Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232691.1

Orthogroup ID

OG0003588

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 690

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232691.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 610 bp

atgtttgatccaaatgattctgaggcacagcgtgctaagatgaaggagctagccaagcaacgtaccaaacagcttcaggaggaagaggaggagcggacaagaaggcagatggcgaaggctcgagcaaaattagaagagttgaacagacgtactcaagtggtggacggttcaaatcaaaagtttgaaaattcctccagtggtgatgtccagagtaaacaagaagaatctcaaacttctggtgaaccattagtggccggtaggaaatatgatccacaagtcccagctttcggttctaacctcaatgctgttgaacagattaaagagtgcatcagtgttgaagttgcagaatcaactgttccatcaattgagctaccttcggagaggccaaagagtgcctacaaggaggagcccattttcatgcatgatcaacctgtgcctttgcagcagcaggttactattgctaatactgctcatcacaacactgcttcccaggctcatgatagcagtatctcaaggcagaagcaggcacctaaacaaaagcagaacactcggttggaaaagaagtctattgggaagaatacttccactagtatgactgacacaccaaata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAT2_N

Protein Analysis

203

Amino Acids

22.82

Weight (kDa)

6.93

Isoelectric Point (pI)

74.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24680 AT4G24680 AT4G24680 AT4G24680 AT4G24680
fragaria_vesca	FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640 FvH4_5g05640
malus_domestica	MD06G1170800.v1.1 MD14G1176500.v1.1
prunus_persica	Prupe.5G170400_v2.0.a1
pyrus_communis	pycom06g15230 pycom14g14740
rosa_chinensis	RchiOBHm_Chr7g0193171
rosa_laevigata	RLG00000004290
rosa_multiflora	Rmu_co8126742.1_g000001 Rmu_co8232691.1_g000001 Rmu_co8314567.1_g000001 Rmu_sc0018042.1_g000001 Rmu_ssc0000092.1_g000034
rosa_roxburghii	Rroxscaffold_3G00262320
rosa_rugosa	Rorug07G0008100
rosa_samantha	Rh7AG133300 Rh7BG134400 Rh7CG137200 Rh7DG135300
rosa_wichuraiana	Rw7G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccB1I	GGYRCC	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	94
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	2 cut(s)	2, 263
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	32
AfaI	GTAC	2 cut(s)	64, 151
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	5 cut(s)	142, 171, 185, 311, 338
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	489
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	4 cut(s)	49, 73, 284, 370
AluI	AGCT	4 cut(s)	49, 73, 284, 370
AlwI	GGATC	2 cut(s)	2, 263
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	252, 383
ApeKI	GCWGC	2 cut(s)	442, 445
ApoI	RAATTY	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	212, 251
AsuNHI	GCTAGC	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	454, 457
BccI	CCATC	2 cut(s)	103, 367
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	491
BclI	TGATCA	1 cut(s)	424
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	2 cut(s)	50, 588
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	2 cut(s)	443, 446
BlsI	GCNGC	2 cut(s)	444, 447
Bme1390I	CCNGG	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	408, 528
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	336
BmtI	GCTAGC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	138, 496
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	3 cut(s)	101, 104, 419
BseXI	GCAGC	2 cut(s)	454, 457
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	254, 385
BshNI	GGYRCC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	254, 385
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	7, 268, 424
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	2 cut(s)	254, 385
BspCNI	CTCAG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	408, 528
BspMI	ACCTGC	1 cut(s)	439
BspOI	GCTAGC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	2, 263
BspT107I	GGYRCC	1 cut(s)	526
BsrBI	CCGCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	3 cut(s)	7, 268, 424
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	167, 355
Bst6I	CTCTTC	2 cut(s)	78, 129
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	33, 51, 525
BstDEI	CTNAG	2 cut(s)	21, 36
BstKTI	GATC	3 cut(s)	10, 271, 427
BstMBI	GATC	3 cut(s)	7, 268, 424
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 55, 442, 467, 491
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	454, 457
BsuRI	GGCC	2 cut(s)	254, 385
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	202, 337, 480
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	33, 51, 525
CciI	TCATGA	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	63, 150
CviAII	CATG	3 cut(s)	418, 422, 497
CviQI	GTAC	2 cut(s)	63, 150
DdeI	CTNAG	2 cut(s)	21, 36
DpnI	GATC	3 cut(s)	9, 270, 426
DpnII	GATC	3 cut(s)	7, 268, 424
DraIII	CACNNNGTG	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	78, 129
EarI	CTCTTC	2 cut(s)	78, 129
Eco24I	GRGCYC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	3 cut(s)	421, 425, 500
FaiI	YATR	5 cut(s)	267, 419, 423, 498, 593
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	3 cut(s)	417, 421, 496
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	443, 446
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	2 cut(s)	443, 446
FspBI	CTAG	2 cut(s)	50, 588
GluI	GCNGC	2 cut(s)	443, 446
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	254, 385
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	3 cut(s)	421, 425, 500
HinfI	GANTC	3 cut(s)	17, 224, 347
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	2 cut(s)	212, 251
Hpy166II	GTNNAC	3 cut(s)	163, 215, 242
Hpy188I	TCNGA	2 cut(s)	22, 379
Hpy188III	TCNNGA	3 cut(s)	77, 208, 497
Hpy8I	GTNNAC	3 cut(s)	163, 215, 242
HpyAV	CCTTC	4 cut(s)	37, 96, 109, 384
HpyCH4III	ACNGT	2 cut(s)	167, 355
HpyCH4IV	ACGT	2 cut(s)	61, 148
HpyCH4V	TGCA	4 cut(s)	327, 344, 421, 442
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 55, 442, 467, 491
HpyF3I	CTNAG	2 cut(s)	21, 36
HpySE526I	ACGT	2 cut(s)	61, 148
Hsp92II	CATG	3 cut(s)	421, 425, 500
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	7, 268, 424
LmnI	GCTCC	3 cut(s)	46, 91, 406
Lsp1109I	GCAGC	2 cut(s)	454, 457
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	2 cut(s)	50, 588
MaeII	ACGT	2 cut(s)	61, 148
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	3 cut(s)	9, 270, 426
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	3 cut(s)	7, 268, 424
MboII	GAAGA	4 cut(s)	95, 146, 233, 586
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	128, 187, 363
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	8 cut(s)	16, 73, 79, 82, 202, 308, 375, 397
Mph1103I	ATGCAT	1 cut(s)	423
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	416, 590
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	491
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	5 cut(s)	32, 55, 442, 467, 491
NdeII	GATC	3 cut(s)	7, 268, 424
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	3 cut(s)	421, 425, 500
NlaIV	GGNNCC	2 cut(s)	408, 528
NsiI	ATGCAT	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	120
PagI	TCATGA	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	17, 224, 347
PkrI	GCNGC	2 cut(s)	444, 447
Psp6I	CCWGG	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	408, 528
PspXI	VCTCGAGB	1 cut(s)	120
RsaI	GTAC	2 cut(s)	64, 151
RsaNI	GTAC	2 cut(s)	63, 150
RseI	CAYNNNNRTG	2 cut(s)	416, 590
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	443, 446
Sau3AI	GATC	3 cut(s)	7, 268, 424
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	416, 590
SmlI	CTYRAG	3 cut(s)	120, 153, 511
SmoI	CTYRAG	3 cut(s)	120, 153, 511
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	3 cut(s)	128, 187, 363
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	50, 588
StyD4I	CCNGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	167, 355
TaiI	ACGT	2 cut(s)	64, 151
TaqI	TCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	128, 187, 363
TfiI	GAWTC	3 cut(s)	17, 224, 347
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	202, 337, 487
TseI	GCWGC	2 cut(s)	442, 445
TspDTI	ATGAA	2 cut(s)	56, 406
TspRI	CASTG	3 cut(s)	202, 337, 487
XapI	RAATTY	1 cut(s)	187
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	2 cut(s)	50, 588
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.