Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010046

Physical Location & Seq

Genomic Coordinates Reverse (-)

34694991 .. 34695507

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0306800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGCATTGTTTTTCATCCATTATTGTCAGAGTTCAAGAAAATATATCGAACAAGTCTAAGAGCCAGGAAATTGTTTGACGAGTTACTTAGAGTTAAGAGACAGCAACAACATCGCCATTTAGAACGTGATACTAAGCAACAAAGGATGGTCTCTGATCTTGAAGCAAGAGAACGAGCTGCCTTTGCTCCAGACCCAGCAGCCACAGAAAGAGAAGAAGAGGAGAGACTTTTTAGGAAACTTGCTGAAGAGGTTTCGAGAATACGTCCAATGCATGCGAGTAAAAGGGCGCCTACTGCTTCAGTTCCCAAAAAAGAGAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGGTGCTGAGTTGGGAAGAATAGAAAAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.68

Weight (kDa)

10.25

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25390 AT4G25390 AT5G51770
fragaria_vesca	FvH4_7g28580 FvH4_7g28580
malus_domestica	MD12G1112300.v1.1
prunus_persica	Prupe.2G285800_v2.0.a1
pyrus_communis	pycom01g20260 pycom07g23830
rosa_chinensis	RchiOBHm_Chr1g0375991
rosa_laevigata	RLG00000026637
rosa_multiflora	Rmu_co8192330.1_g000001 Rmu_ssc0000116.1_g000012
rosa_roxburghii	Rroxscaffold_4G00282440
rosa_rugosa	Rorug01G0393500 Rorug02G0306800
rosa_samantha	Rh1AG404800 Rh1BG368300 Rh1CG381200 Rh1DG398200
rosa_wichuraiana	Rw1G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	267, 285
AcyI	GRCGYC	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	37, 164
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw26I	GTCTC	3 cut(s)	94, 157, 220
ApeKI	GCWGC	2 cut(s)	179, 200
AspLEI	GCGC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	166, 212
BccI	CCATC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	94, 157, 220
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	2 cut(s)	180, 201
BlsI	GCNGC	2 cut(s)	181, 202
Bme1390I	CCNGG	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	16, 153
BseMII	CTCAG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	166, 212
BseYI	CCCAGC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	289
BsmAI	GTCTC	3 cut(s)	94, 157, 220
Bso31I	GGTCTC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	157
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	213, 243
BstACI	GRCGYC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	59, 89, 135, 354
BstF5I	GGATG	2 cut(s)	16, 153
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	3 cut(s)	94, 157, 220
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 296
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	166, 212
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	16, 153
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	292
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	3 cut(s)	65, 179, 203
CviKI_1	RGCY	3 cut(s)	65, 179, 203
DdeI	CTNAG	4 cut(s)	59, 89, 135, 354
DinI	GGCGCC	1 cut(s)	291
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	213, 243
EarI	CTCTTC	2 cut(s)	213, 243
Eco31I	GGTCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	267, 285
EcoRII	CCWGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	276
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
FaeI	CATG	1 cut(s)	278
FaiI	YATR	2 cut(s)	46, 276
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	180, 201
FokI	GGATG	2 cut(s)	3, 160
Fsp4HI	GCNGC	2 cut(s)	180, 201
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	2 cut(s)	180, 201
GsaI	CCCAGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	293
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	31, 157
Hpy188III	TCNNGA	4 cut(s)	37, 161, 191, 258
HpyAV	CCTTC	1 cut(s)	328
HpyCH4IV	ACGT	3 cut(s)	127, 265, 377
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 296
HpyF3I	CTNAG	4 cut(s)	59, 89, 135, 354
HpySE526I	ACGT	3 cut(s)	127, 265, 377
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	290
KasI	GGCGCC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	52, 79, 204, 210
Lsp1109I	GCAGC	2 cut(s)	166, 212
MaeII	ACGT	3 cut(s)	127, 265, 377
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	4 cut(s)	227, 230, 260, 375
MluCI	AATT	1 cut(s)	71
Mly113I	GGCGCC	1 cut(s)	290
MnlI	CCTC	2 cut(s)	214, 244
Mph1103I	ATGCAT	1 cut(s)	276
MseI	TTAA	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	185, 296
NarI	GGCGCC	1 cut(s)	290
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	181, 202
PluTI	GGCGCC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	180, 201
Sau3AI	GATC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	5 cut(s)	130, 181, 255, 268, 380
SfoI	GGCGCC	1 cut(s)	291
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	1 cut(s)	71
SspDI	GGCGCC	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	65
TaiI	ACGT	3 cut(s)	130, 268, 380
TaqI	TCGA	2 cut(s)	49, 257
TasI	AATT	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	2 cut(s)	179, 200
TspDTI	ATGAA	1 cut(s)	5
XceI	RCATGY	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.