Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000279.1

Orthogroup ID

OG0017463

Physical Location & Seq

Genomic Coordinates Reverse (-)

37970 .. 41015

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000279.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgccgtaccaagtgcggatcactccctctggcgacctcgaaacagtcggcctctacgacttcgaaaccaaactcgggtccacaatgatgcacgacttcgctatcatcgaaaacctcgtcgtgattcccgaccagcaggtggtgttcaagcttcaggagatgatcaccgcaacatccttgctggagccattaatgcaaccatcgcccaagacgcttgtcgccgccctgaagcctaggttcgcaaagccacctacacctccaatcagacagcggccagccataccaagtcatgactgtccctgtccacctgtcaatgtcatcgaccaactcaaatcatctatggcaagaaagttggccaggagactttcttgccacatatggtcctacatcaccgcagtcacctcctgcaaatggccaccaccaatccttggacccgaagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

147

Amino Acids

16.37

Weight (kDa)

8.75

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017463)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8059366.1_g000001 Rmu_sc0000399.1_g000028 Rmu_sc0000870.1_g000081 Rmu_sc0008242.1_g000014 Rmu_sc0008673.1_g000014 Rmu_sc0011538.1_g000005 Rmu_sc0011941.1_g000009 Rmu_sc0012461.1_g000005 Rmu_sc0014898.1_g000007 Rmu_ssc0000279.1_g000008
rosa_roxburghii	Rroxscaffold_7G00181920
rosa_samantha	Rh2CG247800 Rh2DG614400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
AccB7I	CCANNNNNTGG	2 cut(s)	139, 428
AciI	CCGC	5 cut(s)	16, 168, 222, 271, 393
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	3 cut(s)	272, 354, 413
AcuI	CTGAAG	2 cut(s)	137, 248
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	4 cut(s)	75, 139, 411, 428
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	4 cut(s)	49, 272, 354, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AseI	ATTAAT	1 cut(s)	191
AspA2I	CCTAGG	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	78, 381, 431
AsuHPI	GGTGA	3 cut(s)	157, 382, 391
AsuII	TTCGAA	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	3 cut(s)	78, 381, 431
AvrII	CCTAGG	1 cut(s)	233
BalI	TGGCCA	2 cut(s)	356, 415
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	358
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	222, 272
BlnI	CCTAGG	1 cut(s)	233
BlsI	GCNGC	2 cut(s)	223, 273
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	3 cut(s)	78, 381, 431
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	3 cut(s)	78, 381, 431
BmiI	GGNNCC	3 cut(s)	79, 186, 433
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	78
BoxI	GACNNNNGTC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	233, 427
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 139, 411, 428
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	233, 427
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	4 cut(s)	75, 139, 411, 428
BshFI	GGCC	4 cut(s)	51, 274, 356, 415
BsiHKCI	CYCGRG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	4 cut(s)	75, 139, 411, 428
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	51, 274, 356, 415
BsoBI	CYCGRG	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	18, 162
BspACI	CCGC	5 cut(s)	16, 168, 222, 271, 393
BspANI	GGCC	4 cut(s)	51, 274, 356, 415
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	79, 186, 433
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	233, 427
BssMI	GATC	2 cut(s)	18, 162
BssT1I	CCWWGG	2 cut(s)	233, 427
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	46, 296
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	173
BstKTI	GATC	2 cut(s)	21, 165
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	18, 162
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 202, 211
BstNI	CCWGG	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	356
BsuRI	GGCC	4 cut(s)	51, 274, 356, 415
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	3 cut(s)	78, 381, 431
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	290
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	2 cut(s)	20, 164
DpnII	GATC	2 cut(s)	18, 162
EaeI	YGGCCR	3 cut(s)	272, 354, 413
Eco130I	CCWWGG	2 cut(s)	233, 427
Eco47I	GGWCC	3 cut(s)	78, 381, 431
Eco57I	CTGAAG	2 cut(s)	137, 248
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	233, 427
ErhI	CCWWGG	2 cut(s)	233, 427
FaeI	CATG	1 cut(s)	293
FaiI	YATR	5 cut(s)	281, 291, 341, 377, 379
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	289
FauNDI	CATATG	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	222, 272
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	222, 272
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	222, 272
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	51, 274, 356, 415
HgaI	GACGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	293
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	3 cut(s)	157, 382, 391
Hpy166II	GTNNAC	2 cut(s)	81, 305
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	4 cut(s)	121, 128, 155, 290
Hpy8I	GTNNAC	2 cut(s)	81, 305
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	46, 296
HpyCH4V	TGCA	3 cut(s)	91, 196, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 202, 211
Hsp92II	CATG	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	18, 162
LmnI	GCTCC	1 cut(s)	184
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	20, 164
MboI	GATC	2 cut(s)	18, 162
MlsI	TGGCCA	2 cut(s)	356, 415
MluNI	TGGCCA	2 cut(s)	356, 415
MnlI	CCTC	6 cut(s)	37, 47, 62, 125, 267, 412
Mox20I	TGGCCA	2 cut(s)	356, 415
MscI	TGGCCA	2 cut(s)	356, 415
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	2 cut(s)	356, 415
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	193, 202, 211
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	2 cut(s)	18, 162
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	3 cut(s)	79, 186, 433
NmuCI	GTSAC	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	63
PagI	TCATGA	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	4 cut(s)	54, 105, 114, 126
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	2 cut(s)	139, 428
PkrI	GCNGC	2 cut(s)	223, 273
PshAI	GACNNNNGTC	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	79, 186, 433
PspPI	GGNCC	3 cut(s)	78, 381, 431
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	2 cut(s)	222, 272
Sau3AI	GATC	2 cut(s)	18, 162
Sau96I	GGNCC	3 cut(s)	78, 381, 431
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	9 cut(s)	39, 117, 141, 153, 239, 253, 259, 310, 404
SfaNI	GCATC	1 cut(s)	78
SfuI	TTCGAA	1 cut(s)	63
SinI	GGWCC	3 cut(s)	78, 381, 431
SmiMI	CAYNNNNRTG	1 cut(s)	86
SsiI	CCGC	5 cut(s)	16, 168, 222, 271, 393
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	233, 427
TaaI	ACNGT	2 cut(s)	46, 296
TaqI	TCGA	4 cut(s)	39, 63, 108, 321
TauI	GCSGC	2 cut(s)	224, 274
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	397
Van91I	CCANNNNNTGG	2 cut(s)	139, 428
VpaK11BI	GGWCC	3 cut(s)	78, 381, 431
VspI	ATTAAT	1 cut(s)	191
XmaJI	CCTAGG	1 cut(s)	233
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.