Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8169364.1

Orthogroup ID

OG0018813

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 671

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8169364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 671 bp

gagtcctccctcatcgtcaccaacatcaccattgactgatctcattgttactgacataagccttgacaacgctgagttgcgtatcttgtcctctgtataccaagactgcggcgaccgcaaagagaccctgaaccagtggcttcggctgccctctccttttgcattttccaccaaaaacatcttctttgccgtcggctgtgccacttttgcaaaatatcgaggttaccaatatcgtccctccggcaggatcctgggcccagatgatgatcaagcctacaacaaaagcggctttgccgtaacccaatgtgatgatagttttggcaccacttgctctggcaatggctgttcccaatcttcaatcccgagtggactgcaaaatttcactgttgagtctttgttaagcatcagcataaatggctatatccctaatcagggaaagtggtacagtccatacttagggtgcaactacggcttccttgcggaagaaggcaacttctcattctcccccaatataagttttgcccaactccaaaagtacagaaggctgctggtcccaaccacaacggtggttaattggcaaattggggatgagccgtgtgaagaagctcaaaagagcaagggaagttatgcttgcaagggaaatagcacgtgcgtcaattggtccaatgtca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

223

Amino Acids

24.47

Weight (kDa)

5.18

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018813)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10620
rosa_chinensis	RchiOBHm_Chr5g0017331
rosa_laevigata	RLG00000032274
rosa_multiflora	Rmu_co8169364.1_g000001 Rmu_sc0005223.1_g000006 Rmu_sc0005223.1_g000026 Rmu_sc0005319.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060030
rosa_rugosa	Rorug05G0034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	4 cut(s)	109, 116, 286, 480
AclWI	GGATC	2 cut(s)	242, 255
AcsI	RAATTY	1 cut(s)	377
AcvI	CACGTG	1 cut(s)	649
AfaI	GTAC	2 cut(s)	444, 537
AfiI	CCNNNNNNNGG	4 cut(s)	244, 431, 432, 456
AgsI	TTSAA	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	1 cut(s)	606
AluI	AGCT	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	242, 255
Ama87I	CYCGRG	1 cut(s)	362
AoxI	GGCC	1 cut(s)	254
ApaI	GGGCCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	146, 545
ApoI	RAATTY	1 cut(s)	377
AspS9I	GGNCC	4 cut(s)	254, 255, 551, 661
AsuHPI	GGTGA	2 cut(s)	10, 19
AvaI	CYCGRG	1 cut(s)	362
AvaII	GGWCC	2 cut(s)	551, 661
BaeGI	GKGCMC	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	133, 532
BceAI	ACGGC	4 cut(s)	174, 279, 485, 578
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	117
BisI	GCNGC	4 cut(s)	110, 147, 287, 546
BlsI	GCNGC	4 cut(s)	111, 148, 288, 547
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	551, 661
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	4 cut(s)	254, 255, 551, 661
BmiI	GGNNCC	4 cut(s)	249, 256, 323, 553
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	412
BsaAI	YACGTR	1 cut(s)	649
BsaBI	GATNNNNATC	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 431, 432, 456
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	593
BseJI	GATNNNNATC	1 cut(s)	265
BseLI	CCNNNNNNNGG	4 cut(s)	244, 431, 432, 456
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	133, 532
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	2 cut(s)	220, 537
BslI	CCNNNNNNNGG	4 cut(s)	244, 431, 432, 456
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	220, 537
BsnI	GGCC	1 cut(s)	256
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	362
Bsp120I	GGGCCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	38, 247, 266
BspACI	CCGC	4 cut(s)	109, 116, 286, 480
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	65
BspLI	GGNNCC	4 cut(s)	249, 256, 323, 553
BspPI	GGATC	2 cut(s)	242, 255
BspT107I	GGYRCC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	3 cut(s)	38, 247, 266
BssNAI	GTATAC	1 cut(s)	98
Bst1107I	GTATAC	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	386, 447, 566
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	1 cut(s)	632
BstDEI	CTNAG	2 cut(s)	73, 455
BstEII	GGTNACC	1 cut(s)	222
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	593
BstKTI	GATC	3 cut(s)	41, 250, 269
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	3 cut(s)	38, 247, 266
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 146, 207, 328, 415, 469
BstNI	CCWGG	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	133, 532
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	247
BstZ17I	GTATAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	593
BtsIMutI	CAGTG	2 cut(s)	141, 382
Cac8I	GCNNGC	1 cut(s)	632
Cfr13I	GGNCC	4 cut(s)	254, 255, 551, 661
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	443, 536
CviQI	GTAC	2 cut(s)	443, 536
DdeI	CTNAG	2 cut(s)	73, 455
DpnI	GATC	3 cut(s)	40, 249, 268
DpnII	GATC	3 cut(s)	38, 247, 266
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	551, 661
Eco72I	CACGTG	1 cut(s)	649
Eco88I	CYCGRG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	258
FaiI	YATR	7 cut(s)	57, 98, 411, 421, 452, 513, 628
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	2 cut(s)	220, 537
FbaI	TGATCA	1 cut(s)	266
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	110, 147, 287, 546
FokI	GGATG	1 cut(s)	600
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	110, 147, 287, 546
GluI	GCNGC	4 cut(s)	110, 147, 287, 546
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	1 cut(s)	641
HinfI	GANTC	2 cut(s)	2, 390
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	10, 19
Hpy166II	GTNNAC	2 cut(s)	98, 369
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	2 cut(s)	98, 369
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	480, 535
HpyCH4III	ACNGT	3 cut(s)	386, 447, 566
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	5 cut(s)	162, 210, 374, 463, 634
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 146, 207, 328, 415, 469
HpyF3I	CTNAG	2 cut(s)	73, 455
HpySE526I	ACGT	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	266
Kzo9I	GATC	3 cut(s)	38, 247, 266
Lsp1109I	GCAGC	2 cut(s)	133, 532
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	4 cut(s)	16, 47, 222, 296
MalI	GATC	3 cut(s)	40, 249, 268
MboI	GATC	3 cut(s)	38, 247, 266
MboII	GAAGA	4 cut(s)	173, 346, 495, 612
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	4 cut(s)	377, 572, 580, 656
MlyI	GAGTC	2 cut(s)	11, 399
MnlI	CCTC	6 cut(s)	16, 20, 101, 161, 213, 248
MseI	TTAA	2 cut(s)	399, 571
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	252
MunI	CAATTG	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	6 cut(s)	115, 146, 207, 328, 415, 469
NdeII	GATC	3 cut(s)	38, 247, 266
NlaIV	GGNNCC	4 cut(s)	249, 256, 323, 553
NmuCI	GTSAC	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	564
PkrI	GCNGC	4 cut(s)	111, 148, 288, 547
PleI	GAGTC	2 cut(s)	10, 398
PmaCI	CACGTG	1 cut(s)	649
PmlI	CACGTG	1 cut(s)	649
PpsI	GAGTC	2 cut(s)	10, 398
Ppu21I	YACGTR	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	649
PspEI	GGTNACC	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	4 cut(s)	249, 256, 323, 553
PspOMI	GGGCCC	1 cut(s)	254
PspPI	GGNCC	4 cut(s)	254, 255, 551, 661
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	2 cut(s)	444, 537
RsaNI	GTAC	2 cut(s)	443, 536
RseI	CAYNNNNRTG	1 cut(s)	564
SaqAI	TTAA	2 cut(s)	399, 571
SatI	GCNGC	4 cut(s)	110, 147, 287, 546
Sau3AI	GATC	3 cut(s)	38, 247, 266
Sau96I	GGNCC	4 cut(s)	254, 255, 551, 661
SchI	GAGTC	2 cut(s)	11, 399
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	3 cut(s)	224, 608, 651
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	2 cut(s)	551, 661
SmiMI	CAYNNNNRTG	1 cut(s)	564
Sse9I	AATT	4 cut(s)	377, 572, 580, 656
SsiI	CCGC	4 cut(s)	109, 116, 286, 480
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	386, 447, 566
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	1 cut(s)	218
TasI	AATT	4 cut(s)	377, 572, 580, 656
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	2 cut(s)	112, 289
Tru1I	TTAA	2 cut(s)	399, 571
Tru9I	TTAA	2 cut(s)	399, 571
TscAI	CASTG	2 cut(s)	141, 389
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	2 cut(s)	146, 545
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	2 cut(s)	141, 389
VpaK11BI	GGWCC	2 cut(s)	551, 661
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.