Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314567.1

Orthogroup ID

OG0003588

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 929

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314567.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 929 bp

tctgtaaatgcaagtgtgaagagtggaactggtaattcatggaaaagagagaatccctcatacaatgaagatggaggtagacctggtatggagaagtggcagggaaatccccagccttaccctggtgctagtgtcccgccccaacattatgatgcatggcatggtggtcctgttcacccgcaaggtggtccagtacctcacccccaaggtggggtttggtttagaggtcctccagggggtcctccttttggagcccaggtccctcctggtggcttcccaatggaaccatttccatattatcctccacaaattccagctgctgctcttgccaacccacagcctgttcctccaactggagcaggaccaaggggacaccatcctaaaaatggagagatgtacagacctcatatgccagaggcatatatccgccccggtatgccaattagacctggattttaccctggtcctgtggcctttgagggatattatggttcaccaatgggatattgcaattcaaatgaacgagatgtcccatttgtgggaatgccagctggtcctcccgtctataacaggtaccctagccaaagtgctcctgagcctggcagacctagtggatatggtcccaccagccaaacagggttaccggagaaaatagcatctggtcatccacatgatacacgtggaccatacaaagttcttctgaagcagcatgatggttgggatagaagaaatgaagaacagagaagtgaggttgctgtaacaaccaatgcgtcatgtcttgagagtgaggaccaaccaagagcattgtcattggagaatgattggagatcagatcgcagaaaggagggagagagggatcgaaggagtgaaagacctgcttcgcagaattctgaccgaggagcttcttctgctcgtgtcaaagtcaaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAT2_N

Protein Analysis

310

Amino Acids

33.73

Weight (kDa)

8.95

Isoelectric Point (pI)

66.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24680 AT4G24680 AT4G24680 AT4G24680 AT4G24680
fragaria_vesca	FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640
malus_domestica	MD06G1170800.v1.1 MD14G1176500.v1.1
prunus_persica	Prupe.5G170400_v2.0.a1
pyrus_communis	pycom06g15230 pycom14g14740
rosa_chinensis	RchiOBHm_Chr7g0193171
rosa_laevigata	RLG00000004290
rosa_multiflora	Rmu_co8126742.1_g000001 Rmu_co8232691.1_g000001 Rmu_co8314567.1_g000001 Rmu_sc0018042.1_g000001 Rmu_ssc0000092.1_g000034
rosa_roxburghii	Rroxscaffold_3G00262320
rosa_rugosa	Rorug07G0008100
rosa_samantha	Rh7AG133300 Rh7BG134400 Rh7CG137200 Rh7DG135300
rosa_wichuraiana	Rw7G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	883
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	573
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	3 cut(s)	137, 179, 427
AclWI	GGATC	1 cut(s)	864
AcsI	RAATTY	2 cut(s)	309, 886
AcuI	CTGAAG	1 cut(s)	722
AcvI	CACGTG	1 cut(s)	680
AfaI	GTAC	3 cut(s)	195, 398, 575
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	1 cut(s)	516
AjnI	CCWGG	8 cut(s)	82, 121, 232, 255, 265, 448, 460, 598
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	3 cut(s)	317, 551, 902
AluI	AGCT	3 cut(s)	317, 551, 902
Alw21I	GWGCWC	1 cut(s)	592
AlwI	GGATC	1 cut(s)	864
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	3 cut(s)	317, 320, 706
ApoI	RAATTY	2 cut(s)	309, 886
Asp700I	GAANNNNTTC	1 cut(s)	288
Asp718I	GGTACC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	3 cut(s)	167, 191, 486
BanI	GGYRCC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	912
BbrPI	CACGTG	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	3 cut(s)	304, 307, 718
BccI	CCATC	3 cut(s)	65, 384, 707
BciT130I	CCWGG	8 cut(s)	84, 123, 234, 257, 267, 450, 462, 600
BcnI	CCSGG	1 cut(s)	432
BfaI	CTAG	3 cut(s)	129, 579, 609
BfuAI	ACCTGC	1 cut(s)	883
BisI	GCNGC	3 cut(s)	318, 321, 707
BlsI	GCNGC	3 cut(s)	319, 322, 708
Bme1390I	CCNGG	9 cut(s)	84, 123, 234, 257, 267, 432, 450, 462, 600
BmiI	GGNNCC	6 cut(s)	240, 253, 261, 285, 575, 622
BmrFI	CCNGG	9 cut(s)	84, 123, 234, 257, 267, 432, 450, 462, 600
BmsI	GCATC	2 cut(s)	142, 665
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	2 cut(s)	216, 375
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	680
BsaJI	CCNNGG	8 cut(s)	121, 205, 233, 255, 365, 430, 460, 895
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bse1I	ACTGG	3 cut(s)	34, 191, 358
BseBI	CCWGG	8 cut(s)	84, 123, 234, 257, 267, 450, 462, 600
BseDI	CCNNGG	8 cut(s)	121, 205, 233, 255, 365, 430, 460, 895
BseGI	GGATG	2 cut(s)	376, 664
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	3 cut(s)	34, 191, 358
BseRI	GAGGAG	1 cut(s)	912
BseXI	GCAGC	3 cut(s)	304, 307, 718
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	2 cut(s)	432, 644
BslFI	GGGAC	5 cut(s)	119, 245, 384, 515, 606
BsmFI	GGGAC	5 cut(s)	119, 245, 384, 515, 606
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	256, 592
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	827, 832, 856
BspACI	CCGC	3 cut(s)	137, 179, 427
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	6 cut(s)	240, 253, 261, 285, 575, 622
BspMI	ACCTGC	1 cut(s)	883
BspPI	GGATC	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	573
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	34, 191, 358
BssECI	CCNNGG	8 cut(s)	121, 205, 233, 255, 365, 430, 460, 895
BssMI	GATC	3 cut(s)	827, 832, 856
BssSI	CACGAG	1 cut(s)	912
BssT1I	CCWWGG	2 cut(s)	205, 365
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	8 cut(s)	84, 123, 234, 257, 267, 450, 462, 600
Bst6I	CTCTTC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	594
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	376, 664
BstKTI	GATC	3 cut(s)	830, 835, 859
BstMBI	GATC	3 cut(s)	827, 832, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 908
BstNI	CCWGG	8 cut(s)	84, 123, 234, 257, 267, 450, 462, 600
BstPI	GGTNACC	1 cut(s)	639
BstSCI	CCNGG	9 cut(s)	82, 121, 232, 255, 265, 430, 448, 460, 598
BstV1I	GCAGC	3 cut(s)	304, 307, 718
BsuRI	GGCC	1 cut(s)	473
BtsCI	GGATG	2 cut(s)	376, 664
BveI	ACCTGC	1 cut(s)	883
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	320
CseI	GACGC	1 cut(s)	759
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	194, 397, 574
CviAII	CATG	6 cut(s)	39, 156, 161, 671, 710, 774
CviQI	GTAC	3 cut(s)	194, 397, 574
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	3 cut(s)	829, 834, 858
DpnII	GATC	3 cut(s)	827, 832, 856
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	205, 365
Eco24I	GRGCYC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	722
Eco72I	CACGTG	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	639
EcoO109I	RGGNCCY	3 cut(s)	227, 239, 259
EcoO65I	GGTNACC	1 cut(s)	639
EcoRI	GAATTC	1 cut(s)	886
EcoRII	CCWGG	8 cut(s)	82, 121, 232, 255, 265, 448, 460, 598
EcoT14I	CCWWGG	2 cut(s)	205, 365
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	205, 365
FaeI	CATG	6 cut(s)	42, 159, 164, 674, 713, 777
FalI	AAGNNNNNCTT	2 cut(s)	862, 894
FaqI	GGGAC	5 cut(s)	119, 245, 384, 515, 606
FatI	CATG	6 cut(s)	38, 155, 160, 670, 709, 773
FauI	CCCGC	2 cut(s)	144, 186
FauNDI	CATATG	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	318, 321, 707
FokI	GGATG	2 cut(s)	363, 651
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	3 cut(s)	318, 321, 707
FspBI	CTAG	3 cut(s)	129, 579, 609
GluI	GCNGC	3 cut(s)	318, 321, 707
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	2 cut(s)	216, 375
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	2 cut(s)	432, 644
HgaI	GACGC	1 cut(s)	759
Hin1II	CATG	6 cut(s)	42, 159, 164, 674, 713, 777
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	432, 644
HphI	GGTGA	3 cut(s)	167, 191, 486
Hpy166II	GTNNAC	4 cut(s)	80, 175, 494, 683
Hpy188I	TCNGA	3 cut(s)	702, 832, 892
Hpy188III	TCNNGA	2 cut(s)	593, 779
Hpy8I	GTNNAC	4 cut(s)	80, 175, 494, 683
HpyAV	CCTTC	1 cut(s)	855
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	3 cut(s)	11, 155, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 908
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	1 cut(s)	679
Hsp92II	CATG	6 cut(s)	42, 159, 164, 674, 713, 777
KpnI	GGTACC	1 cut(s)	577
Kzo9I	GATC	3 cut(s)	827, 832, 856
LmnI	GCTCC	4 cut(s)	251, 356, 595, 899
Lsp1109I	GCAGC	3 cut(s)	304, 307, 718
LweI	GCATC	2 cut(s)	142, 665
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	3 cut(s)	129, 579, 609
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	2 cut(s)	639, 757
MalI	GATC	3 cut(s)	829, 834, 858
MboI	GATC	3 cut(s)	827, 832, 856
MboII	GAAGA	6 cut(s)	31, 80, 689, 738, 746, 897
MhlI	GDGCHC	2 cut(s)	256, 592
MluCI	AATT	5 cut(s)	34, 309, 441, 511, 886
MmeI	TCCRAC	1 cut(s)	374
Mph1103I	ATGCAT	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	288
MslI	CAYNNNNRTG	2 cut(s)	150, 669
MspA1I	CMGCKG	2 cut(s)	317, 551
MspI	CCGG	2 cut(s)	432, 644
MspR9I	CCNGG	9 cut(s)	84, 123, 234, 257, 267, 432, 450, 462, 600
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	8 cut(s)	84, 123, 234, 257, 267, 450, 462, 600
MwoI	GCNNNNNNNGC	2 cut(s)	326, 908
NciI	CCSGG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	3 cut(s)	827, 832, 856
NlaIII	CATG	6 cut(s)	42, 159, 164, 674, 713, 777
NlaIV	GGNNCC	6 cut(s)	240, 253, 261, 285, 575, 622
NsiI	ATGCAT	1 cut(s)	157
PctI	GAATGC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	319, 322, 708
PmaCI	CACGTG	1 cut(s)	680
PmlI	CACGTG	1 cut(s)	680
Ppu21I	YACGTR	1 cut(s)	680
PpuMI	RGGWCCY	3 cut(s)	227, 239, 259
Psp5II	RGGWCCY	3 cut(s)	227, 239, 259
Psp6I	CCWGG	8 cut(s)	82, 121, 232, 255, 265, 448, 460, 598
PspCI	CACGTG	1 cut(s)	680
PspEI	GGTNACC	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	8 cut(s)	82, 121, 232, 255, 265, 448, 460, 598
PspN4I	GGNNCC	6 cut(s)	240, 253, 261, 285, 575, 622
PspPPI	RGGWCCY	3 cut(s)	227, 239, 259
PstNI	CAGNNNCTG	1 cut(s)	320
PvuII	CAGCTG	2 cut(s)	317, 551
RsaI	GTAC	3 cut(s)	195, 398, 575
RsaNI	GTAC	3 cut(s)	194, 397, 574
RseI	CAYNNNNRTG	2 cut(s)	150, 669
SatI	GCNGC	3 cut(s)	318, 321, 707
Sau3AI	GATC	3 cut(s)	827, 832, 856
ScrFI	CCNGG	9 cut(s)	84, 123, 234, 257, 267, 432, 450, 462, 600
SduI	GDGCHC	2 cut(s)	256, 592
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	142, 665
SmiMI	CAYNNNNRTG	2 cut(s)	150, 669
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	5 cut(s)	34, 309, 441, 511, 886
SsiI	CCGC	3 cut(s)	137, 179, 427
SspMI	CTAG	3 cut(s)	129, 579, 609
StyD4I	CCNGG	9 cut(s)	82, 121, 232, 255, 265, 430, 448, 460, 598
StyI	CCWWGG	2 cut(s)	205, 365
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	1 cut(s)	859
TaqII	GACCGA	1 cut(s)	909
TasI	AATT	5 cut(s)	34, 309, 441, 511, 886
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	52
TseI	GCWGC	3 cut(s)	317, 320, 706
TspDTI	ATGAA	4 cut(s)	27, 81, 534, 747
XapI	RAATTY	2 cut(s)	309, 886
XcmI	CCANNNNNNNNNTGG	3 cut(s)	119, 263, 383
XmiI	GTMKAC	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	3 cut(s)	129, 579, 609
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.