Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017463

Physical Location & Seq

Genomic Coordinates Reverse (-)

26029531 .. 26029857

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG247800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCTGGTCACCTCCACACGCTCAGCTACGACATCATGAAAAGGCCTTACCTGAAATACTTCCAATTCTCCACCGACGGAAAGAAATCTCTGGACATGGAAATCCCTCTGGCGGCCCCCAAATTGATGCACGACTTCTCCATTACCGAAAACTTTGTCGTGATTCCCGACCAGCAAGTGGTGTTTAAGCTTCAGGAGATGATCACCGACGGGTCGCCGTTTATCTACGACAAGAACAAGAAATCTAGGTTCAGAATTCTGATGGCCAATAGAAAACTCAGACCAATAGCAATTATCATACTAGTCATCATATTATGGTTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

108

Amino Acids

12.7

Weight (kDa)

9.7

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	3 - 87	1.2e-16	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017463)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8059366.1_g000001 Rmu_sc0000399.1_g000028 Rmu_sc0000870.1_g000081 Rmu_sc0008242.1_g000014 Rmu_sc0008673.1_g000014 Rmu_sc0011538.1_g000005 Rmu_sc0011941.1_g000009 Rmu_sc0012461.1_g000005 Rmu_sc0014898.1_g000007 Rmu_ssc0000279.1_g000008
rosa_roxburghii	Rroxscaffold_7G00181920
rosa_samantha	Rh2CG247800 Rh2DG614400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	178
AciI	CCGC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	112, 178
AhlI	ACTAGT	1 cut(s)	301
AluBI	AGCT	2 cut(s)	27, 190
AluI	AGCT	2 cut(s)	27, 190
AoxI	GGCC	3 cut(s)	44, 114, 264
ApoI	RAATTY	1 cut(s)	255
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	266
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	201
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	2 cut(s)	246, 302
BisI	GCNGC	1 cut(s)	114
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 178
BseLI	CCNNNNNNNGG	2 cut(s)	112, 178
BseMII	CTCAG	2 cut(s)	37, 292
BshFI	GGCC	3 cut(s)	46, 116, 266
BslI	CCNNNNNNNGG	2 cut(s)	112, 178
BsnI	GGCC	3 cut(s)	46, 116, 266
Bsp143I	GATC	1 cut(s)	201
Bsp1720I	GCTNAGC	1 cut(s)	23
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	3 cut(s)	46, 116, 266
BspCNI	CTCAG	2 cut(s)	36, 291
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	117
BssMI	GATC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	23, 278
BstEII	GGTNACC	1 cut(s)	8
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstPI	GGTNACC	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	46, 116, 266
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	115
CviAII	CATG	2 cut(s)	37, 97
CviJI	RGCY	5 cut(s)	27, 46, 116, 190, 266
CviKI_1	RGCY	5 cut(s)	27, 46, 116, 190, 266
DdeI	CTNAG	2 cut(s)	23, 278
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	40, 100
FaiI	YATR	5 cut(s)	38, 98, 299, 311, 316
FatI	CATG	2 cut(s)	36, 96
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	2 cut(s)	246, 302
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	46, 116, 266
Hin1II	CATG	2 cut(s)	40, 100
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	254, 261, 281
Hpy188III	TCNNGA	5 cut(s)	37, 92, 160, 167, 194
Hpy99I	CGWCG	2 cut(s)	80, 212
HpyCH4V	TGCA	1 cut(s)	130
HpyF3I	CTNAG	2 cut(s)	23, 278
Hsp92II	CATG	2 cut(s)	40, 100
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	5 cut(s)	65, 77, 95, 179, 185
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	2 cut(s)	246, 302
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	4 cut(s)	65, 122, 255, 291
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	2 cut(s)	23, 117
Mox20I	TGGCCA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	2 cut(s)	186, 320
Msp20I	TGGCCA	1 cut(s)	266
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	40, 100
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	115
PspEI	GGTNACC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	186, 320
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	115
SetI	ASST	5 cut(s)	15, 29, 54, 192, 251
SfaNI	GCATC	1 cut(s)	117
SpeI	ACTAGT	1 cut(s)	301
Sse9I	AATT	4 cut(s)	65, 122, 255, 291
SseBI	AGGCCT	1 cut(s)	46
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	2 cut(s)	246, 302
StuI	AGGCCT	1 cut(s)	46
TasI	AATT	4 cut(s)	65, 122, 255, 291
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	186, 320
Tru9I	TTAA	2 cut(s)	186, 320
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	2 cut(s)	246, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.