Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000399.1

Orthogroup ID

OG0017463

Physical Location & Seq

Genomic Coordinates Reverse (-)

144118 .. 147121

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000399.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgccgtaccaagtgtggatcactccttccggtgaccttgaaacaatcggccgctacgacttcgaaactgaacttgggtccacaatgatgcatgacttctccatcaccaaaaacttcgtcataattcccaaccagtaccaacagatggtgttcaagcttcaggagatgaggtcgccggtgatctacgacaagaacaagaaatccaggttcggaattccgatggccaatagaaaacccagaccttgccgagcactgcccagcctcgcccagtcaccccgcgcctgtgcctctgtttcactacatgcttcagccagccacggtgcacgcttcgaccgtgcactctggcaggcctacgtgtcggccaacaaggccttcgtcgatagaatcatagaggttctaaacccggatgtggactacgtttggatccatgattaccatctcatggttttgcctactttcttgagcagaatgctgtgtcttcattatgagttcaaaagagggtacatgggtttggagtattatggtcgaatatttattttgttgcttgatgatactgccaaggatgtaaaggtgttgaaggaaaagtttgaggggaagattgtgattttgggggtggatgatttggacttgtttaaggggattaatttgaagtttctggcaatgaagcagcttttggaagagcatcagagtttgagggggaaggtggttatggtgcagataatgaacccgacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

244

Amino Acids

28.24

Weight (kDa)

8.99

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017463)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8059366.1_g000001 Rmu_sc0000399.1_g000028 Rmu_sc0000870.1_g000081 Rmu_sc0008242.1_g000014 Rmu_sc0008673.1_g000014 Rmu_sc0011538.1_g000005 Rmu_sc0011941.1_g000009 Rmu_sc0012461.1_g000005 Rmu_sc0014898.1_g000007 Rmu_ssc0000279.1_g000008
rosa_roxburghii	Rroxscaffold_7G00181920
rosa_samantha	Rh2CG247800 Rh2DG614400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	145, 442
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	52, 277
AclWI	GGATC	3 cut(s)	26, 418, 431
AcoI	YGGCCR	3 cut(s)	49, 222, 360
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	2 cut(s)	143, 291
AfaI	GTAC	3 cut(s)	8, 137, 503
AfiI	CCNNNNNNNGG	3 cut(s)	145, 409, 442
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	41, 154, 493, 577, 649
AjnI	CCWGG	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	6 cut(s)	57, 89, 356, 388, 656, 688
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	157, 670
AluI	AGCT	2 cut(s)	157, 670
Alw21I	GWGCWC	3 cut(s)	253, 325, 340
Alw44I	GTGCAC	2 cut(s)	321, 336
AlwI	GGATC	3 cut(s)	26, 418, 431
AoxI	GGCC	5 cut(s)	49, 222, 348, 360, 369
ApaLI	GTGCAC	2 cut(s)	321, 336
ApeKI	GCWGC	1 cut(s)	667
ApoI	RAATTY	1 cut(s)	213
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AseI	ATTAAT	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	4 cut(s)	44, 97, 190, 264
AsuII	TTCGAA	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	2 cut(s)	325, 340
BaeI	ACNNNNGTAYC	2 cut(s)	493, 526
BalI	TGGCCA	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	3 cut(s)	253, 325, 340
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	4 cut(s)	110, 139, 214, 444
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	368
BisI	GCNGC	2 cut(s)	52, 668
BlsI	GCNGC	2 cut(s)	53, 669
Bme1390I	CCNGG	2 cut(s)	205, 404
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	79, 425
BmrFI	CCNGG	2 cut(s)	205, 404
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	78, 691
BmuI	ACTGGG	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	470
Bpu14I	TTCGAA	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	481
BpuMI	CCSGG	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	316, 558
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 409, 442
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	133, 268
Bse3DI	GCAATG	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	316, 558
BseGI	GGATG	3 cut(s)	412, 568, 622
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	3 cut(s)	145, 409, 442
BseMI	GCAATG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	133, 268
BseSI	GKGCMC	2 cut(s)	325, 340
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	679
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	734
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	2 cut(s)	52, 334
BshFI	GGCC	5 cut(s)	51, 224, 350, 362, 371
BsiEI	CGRYCG	2 cut(s)	52, 334
BsiHKAI	GWGCWC	3 cut(s)	253, 325, 340
BsiSI	CCGG	3 cut(s)	30, 176, 404
BslI	CCNNNNNNNGG	3 cut(s)	145, 409, 442
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	5 cut(s)	51, 224, 350, 362, 371
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	3 cut(s)	253, 325, 340
Bsp143I	GATC	3 cut(s)	18, 180, 423
BspACI	CCGC	2 cut(s)	52, 277
BspANI	GGCC	5 cut(s)	51, 224, 350, 362, 371
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	79, 425
BspPI	GGATC	3 cut(s)	26, 418, 431
BspQI	GCTCTTC	1 cut(s)	672
BspT104I	TTCGAA	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	666
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	133, 268
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	316, 558
BssMI	GATC	3 cut(s)	18, 180, 423
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	320, 335
Bst6I	CTCTTC	1 cut(s)	672
BstBAI	YACGTR	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	313, 325, 348
BstDSI	CCRYGG	1 cut(s)	316
BstEII	GGTNACC	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	412, 568, 622
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	21, 183, 426
BstMBI	GATC	3 cut(s)	18, 180, 423
BstMCI	CGRYCG	2 cut(s)	52, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	203, 402
BstSLI	GKGCMC	2 cut(s)	325, 340
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BstZI	CGGCCG	1 cut(s)	49
BsuRI	GGCC	5 cut(s)	51, 224, 350, 362, 371
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	412, 568, 622
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	3 cut(s)	313, 325, 348
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	3 cut(s)	7, 136, 502
CviAII	CATG	6 cut(s)	92, 302, 428, 442, 505, 732
CviQI	GTAC	3 cut(s)	7, 136, 502
DpnI	GATC	3 cut(s)	20, 182, 425
DpnII	GATC	3 cut(s)	18, 180, 423
EaeI	YGGCCR	3 cut(s)	49, 222, 360
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
EclXI	CGGCCG	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	558
Eco147I	AGGCCT	2 cut(s)	350, 371
Eco47I	GGWCC	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	143, 291
Eco91I	GGTNACC	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	558
EcoT22I	ATGCAT	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	6 cut(s)	95, 305, 431, 445, 508, 735
FatI	CATG	6 cut(s)	91, 301, 427, 441, 504, 731
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	52, 668
FokI	GGATG	3 cut(s)	419, 575, 629
Fsp4HI	GCNGC	2 cut(s)	52, 668
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	2 cut(s)	52, 668
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	5 cut(s)	51, 224, 350, 362, 371
HapII	CCGG	3 cut(s)	30, 176, 404
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	6 cut(s)	95, 305, 431, 445, 508, 735
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	384
HpaII	CCGG	3 cut(s)	30, 176, 404
HphI	GGTGA	4 cut(s)	44, 97, 190, 264
Hpy166II	GTNNAC	4 cut(s)	81, 323, 338, 412
Hpy188I	TCNGA	3 cut(s)	212, 219, 687
Hpy188III	TCNNGA	2 cut(s)	161, 460
Hpy8I	GTNNAC	4 cut(s)	81, 323, 338, 412
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	4 cut(s)	36, 382, 571, 694
HpyCH4III	ACNGT	2 cut(s)	320, 335
HpyCH4IV	ACGT	2 cut(s)	354, 417
HpyCH4V	TGCA	4 cut(s)	91, 323, 338, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpySE526I	ACGT	2 cut(s)	354, 417
Hsp92II	CATG	6 cut(s)	95, 305, 431, 445, 508, 735
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	18, 180, 423
LguI	GCTCTTC	1 cut(s)	672
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	2 cut(s)	78, 691
MaeII	ACGT	2 cut(s)	354, 417
MaeIII	GTNAC	2 cut(s)	32, 270
MalI	GATC	3 cut(s)	20, 182, 425
MboI	GATC	3 cut(s)	18, 180, 423
MboII	GAAGA	3 cut(s)	470, 607, 689
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	3 cut(s)	253, 325, 340
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	3 cut(s)	123, 213, 643
MluNI	TGGCCA	1 cut(s)	224
MnlI	CCTC	7 cut(s)	162, 272, 298, 385, 491, 583, 687
Mox20I	TGGCCA	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	2 cut(s)	633, 642
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	3 cut(s)	30, 176, 404
MspR9I	CCNGG	2 cut(s)	205, 404
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	3 cut(s)	18, 180, 423
NlaIII	CATG	6 cut(s)	95, 305, 431, 445, 508, 735
NlaIV	GGNNCC	2 cut(s)	79, 425
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	2 cut(s)	32, 270
NsiI	ATGCAT	1 cut(s)	93
NspI	RCATGY	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	63
PceI	AGGCCT	2 cut(s)	350, 371
PciSI	GCTCTTC	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 331
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	384
PflMI	CCANNNNNTGG	2 cut(s)	145, 442
PkrI	GCNGC	2 cut(s)	53, 669
Ppu21I	YACGTR	1 cut(s)	355
PshBI	ATTAAT	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	203
PspEI	GGTNACC	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	79, 425
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	3 cut(s)	8, 137, 503
RsaNI	GTAC	3 cut(s)	7, 136, 502
RseI	CAYNNNNRTG	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	672
SaqAI	TTAA	2 cut(s)	633, 642
SatI	GCNGC	2 cut(s)	52, 668
Sau3AI	GATC	3 cut(s)	18, 180, 423
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	205, 404
SduI	GDGCHC	3 cut(s)	253, 325, 340
SfaNI	GCATC	2 cut(s)	78, 691
SfiI	GGCCNNNNNGGCC	1 cut(s)	368
SfuI	TTCGAA	1 cut(s)	63
SgrAI	CRCCGGYG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	3 cut(s)	123, 213, 643
SseBI	AGGCCT	2 cut(s)	350, 371
SsiI	CCGC	2 cut(s)	52, 277
SspI	AATATT	1 cut(s)	531
StuI	AGGCCT	2 cut(s)	350, 371
StyD4I	CCNGG	2 cut(s)	203, 402
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	320, 335
TaiI	ACGT	2 cut(s)	357, 420
TaqI	TCGA	4 cut(s)	63, 330, 378, 526
TasI	AATT	3 cut(s)	123, 213, 643
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	633, 642
Tru9I	TTAA	2 cut(s)	633, 642
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	32, 270
TseI	GCWGC	1 cut(s)	667
Tsp45I	GTSAC	2 cut(s)	32, 270
TspDTI	ATGAA	2 cut(s)	470, 677
TspRI	CASTG	1 cut(s)	258
Van91I	CCANNNNNTGG	2 cut(s)	145, 442
VneI	GTGCAC	2 cut(s)	321, 336
VpaK11BI	GGWCC	1 cut(s)	78
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.