Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011941.1

Orthogroup ID

OG0017463

Physical Location & Seq

Genomic Coordinates Reverse (-)

51093 .. 51842

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011941.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgcaaaacttatcactttggtaccccaaatttgaagcccaacccaataatggtacaccatccataatggcgtttaagtctcaagccatgtggcaaaccatgagggataattgggtcatctcgttacccatctatctccttcaccttctctctgcgcagtcacccatctatctcaccacacccatcttcttccttcacaaaaacagtagccacccaacctcttcctcactctcattctctctagcttcaaacgtacacaccaccacctcctcatccctcactcttctatcatttgttcatcctcattcctcactcaaatttcatcaattcctcatcctcatgtcataccaagtgcgggtcactccttccggcgacctcgaaacagtcggccgctatgacttcgaaacccaactcgggtctacaatgtctagtcacctccacacgctcagctacgacatcatgaaaaggccttacctgaaatacttccaattctccaccgacggaaagaaatctctggacatggaaatccctctggcggcccccaaattgatgaacgacttctccattaccgaaaactttgtcttgattcccgaccagcaagtggtgtttaagcttcaggagatgatcaccgacgggtcgccgtttatctacgagaagaacaagaaatctaggttcagaattctgatggccaatagaaaactcagaccaatagcaattatcatactagtcatcatattatggttaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

249

Amino Acids

28.67

Weight (kDa)

9.52

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017463)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8059366.1_g000001 Rmu_sc0000399.1_g000028 Rmu_sc0000870.1_g000081 Rmu_sc0008242.1_g000014 Rmu_sc0008673.1_g000014 Rmu_sc0011538.1_g000005 Rmu_sc0011941.1_g000009 Rmu_sc0012461.1_g000005 Rmu_sc0014898.1_g000007 Rmu_ssc0000279.1_g000008
rosa_roxburghii	Rroxscaffold_7G00181920
rosa_samantha	Rh2CG247800 Rh2DG614400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	156
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	21
AccB7I	CCANNNNNTGG	1 cut(s)	601
AccI	GTMKAC	1 cut(s)	419
AciI	CCGC	3 cut(s)	355, 391, 536
AcoI	YGGCCR	2 cut(s)	388, 687
AcsI	RAATTY	3 cut(s)	29, 317, 678
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	3 cut(s)	23, 55, 255
AfiI	CCNNNNNNNGG	5 cut(s)	50, 355, 414, 535, 601
AgsI	TTSAA	2 cut(s)	35, 249
AhlI	ACTAGT	1 cut(s)	724
AloI	GAACNNNNNNTCC	2 cut(s)	545, 577
AluBI	AGCT	3 cut(s)	245, 450, 613
AluI	AGCT	3 cut(s)	245, 450, 613
Alw26I	GTCTC	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	4 cut(s)	388, 467, 537, 687
ApoI	RAATTY	3 cut(s)	29, 317, 678
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
Asp700I	GAANNNNTTC	2 cut(s)	482, 557
Asp718I	GGTACC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	538
AsuHPI	GGTGA	5 cut(s)	134, 153, 166, 425, 619
AsuII	TTCGAA	1 cut(s)	402
AvaI	CYCGRG	1 cut(s)	413
BaeI	ACNNNNGTAYC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	21
BccI	CCATC	5 cut(s)	67, 137, 173, 191, 679
BceAI	ACGGC	1 cut(s)	625
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	724
BfaI	CTAG	4 cut(s)	242, 429, 669, 725
BisI	GCNGC	2 cut(s)	391, 537
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	2 cut(s)	392, 538
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	23, 540
Bpu1102I	GCTNAGC	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 355, 414, 535, 601
BseGI	GGATG	4 cut(s)	59, 272, 298, 333
BseLI	CCNNNNNNNGG	5 cut(s)	50, 355, 414, 535, 601
BseMII	CTCAG	2 cut(s)	460, 715
BseRI	GAGGAG	1 cut(s)	259
BseX3I	CGGCCG	1 cut(s)	388
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	4 cut(s)	390, 469, 539, 689
BshNI	GGYRCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	5 cut(s)	50, 355, 414, 535, 601
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	390, 469, 539, 689
BsoBI	CYCGRG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	624
Bsp1720I	GCTNAGC	1 cut(s)	446
BspACI	CCGC	3 cut(s)	355, 391, 536
BspANI	GGCC	4 cut(s)	390, 469, 539, 689
BspCNI	CTCAG	2 cut(s)	459, 714
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	23, 540
BspT104I	TTCGAA	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	21
BssMI	GATC	1 cut(s)	624
Bst4CI	ACNGT	2 cut(s)	206, 385
Bst6I	CTCTTC	2 cut(s)	226, 288
BstBI	TTCGAA	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	446, 701
BstF5I	GGATG	4 cut(s)	59, 272, 298, 333
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	1 cut(s)	627
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	624
BstMCI	CGRYCG	1 cut(s)	391
BstZI	CGGCCG	1 cut(s)	388
BsuRI	GGCC	4 cut(s)	390, 469, 539, 689
BtsCI	GGATG	4 cut(s)	59, 272, 298, 333
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	538
Csp6I	GTAC	3 cut(s)	22, 54, 254
CspCI	CAANNNNNGTGG	2 cut(s)	71, 106
CviAII	CATG	5 cut(s)	88, 100, 340, 460, 520
CviQI	GTAC	3 cut(s)	22, 54, 254
DdeI	CTNAG	2 cut(s)	446, 701
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
EaeI	YGGCCR	2 cut(s)	388, 687
EagI	CGGCCG	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	226, 288
EarI	CTCTTC	2 cut(s)	226, 288
EclXI	CGGCCG	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	469
Eco52I	CGGCCG	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	678
FaeI	CATG	5 cut(s)	91, 103, 343, 463, 523
FatI	CATG	5 cut(s)	87, 99, 339, 459, 519
FauI	CCCGC	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	2 cut(s)	391, 537
FokI	GGATG	4 cut(s)	46, 259, 285, 320
Fsp4HI	GCNGC	2 cut(s)	391, 537
FspBI	CTAG	4 cut(s)	242, 429, 669, 725
FspI	TGCGCA	1 cut(s)	156
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	2 cut(s)	391, 537
HaeIII	GGCC	4 cut(s)	390, 469, 539, 689
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	5 cut(s)	91, 103, 343, 463, 523
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	1 cut(s)	586
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	5 cut(s)	134, 153, 166, 425, 619
Hpy166II	GTNNAC	3 cut(s)	56, 256, 420
Hpy188I	TCNGA	3 cut(s)	677, 684, 704
Hpy188III	TCNNGA	5 cut(s)	460, 515, 583, 590, 617
Hpy8I	GTNNAC	3 cut(s)	56, 256, 420
Hpy99I	CGWCG	2 cut(s)	503, 635
HpyAV	CCTTC	4 cut(s)	149, 155, 203, 375
HpyCH4III	ACNGT	2 cut(s)	206, 385
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	446, 701
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	5 cut(s)	91, 103, 343, 463, 523
HspAI	GCGC	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	624
LpnPI	CCDG	6 cut(s)	382, 488, 500, 518, 602, 608
MaeI	CTAG	4 cut(s)	242, 429, 669, 725
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	4 cut(s)	123, 159, 358, 431
MalI	GATC	1 cut(s)	626
MboI	GATC	1 cut(s)	624
MboII	GAAGA	5 cut(s)	178, 181, 213, 275, 667
MlsI	TGGCCA	1 cut(s)	689
MluCI	AATT	8 cut(s)	29, 109, 317, 326, 488, 545, 678, 714
MluNI	TGGCCA	1 cut(s)	689
Mox20I	TGGCCA	1 cut(s)	689
MroXI	GAANNNNTTC	2 cut(s)	482, 557
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	3 cut(s)	75, 609, 743
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	689
MspI	CCGG	1 cut(s)	369
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	5 cut(s)	91, 103, 343, 463, 523
NlaIV	GGNNCC	2 cut(s)	23, 540
NmuCI	GTSAC	3 cut(s)	159, 358, 431
NsbI	TGCGCA	1 cut(s)	156
NspV	TTCGAA	1 cut(s)	402
PagI	TCATGA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	469
PdmI	GAANNNNTTC	2 cut(s)	482, 557
PfeI	GAWTC	1 cut(s)	586
PflMI	CCANNNNNTGG	1 cut(s)	601
PkrI	GCNGC	2 cut(s)	392, 538
PspN4I	GGNNCC	2 cut(s)	23, 540
PspPI	GGNCC	1 cut(s)	538
RsaI	GTAC	3 cut(s)	23, 55, 255
RsaNI	GTAC	3 cut(s)	22, 54, 254
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	3 cut(s)	75, 609, 743
SatI	GCNGC	2 cut(s)	391, 537
Sau3AI	GATC	1 cut(s)	624
Sau96I	GGNCC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
SpeI	ACTAGT	1 cut(s)	724
Sse9I	AATT	8 cut(s)	29, 109, 317, 326, 488, 545, 678, 714
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	3 cut(s)	355, 391, 536
SspMI	CTAG	4 cut(s)	242, 429, 669, 725
StuI	AGGCCT	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	206, 385
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	378, 402
TasI	AATT	8 cut(s)	29, 109, 317, 326, 488, 545, 678, 714
TauI	GCSGC	2 cut(s)	393, 539
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	3 cut(s)	75, 609, 743
Tru9I	TTAA	3 cut(s)	75, 609, 743
TseFI	GTSAC	3 cut(s)	159, 358, 431
Tsp45I	GTSAC	3 cut(s)	159, 358, 431
TspDTI	ATGAA	4 cut(s)	287, 311, 476, 566
TspGWI	ACGGA	1 cut(s)	516
Van91I	CCANNNNNTGG	1 cut(s)	601
XapI	RAATTY	3 cut(s)	29, 317, 678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	419
XmnI	GAANNNNTTC	2 cut(s)	482, 557
XspI	CTAG	4 cut(s)	242, 429, 669, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.