Rh1DG293200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018007
Physical Location & Seq
Reverse (-)
51791526 .. 51791925
400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG293200.1

Sequence Viewer

Length: 312 bp
ATGAGGAAGGTTGTGGATACCGTAACAAGGGAGGTTGTGGAGGGAGTTGAGACTCCACCCGCAATGCCGCAATTGGCATCCATTTCAGTAACTGAAGCTGTTACTGCTGAGCTCCCTACGGCTAACAAAGATATGCATGCTCTGACCAATGTTAGTGCCTCAGTTGTCGTGAACAATGCTAGTATCCCAGCTGCTACCCAAGACGGAGTTGTTGTCCTTGTGGGTAACGTTCTTGAAGAGGCTGCTTCAGAAATCATGCAGGAGCTTGCAGAGAGGACAGCTCACGGGCTGCAGCAGAGGTTGATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.88

Weight (kDa)

4.57

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 60, 68
AclI AACGTT 1 cut(s) 228
AcuI CTGAAG 2 cut(s) 114, 231
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 5 cut(s) 98, 112, 191, 265, 281
AluI AGCT 5 cut(s) 98, 112, 191, 265, 281
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 4 cut(s) 191, 242, 289, 292
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 4 cut(s) 178, 229, 276, 304
BceAI ACGGC 1 cut(s) 135
BciVI GTATCC 2 cut(s) 10, 194
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 290
BfuI GTATCC 2 cut(s) 10, 194
BisI GCNGC 5 cut(s) 68, 192, 243, 290, 293
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 5 cut(s) 69, 193, 244, 291, 294
BmsI GCATC 2 cut(s) 86, 294
BplI GAGNNNNNCTC 2 cut(s) 265, 297
Bpu1102I GCTNAGC 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 69
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 99, 174
BseXI GCAGC 4 cut(s) 178, 229, 276, 304
BseYI CCCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 114
Bsp1720I GCTNAGC 1 cut(s) 108
BspACI CCGC 2 cut(s) 60, 68
BspCNI CTCAG 2 cut(s) 100, 173
BspMAI CTGCAG 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 138, 267
BstDEI CTNAG 2 cut(s) 108, 160
BstF5I GGATG 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 290
BstV1I GCAGC 4 cut(s) 178, 229, 276, 304
BsuI GTATCC 2 cut(s) 10, 194
BtsCI GGATG 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 138, 267
CaiI CAGNNNCTG 1 cut(s) 92
CviAII CATG 2 cut(s) 137, 256
CviJI RGCY 8 cut(s) 98, 112, 122, 191, 242, 265, 281, 289
CviKI_1 RGCY 8 cut(s) 98, 112, 122, 191, 242, 265, 281, 289
DdeI CTNAG 2 cut(s) 108, 160
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 114, 231
EcoICRI GAGCTC 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 2 cut(s) 140, 259
FaiI YATR 3 cut(s) 134, 138, 257
FatI CATG 2 cut(s) 136, 255
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 5 cut(s) 68, 192, 243, 290, 293
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 5 cut(s) 68, 192, 243, 290, 293
FspBI CTAG 1 cut(s) 180
GluI GCNGC 5 cut(s) 68, 192, 243, 290, 293
GsaI CCCAGC 1 cut(s) 191
Hin1II CATG 2 cut(s) 140, 259
HinfI GANTC 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 144, 250
Hpy188III TCNNGA 2 cut(s) 169, 233
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 136, 259, 269, 292, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 108, 160
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 2 cut(s) 140, 259
LmnI GCTCC 2 cut(s) 117, 262
LpnPI CCDG 2 cut(s) 201, 245
Lsp1109I GCAGC 4 cut(s) 178, 229, 276, 304
LweI GCATC 2 cut(s) 86, 294
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 4 cut(s) 22, 88, 100, 224
MboII GAAGA 1 cut(s) 248
MfeI CAATTG 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 71
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 6 cut(s) 25, 34, 169, 232, 267, 291
Mph1103I ATGCAT 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 191
MunI CAATTG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 140, 259
NsiI ATGCAT 1 cut(s) 138
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PkrI GCNGC 5 cut(s) 69, 193, 244, 291, 294
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 114
Psp1406I AACGTT 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 187
PstI CTGCAG 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 114
SatI GCNGC 5 cut(s) 68, 192, 243, 290, 293
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 12, 36, 100, 114, 193, 231, 267, 283, 302
SfaNI GCATC 2 cut(s) 86, 294
SfcI CTRYAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 140
Sse9I AATT 1 cut(s) 71
SsiI CCGC 2 cut(s) 60, 68
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 1 cut(s) 114
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 231
TasI AATT 1 cut(s) 71
TauI GCSGC 1 cut(s) 70
TseI GCWGC 4 cut(s) 191, 242, 289, 292
TspGWI ACGGA 1 cut(s) 219
XceI RCATGY 1 cut(s) 140
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.