 426, 432
AsuNHI GCTAGC 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 476
BamHI GGATCC 2 cut(s) 607, 657
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 2 cut(s) 555, 577
BbsI GAAGAC 1 cut(s) 250
BbvI GCAGC 3 cut(s) 281, 479, 769
BccI CCATC 5 cut(s) 59, 247, 385, 391, 400
BceAI ACGGC 1 cut(s) 553
BcnI CCSGG 4 cut(s) 15, 30, 31, 201
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 3 cut(s) 402, 569, 621
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 7 cut(s) 267, 270, 468, 541, 685, 742, 783
BlsI GCNGC 7 cut(s) 268, 271, 469, 542, 686, 743, 784
Bme1390I CCNGG 4 cut(s) 15, 30, 31, 201
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 3 cut(s) 27, 453, 632
BmiI GGNNCC 6 cut(s) 198, 483, 574, 609, 634, 659
BmrFI CCNGG 4 cut(s) 15, 30, 31, 201
BmtI GCTAGC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 7
BpuMI CCSGG 4 cut(s) 15, 30, 31, 201
Bsa29I ATCGAT 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 13, 29, 30, 449
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 109, 397, 536, 724
Bse118I RCCGGY 2 cut(s) 382, 709
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 550
BseCI ATCGAT 1 cut(s) 395
BseDI CCNNGG 4 cut(s) 13, 29, 30, 449
BseGI GGATG 2 cut(s) 11, 703
BseLI CCNNNNNNNGG 5 cut(s) 36, 109, 397, 536, 724
BseMI GCAATG 1 cut(s) 550
BseNI ACTGG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 476
BseX3I CGGCCG 1 cut(s) 538
BseXI GCAGC 3 cut(s) 281, 479, 769
Bsh1236I CGCG 4 cut(s) 266, 687, 744, 755
Bsh1285I CGRYCG 1 cut(s) 541
BshFI GGCC 7 cut(s) 28, 40, 454, 540, 599, 633, 713
BshNI GGYRCC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 541
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 6 cut(s) 15, 30, 201, 383, 710, 762
BslFI GGGAC 2 cut(s) 85, 186
BslI CCNNNNNNNGG 5 cut(s) 36, 109, 397, 536, 724
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 85, 186
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 7 cut(s) 28, 40, 454, 540, 599, 633, 713
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 476, 555, 577
Bsp143I GATC 7 cut(s) 135, 607, 642, 657, 727, 756, 777
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 7 cut(s) 266, 314, 470, 541, 682, 685, 742
BspANI GGCC 7 cut(s) 28, 40, 454, 540, 599, 633, 713
BspDI ATCGAT 1 cut(s) 395
BspFNI CGCG 4 cut(s) 266, 687, 744, 755
BspLI GGNNCC 6 cut(s) 198, 483, 574, 609, 634, 659
BspMI ACCTGC 1 cut(s) 214
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 6 cut(s) 602, 615, 650, 652, 665, 735
BspT107I GGYRCC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 550
BsrFI RCCGGY 2 cut(s) 382, 709
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 2 cut(s) 382, 709
BssECI CCNNGG 4 cut(s) 13, 29, 30, 449
BssMI GATC 7 cut(s) 135, 607, 642, 657, 727, 756, 777
BssT1I CCWWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 177, 478
Bst6I CTCTTC 1 cut(s) 520
BstC8I GCNNGC 4 cut(s) 42, 403, 472, 829
BstDEI CTNAG 2 cut(s) 766, 794
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 2 cut(s) 11, 703
BstFNI CGCG 4 cut(s) 266, 687, 744, 755
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 7 cut(s) 138, 610, 645, 660, 730, 759, 780
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 7 cut(s) 135, 607, 642, 657, 727, 756, 777
BstMCI CGRYCG 1 cut(s) 541
BstMWI GCNNNNNNNGC 4 cut(s) 41, 46, 630, 750
BstSCI CCNGG 4 cut(s) 13, 28, 29, 199
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 4 cut(s) 266, 687, 744, 755
BstV1I GCAGC 3 cut(s) 281, 479, 769
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 3 cut(s) 607, 642, 657
BstYI RGATCY 3 cut(s) 607, 642, 657
BstZI CGGCCG 1 cut(s) 538
Bsu15I ATCGAT 1 cut(s) 395
BsuRI GGCC 7 cut(s) 28, 40, 454, 540, 599, 633, 713
BsuTUI ATCGAT 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 702
BtsCI GGATG 2 cut(s) 11, 703
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 3 cut(s) 287, 483, 499
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 4 cut(s) 42, 403, 472, 829
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 2 cut(s) 382, 709
Cfr13I GGNCC 3 cut(s) 27, 453, 632
Cfr9I CCCGGG 1 cut(s) 29
ClaI ATCGAT 1 cut(s) 395
Csp6I GTAC 3 cut(s) 197, 505, 585
CviAII CATG 3 cut(s) 415, 450, 460
CviQI GTAC 3 cut(s) 197, 505, 585
DdeI CTNAG 2 cut(s) 766, 794
DpnI GATC 7 cut(s) 137, 609, 644, 659, 729, 758, 779
DpnII GATC 7 cut(s) 135, 607, 642, 657, 727, 756, 777
EaeI YGGCCR 2 cut(s) 538, 711
EagI CGGCCG 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 520
EciI GGCGGA 1 cut(s) 671
EclXI CGGCCG 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 449
Eco24I GRGCYC 2 cut(s) 555, 577
Eco32I GATATC 2 cut(s) 694, 772
Eco52I CGGCCG 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 29
EcoRV GATATC 2 cut(s) 694, 772
EcoT14I CCWWGG 1 cut(s) 449
EcoT38I GRGCYC 2 cut(s) 555, 577
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 3 cut(s) 418, 453, 463
FaqI GGGAC 2 cut(s) 85, 186
FatI CATG 3 cut(s) 414, 449, 459
FauI CCCGC 1 cut(s) 463
Fnu4HI GCNGC 7 cut(s) 267, 270, 468, 541, 685, 742, 783
FokI GGATG 2 cut(s) 18, 690
FriOI GRGCYC 2 cut(s) 555, 577
Fsp4HI GCNGC 7 cut(s) 267, 270, 468, 541, 685, 742, 783
FspBI CTAG 3 cut(s) 402, 569, 621
GlaI GCGC 1 cut(s) 754
GluI GCNGC 7 cut(s) 267, 270, 468, 541, 685, 742, 783
HaeIII GGCC 7 cut(s) 28, 40, 454, 540, 599, 633, 713
HapII CCGG 6 cut(s) 15, 30, 201, 383, 710, 762
HhaI GCGC 1 cut(s) 755
Hin1II CATG 3 cut(s) 418, 453, 463
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HinfI GANTC 3 cut(s) 122, 427, 512
HpaII CCGG 6 cut(s) 15, 30, 201, 383, 710, 762
HphI GGTGA 5 cut(s) 348, 366, 372, 426, 432
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 5 cut(s) 306, 640, 655, 661, 775
HpyAV CCTTC 2 cut(s) 447, 646
HpyCH4III ACNGT 2 cut(s) 177, 478
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 46, 630, 750
HpyF3I CTNAG 2 cut(s) 766, 794
Hsp92II CATG 3 cut(s) 418, 453, 463
HspAI GCGC 1 cut(s) 753
KpnI GGTACC 1 cut(s) 200
Kzo9I GATC 7 cut(s) 135, 607, 642, 657, 727, 756, 777
LmnI GCTCC 3 cut(s) 487, 572, 817
Lsp1109I GCAGC 3 cut(s) 281, 479, 769
MaeI CTAG 3 cut(s) 402, 569, 621
MaeIII GTNAC 2 cut(s) 616, 797
MalI GATC 7 cut(s) 137, 609, 644, 659, 729, 758, 779
MboI GATC 7 cut(s) 135, 607, 642, 657, 727, 756, 777
MboII GAAGA 5 cut(s) 101, 250, 507, 670, 800
MflI RGATCY 3 cut(s) 607, 642, 657
MhlI GDGCHC 3 cut(s) 476, 555, 577
MluCI AATT 1 cut(s) 421
MlyI GAGTC 2 cut(s) 116, 506
MnlI CCTC 7 cut(s) 63, 103, 187, 293, 453, 540, 739
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 6 cut(s) 15, 30, 201, 383, 710, 762
MspR9I CCNGG 4 cut(s) 15, 30, 31, 201
Mva1269I GAATGC 1 cut(s) 183
MvnI CGCG 4 cut(s) 266, 687, 744, 755
MwoI GCNNNNNNNGC 4 cut(s) 41, 46, 630, 750
NciI CCSGG 4 cut(s) 15, 30, 31, 201
NcoI CCATGG 1 cut(s) 449
NdeII GATC 7 cut(s) 135, 607, 642, 657, 727, 756, 777
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 3 cut(s) 418, 453, 463
NlaIV GGNNCC 6 cut(s) 198, 483, 574, 609, 634, 659
NmuCI GTSAC 1 cut(s) 616
PctI GAATGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 724
PkrI GCNGC 7 cut(s) 268, 271, 469, 542, 686, 743, 784
PleI GAGTC 2 cut(s) 116, 506
PpsI GAGTC 2 cut(s) 116, 506
PspN4I GGNNCC 6 cut(s) 198, 483, 574, 609, 634, 659
PspPI GGNCC 3 cut(s) 27, 453, 632
PsuI RGATCY 3 cut(s) 607, 642, 657
RsaI GTAC 3 cut(s) 198, 506, 586
RsaNI GTAC 3 cut(s) 197, 505, 585
SatI GCNGC 7 cut(s) 267, 270, 468, 541, 685, 742, 783
Sau3AI GATC 7 cut(s) 135, 607, 642, 657, 727, 756, 777
Sau96I GGNCC 3 cut(s) 27, 453, 632
SchI GAGTC 2 cut(s) 116, 506
ScrFI CCNGG 4 cut(s) 15, 30, 31, 201
SduI GDGCHC 3 cut(s) 476, 555, 577
SetI ASST 8 cut(s) 167, 198, 228, 248, 361, 439, 445, 807
SmaI CCCGGG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 1 cut(s) 421
SsiI CCGC 7 cut(s) 266, 314, 470, 541, 682, 685, 742
SspMI CTAG 3 cut(s) 402, 569, 621
StyD4I CCNGG 4 cut(s) 13, 28, 29, 199
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 2 cut(s) 177, 478
TaqI TCGA 6 cut(s) 108, 138, 242, 329, 395, 445
TaqII GACCGA 1 cut(s) 545
TasI AATT 1 cut(s) 421
TauI GCSGC 4 cut(s) 269, 543, 687, 744
TfiI GAWTC 1 cut(s) 427
TscAI CASTG 3 cut(s) 294, 483, 506
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 3 cut(s) 269, 467, 782
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 1 cut(s) 692
TspMI CCCGGG 1 cut(s) 29
TspRI CASTG 3 cut(s) 294, 483, 506
Van91I CCANNNNNTGG 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmaI CCCGGG 1 cut(s) 29
XspI CTAG 3 cut(s) 402, 569, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.