Rmu_co8033230.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8033230.1
OG0018007
Physical Location & Seq
Reverse (-)
1 .. 318
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8033230.1_g000001.1.cds

Sequence Viewer

Length: 308 bp
atggagggatctctcactcaattcacttgtgtttatgctgctacttcggcagctaagcgtaaagcattgtggttagagcttttgcatctccgacaacgtactacagtgccatggatggcaattggggactttaatgcagttctcggtgctcatgaaactaagggtggggctattccagctcgatcttcgtgtgaggattttcgtagcactactgagctttgtaattttactcatctagctacttctggtgcttttttcacttggtctagaggccgaggacggcggcgattggaaaggcgtcttgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

102

Amino Acids

11.46

Weight (kDa)

10.05

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 283
AclWI GGATC 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 1 cut(s) 100
AluBI AGCT 5 cut(s) 53, 79, 179, 217, 239
AluI AGCT 5 cut(s) 53, 79, 179, 217, 239
Alw21I GWGCWC 1 cut(s) 151
AlwI GGATC 1 cut(s) 16
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 38, 50
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 25, 62
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 296
BfaI CTAG 2 cut(s) 236, 267
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 3 cut(s) 39, 51, 284
BlpI GCTNAGC 1 cut(s) 54
BlsI GCNGC 3 cut(s) 40, 52, 285
BmsI GCATC 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 110, 274
BseDI CCNNGG 2 cut(s) 110, 274
BseGI GGATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 25, 62
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 8, 182
Bsp1720I GCTNAGC 1 cut(s) 54
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 1 cut(s) 283
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 151
BspPI GGATC 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 110, 274
BssMI GATC 2 cut(s) 8, 182
BssNI GRCGYC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 54, 159, 213
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 2 cut(s) 11, 185
BstMBI GATC 2 cut(s) 8, 182
BstMWI GCNNNNNNNGC 2 cut(s) 47, 176
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 25, 62
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 111
CciI TCATGA 1 cut(s) 151
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 99
CviAII CATG 2 cut(s) 111, 152
CviJI RGCY 7 cut(s) 53, 79, 170, 179, 217, 239, 273
CviKI_1 RGCY 7 cut(s) 53, 79, 170, 179, 217, 239, 273
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 3 cut(s) 54, 159, 213
DpnI GATC 2 cut(s) 10, 184
DpnII GATC 2 cut(s) 8, 182
Eco130I CCWWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 2 cut(s) 114, 155
FaiI YATR 3 cut(s) 36, 112, 153
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 110, 151
Fnu4HI GCNGC 3 cut(s) 39, 51, 284
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 3 cut(s) 39, 51, 284
FspBI CTAG 2 cut(s) 236, 267
GluI GCNGC 3 cut(s) 39, 51, 284
HaeIII GGCC 1 cut(s) 273
HgaI GACGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 2 cut(s) 114, 155
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 3 cut(s) 152, 267, 302
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 85, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 176
HpyF3I CTNAG 3 cut(s) 54, 159, 213
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 2 cut(s) 114, 155
Kzo9I GATC 2 cut(s) 8, 182
LpnPI CCDG 2 cut(s) 189, 231
Lsp1109I GCAGC 2 cut(s) 25, 62
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 236, 267
MaeII ACGT 1 cut(s) 97
MalI GATC 2 cut(s) 10, 184
MboI GATC 2 cut(s) 8, 182
MboII GAAGA 1 cut(s) 177
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 20, 120, 223
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 3 cut(s) 187, 263, 269
MseI TTAA 1 cut(s) 132
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 47, 176
NcoI CCATGG 1 cut(s) 110
NdeII GATC 2 cut(s) 8, 182
NlaIII CATG 2 cut(s) 114, 155
NmeAIII GCCGAG 1 cut(s) 299
PagI TCATGA 1 cut(s) 151
PkrI GCNGC 3 cut(s) 40, 52, 285
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 3 cut(s) 39, 51, 284
Sau3AI GATC 2 cut(s) 8, 182
SduI GDGCHC 1 cut(s) 151
SetI ASST 6 cut(s) 55, 81, 100, 181, 219, 241
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 102
Sse9I AATT 3 cut(s) 20, 120, 223
SsiI CCGC 1 cut(s) 283
SspMI CTAG 2 cut(s) 236, 267
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 181
TasI AATT 3 cut(s) 20, 120, 223
TauI GCSGC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 111
TseI GCWGC 2 cut(s) 38, 50
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 266
XspI CTAG 2 cut(s) 236, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.