Rroxscaffold_7G00181920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017463
Physical Location & Seq
Forward (+)
20958432 .. 20962920
4489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181920.1

Sequence Viewer

Length: 525 bp
ATGACATTGCGAAGGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGTGGAAGAACCAAGTGCTGTTCGGTGGAAGAACCACCGCTGCGGTAGTTCATGAGAAGGCGTTGAGTTGGTTGAAGTTACACGACGAAGCACGTATATTAGATGCTGTCTTATACAAAAATCATAAATGGCACAAGTCACCAAGGACGCATAGTGAACAACAACCGCTATCTCTACCAACATCCTTGCTGGAGCCATTGATGCAACCATCGCCCAAGACGCCTGTCGCCGCCCCGAAGCCTAGGTTCGCAAAACCAGCTGCACCTCCAATCGACGGCCAGCCACACCAAAGTCATGACTGTCCCCGTCCACCCGTCAATGTCATCGACCAACTCAAACCATCCGTGGCAAGAAAGTTGGCCACGAGATTTTCTTGCCACGTATGGTCCTACATCACCGCAGTCACCTCCTGCAAATGGCCACCACCAATCCTTGGACCGAAGCCCAAAACCCGACGCAGATCTGCCAAACCGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.59

Weight (kDa)

10.2

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 479
AciI CCGC 5 cut(s) 84, 89, 212, 276, 444
AcoI YGGCCR 3 cut(s) 322, 405, 464
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 3 cut(s) 320, 462, 479
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
AoxI GGCC 3 cut(s) 322, 405, 464
ApeKI GCWGC 2 cut(s) 86, 305
AspA2I CCTAGG 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 432, 482
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 177, 433, 442
AvaII GGWCC 2 cut(s) 432, 482
AvrII CCTAGG 1 cut(s) 287
BalI TGGCCA 2 cut(s) 407, 466
BauI CACGAG 1 cut(s) 409
BbvI GCAGC 2 cut(s) 73, 292
BccI CCATC 2 cut(s) 262, 394
BceAI ACGGC 1 cut(s) 337
BcnI CCSGG 1 cut(s) 519
BfaI CTAG 1 cut(s) 288
BglII AGATCT 1 cut(s) 506
BisI GCNGC 3 cut(s) 87, 276, 306
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 3 cut(s) 88, 277, 307
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 2 cut(s) 432, 482
BmgT120I GGNCC 2 cut(s) 432, 482
BmiI GGNNCC 2 cut(s) 45, 240
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 139, 237
BoxI GACNNNNGTC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 519
BsaAI YACGTR 2 cut(s) 140, 427
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 5 cut(s) 47, 188, 287, 390, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 462, 479
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 5 cut(s) 47, 188, 287, 390, 478
BseGI GGATG 2 cut(s) 227, 386
BseLI CCNNNNNNNGG 3 cut(s) 320, 462, 479
BseMI GCAATG 1 cut(s) 5
BseXI GCAGC 2 cut(s) 73, 292
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 3 cut(s) 324, 407, 466
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 3 cut(s) 320, 462, 479
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 3 cut(s) 324, 407, 466
Bsp1407I TGTACA 1 cut(s) 37
Bsp143I GATC 1 cut(s) 506
BspACI CCGC 5 cut(s) 84, 89, 212, 276, 444
BspANI GGCC 3 cut(s) 324, 407, 466
BspHI TCATGA 2 cut(s) 97, 340
BspLI GGNNCC 2 cut(s) 45, 240
BsrDI GCAATG 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 37
BssECI CCNNGG 5 cut(s) 47, 188, 287, 390, 478
BssMI GATC 1 cut(s) 506
BssNI GRCGYC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 409
BssT1I CCWWGG 3 cut(s) 188, 287, 478
Bst2BI CACGAG 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 347
BstACI GRCGYC 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 37
BstBAI YACGTR 2 cut(s) 140, 427
BstC8I GCNNGC 1 cut(s) 326
BstDSI CCRYGG 2 cut(s) 47, 390
BstF5I GGATG 2 cut(s) 227, 386
BstKTI GATC 1 cut(s) 509
BstMBI GATC 1 cut(s) 506
BstMWI GCNNNNNNNGC 4 cut(s) 247, 256, 265, 302
BstPAI GACNNNNGTC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 517
BstV1I GCAGC 2 cut(s) 73, 292
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BsuRI GGCC 3 cut(s) 324, 407, 466
BtgI CCRYGG 2 cut(s) 47, 390
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 227, 386
Cac8I GCNNGC 1 cut(s) 326
CciI TCATGA 2 cut(s) 97, 340
Cfr13I GGNCC 2 cut(s) 432, 482
CseI GACGC 3 cut(s) 202, 274, 510
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 98, 341
CviJI RGCY 9 cut(s) 241, 286, 305, 324, 328, 407, 466, 490, 522
CviKI_1 RGCY 9 cut(s) 241, 286, 305, 324, 328, 407, 466, 490, 522
CviQI GTAC 1 cut(s) 38
DpnI GATC 1 cut(s) 508
DpnII GATC 1 cut(s) 506
EaeI YGGCCR 3 cut(s) 322, 405, 464
Eco130I CCWWGG 3 cut(s) 188, 287, 478
Eco47I GGWCC 2 cut(s) 432, 482
EcoT14I CCWWGG 3 cut(s) 188, 287, 478
ErhI CCWWGG 3 cut(s) 188, 287, 478
FaeI CATG 2 cut(s) 101, 344
FaiI YATR 7 cut(s) 99, 143, 160, 171, 198, 342, 430
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 97, 340
Fnu4HI GCNGC 3 cut(s) 87, 276, 306
FokI GGATG 2 cut(s) 214, 373
Fsp4HI GCNGC 3 cut(s) 87, 276, 306
FspBI CTAG 1 cut(s) 288
GluI GCNGC 3 cut(s) 87, 276, 306
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 3 cut(s) 324, 407, 466
HapII CCGG 1 cut(s) 518
HgaI GACGC 3 cut(s) 202, 274, 510
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 2 cut(s) 101, 344
HpaII CCGG 1 cut(s) 518
HphI GGTGA 3 cut(s) 177, 433, 442
Hpy166II GTNNAC 2 cut(s) 203, 356
Hpy188III TCNNGA 2 cut(s) 98, 341
Hpy8I GTNNAC 2 cut(s) 203, 356
Hpy99I CGWCG 3 cut(s) 134, 323, 504
HpyAV CCTTC 2 cut(s) 6, 97
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 2 cut(s) 139, 426
HpyCH4V TGCA 3 cut(s) 250, 308, 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 256, 265, 302
HpySE526I ACGT 2 cut(s) 139, 426
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 101, 344
Kzo9I GATC 1 cut(s) 506
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 26, 221, 282, 315, 338, 469
Lsp1109I GCAGC 2 cut(s) 73, 292
LweI GCATC 2 cut(s) 139, 237
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 139, 426
MaeIII GTNAC 3 cut(s) 123, 183, 448
MalI GATC 1 cut(s) 508
MboI GATC 1 cut(s) 506
MboII GAAGA 4 cut(s) 35, 38, 64, 87
MflI RGATCY 1 cut(s) 506
MlsI TGGCCA 2 cut(s) 407, 466
MluNI TGGCCA 2 cut(s) 407, 466
MnlI CCTC 2 cut(s) 321, 463
Mox20I TGGCCA 2 cut(s) 407, 466
MscI TGGCCA 2 cut(s) 407, 466
Msp20I TGGCCA 2 cut(s) 407, 466
MspA1I CMGCKG 2 cut(s) 86, 305
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 519
MwoI GCNNNNNNNGC 4 cut(s) 247, 256, 265, 302
NciI CCSGG 1 cut(s) 519
NdeII GATC 1 cut(s) 506
NlaIII CATG 2 cut(s) 101, 344
NlaIV GGNNCC 2 cut(s) 45, 240
NmuCI GTSAC 2 cut(s) 183, 448
PagI TCATGA 2 cut(s) 97, 340
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 3 cut(s) 88, 277, 307
Ppu21I YACGTR 2 cut(s) 140, 427
PshAI GACNNNNGTC 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 45, 240
PspPI GGNCC 2 cut(s) 432, 482
PsuI RGATCY 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SatI GCNGC 3 cut(s) 87, 276, 306
Sau3AI GATC 1 cut(s) 506
Sau96I GGNCC 2 cut(s) 432, 482
ScrFI CCNGG 1 cut(s) 519
SetI ASST 8 cut(s) 36, 45, 142, 293, 307, 313, 429, 455
SfaNI GCATC 2 cut(s) 139, 237
SinI GGWCC 2 cut(s) 432, 482
SsiI CCGC 5 cut(s) 84, 89, 212, 276, 444
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 3 cut(s) 188, 287, 478
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 2 cut(s) 142, 429
TaqI TCGA 2 cut(s) 318, 372
TaqII GACCGA 1 cut(s) 499
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 278
TseFI GTSAC 2 cut(s) 183, 448
TseI GCWGC 2 cut(s) 86, 305
Tsp45I GTSAC 2 cut(s) 183, 448
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 2 cut(s) 36, 379
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 2 cut(s) 432, 482
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.