Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004016.1

Orthogroup ID

OG0018007

Physical Location & Seq

Genomic Coordinates Reverse (-)

70773 .. 72086

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004016.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggtagattttgattctatacctgcatcctattgggcttctttaaatcttagattgattatcatgaatgatcggggtagtcttactccaaatatttggcttttcatttcactgcatgttcctactcctattcttgtctctatttcagatcaacaggttacttttcagattactatggatggcactctgattcagtgcacttgtgtctatgcttccacaacgcttgttaagtgtaagactctttggttggagttacgaaatctccgtcaagttacaacaattccttgcatggtaatgggagattttaatgctgtcttaggagctcatgaatctaagggtgggaaaacccctagccgcatttcttgtgaggattttcggagtaccactgatctatgcaattttactcatctagacacttcaggggcttactttacatcgtctagagggtggggtcgtcggcgacttgagggacgactagactgctctttgtgcgatgataattggcttgctgcatggcctttcacttcttgtatggctctccctcgtatagtttctgaccacaatagtcttcttttcttggctaccaagtctttgctagggattggaaaaaaatcagtttttggggatgtccatcatagcctagaagtggctcgggctaagttggaggctattcaattggatattactgctaatgcatctagacgtcaagaggccttttggaggaaccgtgcccgtgttaagtggcttacaaaatgtgacaaatgctctgctttcttccatgcttacgctcgtaataagtttgcatgggctcgtatcaattatcttccagatggggatgttcttctttcagacccacagagcattgcttatcatgttgttgatttttataaaagcttgtatggtcctgggcctacgcctattgaggagattcgcaatgccgtattttctatggatccttctagtgctcctggttcagatgggtttcctggttctttctatcattgttgctgggacattgtaggcgctgatgttgttgcttttgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

348

Amino Acids

38.93

Weight (kDa)

7.52

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31112
rosa_laevigata	RLG00000001955
rosa_multiflora	Rmu_co8033230.1_g000001 Rmu_sc0000546.1_g000064 Rmu_sc0002934.1_g000041 Rmu_sc0003382.1_g000025 Rmu_sc0004016.1_g000012
rosa_roxburghii	Rroxscaffold_7G00211220
rosa_samantha	Rh1DG293200 Rh6CG471400 Rh7DG334400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	888
AatII	GACGTC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	31
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	947, 960
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	703
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	2 cut(s)	646, 720
AgsI	TTSAA	1 cut(s)	674
AjnI	CCWGG	3 cut(s)	904, 967, 985
AluBI	AGCT	2 cut(s)	323, 894
AluI	AGCT	2 cut(s)	323, 894
Alw21I	GWGCWC	3 cut(s)	200, 325, 967
Alw26I	GTCTC	1 cut(s)	142
Alw44I	GTGCAC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	947, 960
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	3 cut(s)	515, 711, 908
ApaLI	GTGCAC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspLEI	GCGC	1 cut(s)	1025
AspS9I	GGNCC	2 cut(s)	902, 908
AvaI	CYCGRG	1 cut(s)	651
AvaII	GGWCC	1 cut(s)	902
BaeGI	GKGCMC	2 cut(s)	200, 733
BamHI	GGATCC	1 cut(s)	952
BanII	GRGCYC	2 cut(s)	325, 811
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	3 cut(s)	200, 325, 967
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	4 cut(s)	173, 639, 824, 971
BceAI	ACGGC	1 cut(s)	923
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BciT130I	CCWGG	3 cut(s)	906, 969, 987
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	8 cut(s)	351, 410, 441, 476, 596, 641, 699, 960
BfoI	RGCGCY	1 cut(s)	1026
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	355, 510
BlsI	GCNGC	2 cut(s)	356, 511
Bme1390I	CCNGG	3 cut(s)	906, 969, 987
Bme18I	GGWCC	1 cut(s)	902
BmeT110I	CYCGRG	1 cut(s)	651
BmgT120I	GGNCC	2 cut(s)	902, 908
BmiI	GGNNCC	2 cut(s)	725, 954
BmrFI	CCNGG	3 cut(s)	906, 969, 987
BmsI	GCATC	2 cut(s)	35, 704
BpiI	GAAGAC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	703
BsaJI	CCNNGG	1 cut(s)	905
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 712, 742
Bsc4I	CCNNNNNNNGG	2 cut(s)	646, 720
Bse3DI	GCAATG	2 cut(s)	861, 940
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	3 cut(s)	906, 969, 987
BseDI	CCNNGG	1 cut(s)	905
BseGI	GGATG	4 cut(s)	26, 184, 631, 841
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	2 cut(s)	646, 720
BseMI	GCAATG	2 cut(s)	861, 940
BseRI	GAGGAG	1 cut(s)	938
BseSI	GKGCMC	2 cut(s)	200, 733
BseXI	GCAGC	1 cut(s)	496
BseYI	CCCAGC	1 cut(s)	1008
BshFI	GGCC	3 cut(s)	517, 713, 910
BsiHKAI	GWGCWC	3 cut(s)	200, 325, 967
BsiHKCI	CYCGRG	1 cut(s)	651
BslFI	GGGAC	2 cut(s)	483, 1025
BslI	CCNNNNNNNGG	2 cut(s)	646, 720
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	483, 1025
BsnI	GGCC	3 cut(s)	517, 713, 910
BsoBI	CYCGRG	1 cut(s)	651
Bsp1286I	GDGCHC	5 cut(s)	200, 325, 733, 811, 967
Bsp143I	GATC	4 cut(s)	70, 148, 388, 952
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	3 cut(s)	517, 713, 910
BspHI	TCATGA	2 cut(s)	63, 325
BspLI	GGNNCC	2 cut(s)	725, 954
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	947, 960
BsrDI	GCAATG	2 cut(s)	861, 940
BssECI	CCNNGG	1 cut(s)	905
BssMI	GATC	4 cut(s)	70, 148, 388, 952
BssNI	GRCGYC	1 cut(s)	703
Bst2UI	CCWGG	3 cut(s)	906, 969, 987
Bst4CI	ACNGT	1 cut(s)	728
BstACI	GRCGYC	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	4 cut(s)	50, 316, 333, 657
BstENI	CCTNNNNNAGG	1 cut(s)	718
BstF5I	GGATG	4 cut(s)	26, 184, 631, 841
BstH2I	RGCGCY	1 cut(s)	1026
BstHHI	GCGC	1 cut(s)	1025
BstKTI	GATC	4 cut(s)	73, 151, 391, 955
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	70, 148, 388, 952
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	3 cut(s)	906, 969, 987
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	904, 967, 985
BstSLI	GKGCMC	2 cut(s)	200, 733
BstV1I	GCAGC	1 cut(s)	496
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	952
BstXI	CCANNNNNNTGG	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	952
BsuRI	GGCC	3 cut(s)	517, 713, 910
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	4 cut(s)	26, 184, 631, 841
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	3 cut(s)	110, 200, 384
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	2 cut(s)	63, 325
CfoI	GCGC	1 cut(s)	1025
Cfr13I	GGNCC	2 cut(s)	902, 908
Csp6I	GTAC	1 cut(s)	381
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	8 cut(s)	64, 116, 289, 326, 513, 779, 804, 872
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	4 cut(s)	50, 316, 333, 657
DpnI	GATC	4 cut(s)	72, 150, 390, 954
DpnII	GATC	4 cut(s)	70, 148, 388, 952
DraI	TTTAAA	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	713
Eco24I	GRGCYC	2 cut(s)	325, 811
Eco47I	GGWCC	1 cut(s)	902
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	718
EcoRII	CCWGG	3 cut(s)	904, 967, 985
EcoT22I	ATGCAT	1 cut(s)	697
EcoT38I	GRGCYC	2 cut(s)	325, 811
FaeI	CATG	8 cut(s)	67, 119, 292, 329, 516, 782, 807, 875
FaqI	GGGAC	2 cut(s)	483, 1025
FatI	CATG	8 cut(s)	63, 115, 288, 325, 512, 778, 803, 871
Fnu4HI	GCNGC	2 cut(s)	355, 510
FokI	GGATG	4 cut(s)	13, 191, 638, 848
FriOI	GRGCYC	2 cut(s)	325, 811
Fsp4HI	GCNGC	2 cut(s)	355, 510
FspBI	CTAG	8 cut(s)	351, 410, 441, 476, 596, 641, 699, 960
GlaI	GCGC	1 cut(s)	1024
GluI	GCNGC	2 cut(s)	355, 510
GsaI	CCCAGC	1 cut(s)	1012
HaeII	RGCGCY	1 cut(s)	1026
HaeIII	GGCC	3 cut(s)	517, 713, 910
HhaI	GCGC	1 cut(s)	1025
Hin1I	GRCGYC	1 cut(s)	703
Hin1II	CATG	8 cut(s)	67, 119, 292, 329, 516, 782, 807, 875
Hin6I	GCGC	1 cut(s)	1023
HinP1I	GCGC	1 cut(s)	1023
HindIII	AAGCTT	1 cut(s)	892
HinfI	GANTC	5 cut(s)	14, 190, 238, 329, 928
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	7 cut(s)	148, 168, 189, 378, 556, 850, 976
Hpy188III	TCNNGA	7 cut(s)	64, 326, 410, 441, 699, 707, 827
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	459
HpyAV	CCTTC	1 cut(s)	966
HpyCH4III	ACNGT	1 cut(s)	728
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	8 cut(s)	26, 115, 198, 288, 396, 512, 695, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	4 cut(s)	50, 316, 333, 657
HpySE526I	ACGT	1 cut(s)	703
Hsp92I	GRCGYC	1 cut(s)	703
Hsp92II	CATG	8 cut(s)	67, 119, 292, 329, 516, 782, 807, 875
HspAI	GCGC	1 cut(s)	1023
Kzo9I	GATC	4 cut(s)	70, 148, 388, 952
LmnI	GCTCC	2 cut(s)	320, 970
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	2 cut(s)	35, 704
MaeI	CTAG	8 cut(s)	351, 410, 441, 476, 596, 641, 699, 960
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	4 cut(s)	157, 252, 271, 755
MalI	GATC	4 cut(s)	72, 150, 390, 954
MboI	GATC	4 cut(s)	70, 148, 388, 952
MboII	GAAGA	4 cut(s)	560, 766, 815, 833
MfeI	CAATTG	1 cut(s)	674
MflI	RGATCY	1 cut(s)	952
MhlI	GDGCHC	5 cut(s)	200, 325, 733, 811, 967
MluCI	AATT	5 cut(s)	279, 397, 499, 674, 817
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	2 cut(s)	228, 642
MnlI	CCTC	8 cut(s)	361, 437, 460, 552, 658, 703, 714, 916
Mph1103I	ATGCAT	1 cut(s)	697
MseI	TTAA	4 cut(s)	44, 228, 306, 738
MslI	CAYNNNNRTG	1 cut(s)	293
MspR9I	CCNGG	3 cut(s)	906, 969, 987
MunI	CAATTG	1 cut(s)	674
MvaI	CCWGG	3 cut(s)	906, 969, 987
MwoI	GCNNNNNNNGC	1 cut(s)	489
NdeII	GATC	4 cut(s)	70, 148, 388, 952
NlaIII	CATG	8 cut(s)	67, 119, 292, 329, 516, 782, 807, 875
NlaIV	GGNNCC	2 cut(s)	725, 954
NmuCI	GTSAC	1 cut(s)	755
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	1 cut(s)	119
PagI	TCATGA	2 cut(s)	63, 325
PceI	AGGCCT	1 cut(s)	713
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	14, 190, 329, 928
PkrI	GCNGC	2 cut(s)	356, 511
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	888
Psp124BI	GAGCTC	1 cut(s)	325
Psp6I	CCWGG	3 cut(s)	904, 967, 985
PspFI	CCCAGC	1 cut(s)	1008
PspGI	CCWGG	3 cut(s)	904, 967, 985
PspN4I	GGNNCC	2 cut(s)	725, 954
PspPI	GGNCC	2 cut(s)	902, 908
PsuI	RGATCY	1 cut(s)	952
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	4 cut(s)	44, 228, 306, 738
SatI	GCNGC	2 cut(s)	355, 510
Sau3AI	GATC	4 cut(s)	70, 148, 388, 952
Sau96I	GGNCC	2 cut(s)	902, 908
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	3 cut(s)	906, 969, 987
SduI	GDGCHC	5 cut(s)	200, 325, 733, 811, 967
SetI	ASST	5 cut(s)	25, 159, 325, 706, 896
SfaNI	GCATC	2 cut(s)	35, 704
SinI	GGWCC	1 cut(s)	902
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	279, 397, 499, 674, 817
SseBI	AGGCCT	1 cut(s)	713
SsiI	CCGC	1 cut(s)	355
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	8 cut(s)	351, 410, 441, 476, 596, 641, 699, 960
SstI	GAGCTC	1 cut(s)	325
StuI	AGGCCT	1 cut(s)	713
StyD4I	CCNGG	3 cut(s)	904, 967, 985
TaaI	ACNGT	1 cut(s)	728
TaiI	ACGT	1 cut(s)	706
TasI	AATT	5 cut(s)	279, 397, 499, 674, 817
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	4 cut(s)	14, 190, 329, 928
Tru1I	TTAA	4 cut(s)	44, 228, 306, 738
Tru9I	TTAA	4 cut(s)	44, 228, 306, 738
TscAI	CASTG	3 cut(s)	117, 200, 391
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	3 cut(s)	80, 94, 342
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	3 cut(s)	117, 200, 391
VneI	GTGCAC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	902
XagI	CCTNNNNNAGG	1 cut(s)	718
XbaI	TCTAGA	3 cut(s)	409, 440, 698
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	8 cut(s)	351, 410, 441, 476, 596, 641, 699, 960
ZraI	GACGTC	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.