Rmu_co8126742.1_g000001

Protein MODIFIER OF SNC1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8126742.1
OG0003588
Physical Location & Seq
Forward (+)
1 .. 622
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8126742.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
gcattgagtactgagtcaagcctgactgcaaattctagtgctatacttgagtcatcttctcatccaagaaagaaaaataacagaagtggcaagaacaagcagagagcagagaattcatcatctgtggctgctatatcatcatctatatcaaatgatacaaatcatgcaaacaccactatagaaactggaaaaccaaatgtacctaatgtggatttagatcctagctcagttcagtcacagaccttttctagggatgcatatcagtcgatggagcagcacttgtctctaccaaacgaagaatctcaaggtagattaagtggccagtggaaacctcagcattctcgccggatgcctaggaattcacaagcaatcaggcactcggaaaaatttcaaagcagcgatgctgttatgtgggcaccagtgcggtcacagaacaaaactgatgtaactgatgatgccatccccaaaaccgaagctgaggctgtcagtgctctaaagaaatggcacatcaaggaagcactcaacaagcaatggtttctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAT2_N

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

9.43

Isoelectric Point (pI)

68.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 415
AciI CCGC 1 cut(s) 424
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 4 cut(s) 31, 112, 358, 386
AfaI GTAC 2 cut(s) 10, 201
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 1 cut(s) 392
AluBI AGCT 2 cut(s) 225, 476
AluI AGCT 2 cut(s) 225, 476
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 3 cut(s) 128, 274, 396
ApoI RAATTY 4 cut(s) 31, 112, 358, 386
Asp700I GAANNNNTTC 1 cut(s) 387
AspA2I CCTAGG 1 cut(s) 353
AvrII CCTAGG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 493
BbvCI CCTCAGC 2 cut(s) 333, 477
BbvI GCAGC 3 cut(s) 115, 286, 408
BccI CCATC 2 cut(s) 262, 467
BcgI CGANNNNNNTGC 2 cut(s) 246, 280
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 4 cut(s) 36, 222, 249, 354
BfmI CTRYAG 2 cut(s) 177, 539
BisI GCNGC 3 cut(s) 129, 275, 397
BlnI CCTAGG 1 cut(s) 353
BlsI GCNGC 3 cut(s) 130, 276, 398
BmcAI AGTACT 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 4 cut(s) 244, 339, 391, 445
Bpu10I CCTNAGC 2 cut(s) 333, 477
BpuEI CTTGAG 2 cut(s) 68, 288
BsaBI GATNNNNATC 3 cut(s) 159, 216, 258
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 3 cut(s) 190, 322, 419
Bse3DI GCAATG 1 cut(s) 536
Bse8I GATNNNNATC 3 cut(s) 159, 216, 258
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 4 cut(s) 61, 259, 354, 459
BseJI GATNNNNATC 3 cut(s) 159, 216, 258
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 3 cut(s) 240, 347, 468
BseNI ACTGG 3 cut(s) 190, 322, 419
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 3 cut(s) 115, 286, 408
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 418, 493
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 424
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 4 cut(s) 4, 239, 346, 469
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 536
BsrI ACTGG 3 cut(s) 190, 322, 419
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 353
BstDEI CTNAG 4 cut(s) 12, 226, 333, 477
BstENI CCTNNNNNAGG 1 cut(s) 247
BstF5I GGATG 4 cut(s) 61, 259, 354, 459
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstSFI CTRYAG 2 cut(s) 177, 539
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 3 cut(s) 115, 286, 408
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 4 cut(s) 61, 259, 354, 459
BtsIMutI CAGTG 3 cut(s) 329, 426, 493
Csp6I GTAC 2 cut(s) 9, 200
CviAII CATG 1 cut(s) 164
CviJI RGCY 6 cut(s) 21, 128, 225, 321, 476, 482
CviKI_1 RGCY 6 cut(s) 21, 128, 225, 321, 476, 482
CviQI GTAC 2 cut(s) 9, 200
DdeI CTNAG 4 cut(s) 12, 226, 333, 477
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 353
EcoNI CCTNNNNNAGG 1 cut(s) 247
EcoRI GAATTC 2 cut(s) 112, 358
EcoT14I CCWWGG 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 1 cut(s) 167
FaiI YATR 7 cut(s) 44, 134, 146, 165, 179, 259, 410
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 129, 275, 397
FokI GGATG 4 cut(s) 48, 266, 361, 446
Fsp4HI GCNGC 3 cut(s) 129, 275, 397
FspBI CTAG 4 cut(s) 36, 222, 249, 354
GluI GCNGC 3 cut(s) 129, 275, 397
HaeIII GGCC 1 cut(s) 321
HapII CCGG 1 cut(s) 346
Hin1II CATG 1 cut(s) 167
HinfI GANTC 3 cut(s) 14, 50, 299
HpaII CCGG 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 29, 167, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 4 cut(s) 12, 226, 333, 477
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 35, 171, 335, 358, 359, 432
Lsp1109I GCAGC 3 cut(s) 115, 286, 408
LweI GCATC 4 cut(s) 244, 339, 391, 445
MaeI CTAG 4 cut(s) 36, 222, 249, 354
MaeIII GTNAC 3 cut(s) 234, 426, 445
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 48, 308
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 418, 493
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 4 cut(s) 31, 112, 358, 386
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 2 cut(s) 23, 59
MnlI CCTC 2 cut(s) 342, 472
Mox20I TGGCCA 1 cut(s) 321
Mph1103I ATGCAT 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 321
MseI TTAA 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 1 cut(s) 346
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 488
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 234, 426
NsiI ATGCAT 1 cut(s) 259
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 3 cut(s) 130, 276, 398
PleI GAGTC 2 cut(s) 22, 58
PpsI GAGTC 2 cut(s) 22, 58
PspN4I GGNNCC 1 cut(s) 417
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 2 cut(s) 10, 201
RsaNI GTAC 2 cut(s) 9, 200
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 3 cut(s) 129, 275, 397
Sau3AI GATC 1 cut(s) 217
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 2 cut(s) 23, 59
SduI GDGCHC 2 cut(s) 418, 493
SetI ASST 6 cut(s) 205, 227, 245, 310, 334, 478
SfaNI GCATC 4 cut(s) 244, 339, 391, 445
SfcI CTRYAG 2 cut(s) 177, 539
SmlI CTYRAG 2 cut(s) 47, 303
SmoI CTYRAG 2 cut(s) 47, 303
Sse9I AATT 4 cut(s) 31, 112, 358, 386
SsiI CCGC 1 cut(s) 424
SspMI CTAG 4 cut(s) 36, 222, 249, 354
StyI CCWWGG 1 cut(s) 353
TaqI TCGA 1 cut(s) 266
TasI AATT 4 cut(s) 31, 112, 358, 386
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 3 cut(s) 329, 426, 493
TseFI GTSAC 2 cut(s) 234, 426
TseI GCWGC 3 cut(s) 128, 274, 396
Tsp45I GTSAC 2 cut(s) 234, 426
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 3 cut(s) 329, 426, 493
XagI CCTNNNNNAGG 1 cut(s) 247
XapI RAATTY 4 cut(s) 31, 112, 358, 386
XmaJI CCTAGG 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 4 cut(s) 36, 222, 249, 354
ZrmI AGTACT 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.