Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002934.1

Orthogroup ID

OG0018007

Physical Location & Seq

Genomic Coordinates Forward (+)

156519 .. 157248

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002934.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgaagatagtttactggaacattcgtggcattggcaacaatgattctcgttctgagttgtcaaatgtgtgtcgtattcaccatccagatttggattttctccttcttcggtcaactactgcagttccttggatggctattggtgactttaattccattttgggtgcacatgattttataggtgggcaggttcctaatcagtcttcatgtgaggatttccgcagtgccatggatctctataacttcactcacttagacacagcaggtgctttcttcacttggtccaaaactttatttggtggccacatggaacgtcagttagatcgtactttgtgtgatggtcaatggttggattcttggtctcacactagttgcatggctcttcctctggccatctttaatcataattgtctagtcttcacggcaggcagtgctccatccgatggtccaaaacctttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

153

Amino Acids

17.11

Weight (kDa)

5.69

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31112
rosa_laevigata	RLG00000001955
rosa_multiflora	Rmu_co8033230.1_g000001 Rmu_sc0000546.1_g000064 Rmu_sc0002934.1_g000041 Rmu_sc0003382.1_g000025 Rmu_sc0004016.1_g000012
rosa_roxburghii	Rroxscaffold_7G00211220
rosa_samantha	Rh1DG293200 Rh6CG471400 Rh7DG334400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	2 cut(s)	178, 254
AccB7I	CCANNNNNTGG	1 cut(s)	443
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	2 cut(s)	301, 390
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	443
AhlI	ACTAGT	1 cut(s)	368
Alw21I	GWGCWC	2 cut(s)	169, 436
Alw26I	GTCTC	1 cut(s)	366
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	240
AoxI	GGCC	2 cut(s)	301, 390
ApaLI	GTGCAC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	282, 446
AsuHPI	GGTGA	2 cut(s)	71, 155
AvaII	GGWCC	2 cut(s)	282, 446
BaeGI	GKGCMC	1 cut(s)	169
BalI	TGGCCA	2 cut(s)	303, 392
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbsI	GAAGAC	2 cut(s)	195, 409
Bbv12I	GWGCWC	2 cut(s)	169, 436
BccI	CCATC	6 cut(s)	90, 127, 332, 401, 437, 445
BceAI	ACGGC	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	366
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	2 cut(s)	369, 413
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	2 cut(s)	178, 254
Bme18I	GGWCC	2 cut(s)	282, 446
BmgT120I	GGNCC	2 cut(s)	282, 446
BmiI	GGNNCC	1 cut(s)	192
BpiI	GAAGAC	2 cut(s)	195, 409
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	128, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	128, 228
BseGI	GGATG	3 cut(s)	82, 138, 437
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	303, 392
BsiHKAI	GWGCWC	2 cut(s)	169, 436
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	303, 392
Bso31I	GGTCTC	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	169, 436
Bsp143I	GATC	2 cut(s)	232, 322
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	2 cut(s)	303, 392
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	124
BspMI	ACCTGC	2 cut(s)	178, 254
BspPI	GGATC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	128, 228
BssMI	GATC	2 cut(s)	232, 322
BssT1I	CCWWGG	2 cut(s)	128, 228
Bst6I	CTCTTC	1 cut(s)	387
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	54, 253
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	82, 138, 437
BstKTI	GATC	2 cut(s)	235, 325
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	2 cut(s)	232, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	169
BstV2I	GAAGAC	2 cut(s)	195, 409
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	303, 392
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	82, 138, 437
BtsI	GCAGTG	2 cut(s)	229, 436
BtsIMutI	CAGTG	2 cut(s)	229, 436
BveI	ACCTGC	2 cut(s)	178, 254
Cac8I	GCNNGC	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	282, 446
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	5 cut(s)	170, 207, 229, 307, 376
CviJI	RGCY	4 cut(s)	137, 303, 380, 392
CviKI_1	RGCY	4 cut(s)	137, 303, 380, 392
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	2 cut(s)	54, 253
DpnI	GATC	2 cut(s)	234, 324
DpnII	GATC	2 cut(s)	232, 322
EaeI	YGGCCR	2 cut(s)	301, 390
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	128, 228
Eco31I	GGTCTC	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	282, 446
EcoT14I	CCWWGG	2 cut(s)	128, 228
ErhI	CCWWGG	2 cut(s)	128, 228
FaeI	CATG	5 cut(s)	173, 210, 232, 310, 379
FaiI	YATR	8 cut(s)	171, 179, 208, 230, 240, 308, 377, 405
FatI	CATG	5 cut(s)	169, 206, 228, 306, 375
FokI	GGATG	3 cut(s)	69, 145, 424
FspBI	CTAG	2 cut(s)	369, 413
HaeIII	GGCC	2 cut(s)	303, 392
Hin1II	CATG	5 cut(s)	173, 210, 232, 310, 379
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	44, 353
HphI	GGTGA	2 cut(s)	71, 155
Hpy166II	GTNNAC	3 cut(s)	13, 114, 167
Hpy188I	TCNGA	3 cut(s)	55, 442, 461
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	3 cut(s)	13, 114, 167
HpyAV	CCTTC	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	122, 167, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	54, 253
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	5 cut(s)	173, 210, 232, 310, 379
Kzo9I	GATC	2 cut(s)	232, 322
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	5 cut(s)	99, 173, 249, 374, 411
MaeI	CTAG	2 cut(s)	369, 413
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	234, 324
MboI	GATC	2 cut(s)	232, 322
MboII	GAAGA	6 cut(s)	16, 98, 195, 265, 374, 409
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	169, 436
MlsI	TGGCCA	2 cut(s)	303, 392
MluCI	AATT	2 cut(s)	151, 406
MluNI	TGGCCA	2 cut(s)	303, 392
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	2 cut(s)	205, 396
Mox20I	TGGCCA	2 cut(s)	303, 392
MscI	TGGCCA	2 cut(s)	303, 392
MseI	TTAA	2 cut(s)	150, 399
Msp20I	TGGCCA	2 cut(s)	303, 392
MwoI	GCNNNNNNNGC	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	232, 322
NlaIII	CATG	5 cut(s)	173, 210, 232, 310, 379
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	143
PaqCI	CACCTGC	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	44, 353
PflMI	CCANNNNNTGG	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	282, 446
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	150, 399
Sau3AI	GATC	2 cut(s)	232, 322
Sau96I	GGNCC	2 cut(s)	282, 446
SduI	GDGCHC	2 cut(s)	169, 436
SetI	ASST	5 cut(s)	184, 192, 268, 316, 457
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	282, 446
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	2 cut(s)	151, 406
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	2 cut(s)	369, 413
StyI	CCWWGG	2 cut(s)	128, 228
TaiI	ACGT	1 cut(s)	316
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	151, 406
TfiI	GAWTC	2 cut(s)	44, 353
Tru1I	TTAA	2 cut(s)	150, 399
Tru9I	TTAA	2 cut(s)	150, 399
TscAI	CASTG	2 cut(s)	229, 436
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	17, 195
TspRI	CASTG	2 cut(s)	229, 436
Van91I	CCANNNNNTGG	1 cut(s)	443
VneI	GTGCAC	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	282, 446
XspI	CTAG	2 cut(s)	369, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.