Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8192330.1

Orthogroup ID

OG0010046

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 649

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8192330.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgctggactcccggcacgtcatctcggtcctgggattctcctccgatcggaaacggcgccgtatgctgctggtttacgagttcatgagcaacgggaacctgcaggacgcgctgctgcaccggaagtgcccggagctgatggagtggaagaagaggttttcgattatggtggatgtggctaaaggtctttgctaccttcatggattggacccgccggttgtgcacggtgacgtcaagccgagtaatgtgctgctggacggcagcttcaatgtgaagattgccgatttcgggctggcgaggctaaagtcggaaattcaggttgtgattggggaggatgtgaagaagagtgatggtgtggaggtgaagaaggaggagctcgaagactgtggctctgtggttgaggaaaccgagagtgttagtgttgccactgcagggtttgaggattcgaatttgggagttgatcagtcgccggagagcttagtgatcaagctgcctgtttcgccggagactccggtgacggcctcaccaccggaggagaatgtggataaggaggggggagagaagccgagtgtgaataaggattggtggatgagacaggagaatgggagtggtgtgaaggactatgtgatggagtggattgggaatgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

216

Amino Acids

24.02

Weight (kDa)

4.89

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25390 AT4G25390 AT5G51770
fragaria_vesca	FvH4_7g28580 FvH4_7g28580
malus_domestica	MD12G1112300.v1.1
prunus_persica	Prupe.2G285800_v2.0.a1
pyrus_communis	pycom01g20260 pycom07g23830
rosa_chinensis	RchiOBHm_Chr1g0375991
rosa_laevigata	RLG00000026637
rosa_multiflora	Rmu_co8192330.1_g000001 Rmu_ssc0000116.1_g000012
rosa_roxburghii	Rroxscaffold_4G00282440
rosa_rugosa	Rorug01G0393500 Rorug02G0306800
rosa_samantha	Rh1AG404800 Rh1BG368300 Rh1CG381200 Rh1DG398200
rosa_wichuraiana	Rw1G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	57
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	312, 448
AcyI	GRCGYC	2 cut(s)	58, 231
AfiI	CCNNNNNNNGG	3 cut(s)	48, 288, 432
AgsI	TTSAA	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	5 cut(s)	136, 264, 376, 477, 490
AluI	AGCT	5 cut(s)	136, 264, 376, 477, 490
Alw21I	GWGCWC	2 cut(s)	225, 378
Alw26I	GTCTC	2 cut(s)	500, 586
Alw44I	GTGCAC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	519
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	6 cut(s)	67, 112, 115, 250, 261, 490
ApoI	RAATTY	2 cut(s)	312, 448
AspLEI	GCGC	2 cut(s)	60, 112
AspS9I	GGNCC	2 cut(s)	28, 208
AsuC2I	CCSGG	2 cut(s)	13, 131
AsuHPI	GGTGA	4 cut(s)	239, 373, 516, 526
AsuII	TTCGAA	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	28, 208
BaeGI	GKGCMC	2 cut(s)	131, 225
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	225, 378
BbvI	GCAGC	6 cut(s)	54, 99, 102, 237, 273, 477
BccI	CCATC	3 cut(s)	133, 344, 622
BceAI	ACGGC	4 cut(s)	45, 71, 274, 534
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	2 cut(s)	460, 483
BcnI	CCSGG	2 cut(s)	13, 131
BcoDI	GTCTC	2 cut(s)	500, 586
BfmI	CTRYAG	2 cut(s)	101, 429
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	108
BisI	GCNGC	6 cut(s)	68, 113, 116, 251, 262, 491
BlsI	GCNGC	6 cut(s)	69, 114, 117, 252, 263, 492
Bme1390I	CCNGG	3 cut(s)	13, 32, 131
Bme18I	GGWCC	2 cut(s)	28, 208
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	28, 208
BmiI	GGNNCC	3 cut(s)	59, 98, 210
BmrFI	CCNGG	3 cut(s)	13, 32, 131
BpiI	GAAGAC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	446
BpuMI	CCSGG	2 cut(s)	13, 131
BsaHI	GRCGYC	2 cut(s)	58, 231
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	3 cut(s)	120, 511, 529
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 288, 432
Bse118I	RCCGGY	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	3 cut(s)	178, 340, 594
BseLI	CCNNNNNNNGG	3 cut(s)	48, 288, 432
BseRI	GAGGAG	3 cut(s)	31, 386, 548
BseSI	GKGCMC	2 cut(s)	131, 225
BseXI	GCAGC	6 cut(s)	54, 99, 102, 237, 273, 477
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	225, 378
BsiSI	CCGG	8 cut(s)	13, 121, 131, 215, 470, 503, 512, 530
BslI	CCNNNNNNNGG	3 cut(s)	48, 288, 432
BsmAI	GTCTC	2 cut(s)	500, 586
BsnI	GGCC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	3 cut(s)	131, 225, 378
Bsp143I	GATC	3 cut(s)	46, 460, 483
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	521
BspFNI	CGCG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	3 cut(s)	59, 98, 210
BspMAI	CTGCAG	2 cut(s)	105, 433
BspMI	ACCTGC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	46, 460, 483
BssNI	GRCGYC	2 cut(s)	58, 231
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	227, 386
Bst6I	CTCTTC	2 cut(s)	146, 338
BstACI	GRCGYC	2 cut(s)	58, 231
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	178, 340, 594
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	60, 112
BstKTI	GATC	3 cut(s)	49, 463, 486
BstMAI	GTCTC	2 cut(s)	500, 586
BstMBI	GATC	3 cut(s)	46, 460, 483
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 109, 220, 298, 499
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	3 cut(s)	11, 30, 129
BstSFI	CTRYAG	2 cut(s)	101, 429
BstSLI	GKGCMC	2 cut(s)	131, 225
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	6 cut(s)	54, 99, 102, 237, 273, 477
BstV2I	GAAGAC	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	521
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	178, 340, 594
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	2 cut(s)	60, 112
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	28, 208
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	85, 200
DdeI	CTNAG	1 cut(s)	478
DinI	GGCGCC	1 cut(s)	59
DpnI	GATC	3 cut(s)	48, 462, 485
DpnII	GATC	3 cut(s)	46, 460, 483
Eam1104I	CTCTTC	2 cut(s)	146, 338
EarI	CTCTTC	2 cut(s)	146, 338
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	28, 208
Eco53kI	GAGCTC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	378
EgeI	GGCGCC	1 cut(s)	59
EheI	GGCGCC	1 cut(s)	59
FaeI	CATG	2 cut(s)	88, 203
FaiI	YATR	5 cut(s)	65, 86, 167, 201, 624
FatI	CATG	2 cut(s)	84, 199
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	2 cut(s)	460, 483
Fnu4HI	GCNGC	6 cut(s)	68, 113, 116, 251, 262, 491
FokI	GGATG	3 cut(s)	185, 347, 601
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	6 cut(s)	68, 113, 116, 251, 262, 491
GlaI	GCGC	2 cut(s)	59, 111
GluI	GCNGC	6 cut(s)	68, 113, 116, 251, 262, 491
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	8 cut(s)	13, 121, 131, 215, 470, 503, 512, 530
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	2 cut(s)	60, 112
Hin1I	GRCGYC	2 cut(s)	58, 231
Hin1II	CATG	2 cut(s)	88, 203
Hin6I	GCGC	2 cut(s)	58, 110
HinP1I	GCGC	2 cut(s)	58, 110
HinfI	GANTC	4 cut(s)	8, 36, 443, 508
HpaII	CCGG	8 cut(s)	13, 121, 131, 215, 470, 503, 512, 530
HphI	GGTGA	4 cut(s)	239, 373, 516, 526
Hpy166II	GTNNAC	2 cut(s)	76, 223
Hpy188I	TCNGA	3 cut(s)	46, 51, 310
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	2 cut(s)	76, 223
HpyAV	CCTTC	3 cut(s)	206, 361, 610
HpyCH4III	ACNGT	2 cut(s)	227, 386
HpyCH4IV	ACGT	2 cut(s)	18, 231
HpyCH4V	TGCA	4 cut(s)	103, 118, 223, 431
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 109, 220, 298, 499
HpyF3I	CTNAG	1 cut(s)	478
HpySE526I	ACGT	2 cut(s)	18, 231
Hsp92I	GRCGYC	2 cut(s)	58, 231
Hsp92II	CATG	2 cut(s)	88, 203
HspAI	GCGC	2 cut(s)	58, 110
KasI	GGCGCC	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	460, 483
Kzo9I	GATC	3 cut(s)	46, 460, 483
LmnI	GCTCC	2 cut(s)	133, 373
Lsp1109I	GCAGC	6 cut(s)	54, 99, 102, 237, 273, 477
MaeII	ACGT	2 cut(s)	18, 231
MaeIII	GTNAC	2 cut(s)	227, 514
MalI	GATC	3 cut(s)	48, 462, 485
MboI	GATC	3 cut(s)	46, 460, 483
MboII	GAAGA	7 cut(s)	160, 163, 286, 352, 355, 376, 392
MhlI	GDGCHC	3 cut(s)	131, 225, 378
MluCI	AATT	2 cut(s)	312, 448
Mly113I	GGCGCC	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	2, 502
MmeI	TCCRAC	1 cut(s)	288
MspI	CCGG	8 cut(s)	13, 121, 131, 215, 470, 503, 512, 530
MspR9I	CCNGG	3 cut(s)	13, 32, 131
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	5 cut(s)	64, 109, 220, 298, 499
NarI	GGCGCC	1 cut(s)	58
NciI	CCSGG	2 cut(s)	13, 131
NdeII	GATC	3 cut(s)	46, 460, 483
NlaIII	CATG	2 cut(s)	88, 203
NlaIV	GGNNCC	3 cut(s)	59, 98, 210
NmeAIII	GCCGAG	2 cut(s)	264, 591
NmuCI	GTSAC	2 cut(s)	227, 514
NspV	TTCGAA	1 cut(s)	446
PagI	TCATGA	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	36, 443
PkrI	GCNGC	6 cut(s)	69, 114, 117, 252, 263, 492
Ple19I	CGATCG	1 cut(s)	49
PleI	GAGTC	2 cut(s)	2, 502
PluTI	GGCGCC	1 cut(s)	61
PpsI	GAGTC	2 cut(s)	2, 502
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	59, 98, 210
PspPI	GGNCC	2 cut(s)	28, 208
PstI	CTGCAG	2 cut(s)	105, 433
PvuI	CGATCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	378
SatI	GCNGC	6 cut(s)	68, 113, 116, 251, 262, 491
Sau3AI	GATC	3 cut(s)	46, 460, 483
Sau96I	GGNCC	2 cut(s)	28, 208
SbfI	CCTGCAGG	1 cut(s)	105
SchI	GAGTC	2 cut(s)	2, 502
ScrFI	CCNGG	3 cut(s)	13, 32, 131
SdaI	CCTGCAGG	1 cut(s)	105
SduI	GDGCHC	3 cut(s)	131, 225, 378
SfcI	CTRYAG	2 cut(s)	101, 429
SfoI	GGCGCC	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	446
SinI	GGWCC	2 cut(s)	28, 208
Sse8387I	CCTGCAGG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	312, 448
SsiI	CCGC	1 cut(s)	212
SspDI	GGCGCC	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	11, 30, 129
TaaI	ACNGT	2 cut(s)	227, 386
TaiI	ACGT	2 cut(s)	21, 234
TaqI	TCGA	3 cut(s)	161, 378, 446
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	2 cut(s)	312, 448
TfiI	GAWTC	2 cut(s)	36, 443
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	2 cut(s)	227, 514
TseI	GCWGC	6 cut(s)	67, 112, 115, 250, 261, 490
Tsp45I	GTSAC	2 cut(s)	227, 514
TspDTI	ATGAA	2 cut(s)	73, 188
TspRI	CASTG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	28, 208
XapI	RAATTY	2 cut(s)	312, 448
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.