Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8059366.1

Orthogroup ID

OG0017463

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 187

Gene Structure 187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8059366.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 187 bp

cacaccaccacctcctcattcctcactcaaatttcatcaattcctcatcctcatgccgtaccaagtgcggatcactccctccgacgacctcgaaacagtcggccgctacgacttcgaaaccaaactcgggtccacaatgatgcacgacttcgccatcacagaaaacatagtcgtgattcccgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

61

Amino Acids

6.99

Weight (kDa)

5.04

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017463)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8059366.1_g000001 Rmu_sc0000399.1_g000028 Rmu_sc0000870.1_g000081 Rmu_sc0008242.1_g000014 Rmu_sc0008673.1_g000014 Rmu_sc0011538.1_g000005 Rmu_sc0011941.1_g000009 Rmu_sc0012461.1_g000005 Rmu_sc0014898.1_g000007 Rmu_ssc0000279.1_g000008
rosa_roxburghii	Rroxscaffold_7G00181920
rosa_samantha	Rh2CG247800 Rh2DG614400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	68, 104
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	30
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	127
AlwI	GGATC	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	130
AsuII	TTCGAA	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	130
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	4
BseX3I	CGGCCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	68, 104
BspANI	GGCC	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	78
BspT104I	TTCGAA	1 cut(s)	115
BssMI	GATC	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMCI	CGRYCG	1 cut(s)	104
BstZI	CGGCCG	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	1 cut(s)	103
CviKI_1	RGCY	1 cut(s)	103
CviQI	GTAC	1 cut(s)	59
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	130
Eco52I	CGGCCG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	126
FaeI	CATG	1 cut(s)	56
FaiI	YATR	2 cut(s)	54, 168
FatI	CATG	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	173, 180
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	70
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	185
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MluCI	AATT	2 cut(s)	30, 39
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	7 cut(s)	22, 25, 32, 54, 60, 89, 99
MslI	CAYNNNNRTG	3 cut(s)	51, 138, 171
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	2 cut(s)	106, 178
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	3 cut(s)	51, 138, 171
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	130
SetI	ASST	2 cut(s)	14, 91
SfaNI	GCATC	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	115
SgeI	CNNG	6 cut(s)	65, 75, 102, 138, 140, 156
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	3 cut(s)	51, 138, 171
Sse9I	AATT	2 cut(s)	30, 39
SsiI	CCGC	2 cut(s)	68, 104
SspMI	CTAG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	91, 115
TasI	AATT	2 cut(s)	30, 39
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	30
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.