Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011538.1

Orthogroup ID

OG0017463

Physical Location & Seq

Genomic Coordinates Reverse (-)

15026 .. 15463

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011538.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgcaaaactatcactttggtaccccaaatttgaagcctgacccaagaacggtacacgccgtccataacagtgttaagagcccagccacgtggcaatacctgaagggtaattgggtcatttcgttacccatctatctccttcacctattctctgcgcagccacccatctacctcaccacacccattttcttccttcacaaaaacagcagccaatcaacctcttcctcactctcattctctctagcttcgaacacaccaccacctcctcattcctcactcagatttcatcaattcctcatcctcatgccgtaccaagtgctgatcactccctccggcgacctcgaaacagtcagccgctacgacttcgaaaccaaactcgggtccacaatgatgcacgatttcgccatcacagaaaacttagtcgtgattcccgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

145

Amino Acids

16.4

Weight (kDa)

7.1

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017463)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8059366.1_g000001 Rmu_sc0000399.1_g000028 Rmu_sc0000870.1_g000081 Rmu_sc0008242.1_g000014 Rmu_sc0008673.1_g000014 Rmu_sc0011538.1_g000005 Rmu_sc0011941.1_g000009 Rmu_sc0012461.1_g000005 Rmu_sc0014898.1_g000007 Rmu_ssc0000279.1_g000008
rosa_roxburghii	Rroxscaffold_7G00181920
rosa_samantha	Rh2CG247800 Rh2DG614400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	156
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	90
AfaI	GTAC	3 cut(s)	22, 54, 311
AfiI	CCNNNNNNNGG	2 cut(s)	49, 378
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	157, 207
ApoI	RAATTY	1 cut(s)	28
Asp718I	GGTACC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	134, 166
AsuII	TTCGAA	2 cut(s)	248, 366
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	381
BaeI	ACNNNNGTAYC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	83
BbrPI	CACGTG	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	169, 219
BccI	CCATC	3 cut(s)	137, 173, 413
BceAI	ACGGC	2 cut(s)	44, 292
BclI	TGATCA	1 cut(s)	321
BfaI	CTAG	2 cut(s)	242, 436
BisI	GCNGC	3 cut(s)	158, 208, 355
BlsI	GCNGC	3 cut(s)	159, 209, 356
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	22, 382
BmsI	GCATC	1 cut(s)	381
Bpu14I	TTCGAA	2 cut(s)	248, 366
BsaAI	YACGTR	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 378
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	49, 378
BseMII	CTCAG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	169, 219
BseYI	CCCAGC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	49, 378
BsoBI	CYCGRG	1 cut(s)	377
Bsp119I	TTCGAA	2 cut(s)	248, 366
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	22, 382
BspT104I	TTCGAA	2 cut(s)	248, 366
BspT107I	GGYRCC	1 cut(s)	20
BssMI	GATC	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	52, 71, 349
Bst6I	CTCTTC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	90
BstBI	TTCGAA	2 cut(s)	248, 366
BstDEI	CTNAG	2 cut(s)	278, 418
BstF5I	GGATG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	169, 219
BstXI	CCANNNNNNTGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	76
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	21, 53, 310
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	7 cut(s)	37, 81, 86, 160, 210, 245, 354
CviKI_1	RGCY	7 cut(s)	37, 81, 86, 160, 210, 245, 354
CviQI	GTAC	3 cut(s)	21, 53, 310
DdeI	CTNAG	2 cut(s)	278, 418
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	122
Eco72I	CACGTG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	83
FaeI	CATG	1 cut(s)	307
FaiI	YATR	2 cut(s)	66, 305
FatI	CATG	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	158, 208, 355
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	3 cut(s)	158, 208, 355
FspBI	CTAG	2 cut(s)	242, 436
FspI	TGCGCA	1 cut(s)	156
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	3 cut(s)	158, 208, 355
GsaI	CCCAGC	1 cut(s)	86
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	307
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	134, 166
Hpy166II	GTNNAC	2 cut(s)	55, 384
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	2 cut(s)	424, 431
Hpy8I	GTNNAC	2 cut(s)	55, 384
HpyAV	CCTTC	3 cut(s)	97, 149, 203
HpyCH4III	ACNGT	3 cut(s)	52, 71, 349
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	4, 394
HpyF3I	CTNAG	2 cut(s)	278, 418
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	307
HspAI	GCGC	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	321
LpnPI	CCDG	4 cut(s)	51, 96, 113, 346
Lsp1109I	GCAGC	2 cut(s)	169, 219
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	2 cut(s)	242, 436
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	2 cut(s)	181, 213
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	3 cut(s)	28, 109, 290
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	3 cut(s)	69, 302, 389
MspI	CCGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	22, 382
NsbI	TGCGCA	1 cut(s)	156
NspV	TTCGAA	2 cut(s)	248, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	159, 209, 356
PmaCI	CACGTG	1 cut(s)	90
PmlI	CACGTG	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	90
PspCI	CACGTG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	22, 382
PspPI	GGNCC	1 cut(s)	381
RsaI	GTAC	3 cut(s)	22, 54, 311
RsaNI	GTAC	3 cut(s)	21, 53, 310
RseI	CAYNNNNRTG	3 cut(s)	69, 302, 389
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	158, 208, 355
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	8 cut(s)	92, 102, 147, 174, 221, 247, 265, 342
SfaNI	GCATC	1 cut(s)	381
SfuI	TTCGAA	2 cut(s)	248, 366
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	3 cut(s)	69, 302, 389
Sse9I	AATT	3 cut(s)	28, 109, 290
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	2 cut(s)	242, 436
TaaI	ACNGT	3 cut(s)	52, 71, 349
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	3 cut(s)	248, 342, 366
TasI	AATT	3 cut(s)	28, 109, 290
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	2 cut(s)	157, 207
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	2 cut(s)	242, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.