Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010046

Physical Location & Seq

Genomic Coordinates Reverse (-)

50390198 .. 50393128

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0393500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCGAGTTGGGTCATCTCAGAATGTGGCCTAAAGCCTCTCCCTAGAATCTACCCTCAAACCAGAAATGGCCTGACCTCAAAACCCATTAGGCCATTGCTGCTCAGCAAAAGCAAGAATCTTGGTTCTGCTTTGAGGCTCTCAAATGGGTTTAGAGGGCAGAGTTGGGCACTCAATGTCAGTGCTCCACTGAATGTGGTAACTCTTGGAGAAGATAGTGTAAATGGGGTTGATCAAGATCGTGGGGAGTTTGACCCTGGTGCAGCTCCTCCGTTTAATTTGGGTGATATTCGGGCAGCAATTCCGAAGCATTGTTGGGTTAAGAATCCTTGGAAGTCTATGAGTTATGTTGTGAGGGATGTGGCTGTGGTTTTTGGCTTGGCGGCTGTGGCGGCTTACTTTAACAGTTGGGCTGTTTGGCCTCTTTACTGGTTTGCTCAGAGCACCATGTTCTGGGCTCTCTTTGTTCTTGGCCATGATTGTGGTCATGGAAGTTTCTCTAACAACCCAAAGCTGAATAGTGTGGTGGGTCATCTTCTTCATTCTTCAATCCTTGTCCCATACCATGGATGGAGAATAAGTCATAGAACTCATCATCAGAACCATGGTCATGTCGAAAATGATGAGTCTTGGCATCCGTTAACTGAGAAAATTTTCAAACGTTTGGATAAGGCTACTCAGATATTGAGGTTTGCCTTGCCTTTCCCTATGCTCGCTTACCCCTTTTATCTGTGGAGTAGAAGTCCAGGAAAGAAAGGTTCTCATTATAATCCGAACAGCGATTTGTTTCTTCCAAATGAAAGGAAAGATATTATTACCTCCACTACCTGTTGGACTGCAATGGTTGCCGTGCTTGTTGGTCTGTCCTTTATAATGGGTCCAATCCAAATGCTTAAGCTTTATGGAGTTCCATACTGGGGGTTCGTCATATGGTTGGACTTGGTGACTTACTTGCATCACCATGGTCATGAGGACAAGCTTCCATGGTATCGTGGAAAGGAATGGAGTTATCTAAGAGGAGGGCTGACAACCCTTGATCGTGACTATGGACTGATCAATAACATCCATCATGATATTGGCACTCATGTCATACATCACCTGTTCCCTCAAATCCCACACTACAACTTAGTAGAAGCAACGGAGGCAGCCAAGCCTGTGTTTGGGAAGTACTACAGGGAGCCAAAGAAATCCGGGCCTCTCCCGTTCCATTTATTGGGAGTCCTTGTAAAAAGCTTCAAGAAGGATCACTATGTAAGTGATACTGGGGATGTTGTATATTATCAAACTGATGAGAAACTCTCCGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

436

Amino Acids

49.5

Weight (kDa)

9.23

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	1 - 129	1.3e-49	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	136 - 391	1.7e-30	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25390 AT4G25390 AT5G51770
fragaria_vesca	FvH4_7g28580 FvH4_7g28580
malus_domestica	MD12G1112300.v1.1
prunus_persica	Prupe.2G285800_v2.0.a1
pyrus_communis	pycom01g20260 pycom07g23830
rosa_chinensis	RchiOBHm_Chr1g0375991
rosa_laevigata	RLG00000026637
rosa_multiflora	Rmu_co8192330.1_g000001 Rmu_ssc0000116.1_g000012
rosa_roxburghii	Rroxscaffold_4G00282440
rosa_rugosa	Rorug01G0393500 Rorug02G0306800
rosa_samantha	Rh1AG404800 Rh1BG368300 Rh1CG381200 Rh1DG398200
rosa_wichuraiana	Rw1G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	768, 872
AccB7I	CCANNNNNTGG	3 cut(s)	453, 566, 1213
AccIII	TCCGGA	1 cut(s)	1301
AciI	CCGC	2 cut(s)	383, 392
AclI	AACGTT	1 cut(s)	661
AclWI	GGATC	1 cut(s)	1251
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	651
AfaI	GTAC	1 cut(s)	1169
AfiI	CCNNNNNNNGG	5 cut(s)	453, 566, 917, 1160, 1213
AflII	CTTAAG	1 cut(s)	893
AgsI	TTSAA	3 cut(s)	549, 658, 1237
AjnI	CCWGG	2 cut(s)	256, 745
AluBI	AGCT	5 cut(s)	266, 514, 898, 979, 1233
AluI	AGCT	5 cut(s)	266, 514, 898, 979, 1233
Alw21I	GWGCWC	2 cut(s)	187, 446
AlwI	GGATC	1 cut(s)	1251
Aor13HI	TCCGGA	1 cut(s)	1301
AoxI	GGCC	6 cut(s)	28, 70, 92, 419, 472, 1193
ApeKI	GCWGC	4 cut(s)	100, 263, 296, 1145
ApoI	RAATTY	1 cut(s)	651
Asp700I	GAANNNNTTC	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	878, 1193
AsuC2I	CCSGG	1 cut(s)	1192
AsuHPI	GGTGA	4 cut(s)	296, 950, 955, 1088
AvaII	GGWCC	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	460
Bbv12I	GWGCWC	2 cut(s)	187, 446
BbvI	GCAGC	4 cut(s)	87, 275, 308, 1157
BccI	CCATC	2 cut(s)	564, 1074
BceAI	ACGGC	1 cut(s)	833
BciT130I	CCWGG	2 cut(s)	258, 747
BclI	TGATCA	2 cut(s)	232, 1053
BcnI	CCSGG	1 cut(s)	1192
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	1171
BfrI	CTTAAG	1 cut(s)	893
BisI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1146
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	6 cut(s)	102, 265, 298, 385, 394, 1147
BmcAI	AGTACT	1 cut(s)	1169
Bme1390I	CCNGG	3 cut(s)	258, 747, 1192
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	878, 1193
BmiI	GGNNCC	2 cut(s)	879, 1179
BmrFI	CCNGG	3 cut(s)	258, 747, 1192
BmrI	ACTGGG	2 cut(s)	925, 1272
BmsI	GCATC	2 cut(s)	643, 964
BmuI	ACTGGG	2 cut(s)	925, 1272
BplI	GAGNNNNNCTC	1 cut(s)	1283
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	1192
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	6 cut(s)	256, 329, 565, 604, 961, 983
BsaWI	WCCGGW	1 cut(s)	1301
BsaXI	ACNNNNNCTCC	6 cut(s)	565, 595, 727, 757, 1209, 1239
Bsc4I	CCNNNNNNNGG	5 cut(s)	453, 566, 917, 1160, 1213
Bse1I	ACTGG	3 cut(s)	434, 920, 1267
Bse3DI	GCAATG	2 cut(s)	95, 846
Bse8I	GATNNNNATC	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	1301
BseBI	CCWGG	2 cut(s)	258, 747
BseDI	CCNNGG	6 cut(s)	256, 329, 565, 604, 961, 983
BseGI	GGATG	5 cut(s)	364, 575, 634, 1062, 1273
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	5 cut(s)	453, 566, 917, 1160, 1213
BseMI	GCAATG	2 cut(s)	95, 846
BseMII	CTCAG	5 cut(s)	33, 118, 452, 636, 692
BseNI	ACTGG	3 cut(s)	434, 920, 1267
BseRI	GAGGAG	2 cut(s)	258, 1032
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	4 cut(s)	87, 275, 308, 1157
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	6 cut(s)	30, 72, 94, 421, 474, 1195
BsiHKAI	GWGCWC	2 cut(s)	187, 446
BsiSI	CCGG	2 cut(s)	1191, 1302
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	5 cut(s)	453, 566, 917, 1160, 1213
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	6 cut(s)	30, 72, 94, 421, 474, 1195
Bsp1286I	GDGCHC	4 cut(s)	172, 187, 446, 460
Bsp13I	TCCGGA	1 cut(s)	1301
Bsp143I	GATC	6 cut(s)	232, 238, 1036, 1053, 1243, 1304
Bsp1720I	GCTNAGC	1 cut(s)	104
Bsp19I	CCATGG	4 cut(s)	565, 604, 961, 983
BspACI	CCGC	2 cut(s)	383, 392
BspANI	GGCC	6 cut(s)	30, 72, 94, 421, 474, 1195
BspCNI	CTCAG	5 cut(s)	32, 117, 451, 637, 691
BspEI	TCCGGA	1 cut(s)	1301
BspHI	TCATGA	2 cut(s)	967, 1069
BspLI	GGNNCC	2 cut(s)	879, 1179
BspPI	GGATC	1 cut(s)	1251
BspTI	CTTAAG	1 cut(s)	893
BsrDI	GCAATG	2 cut(s)	95, 846
BsrI	ACTGG	3 cut(s)	434, 920, 1267
BssECI	CCNNGG	6 cut(s)	256, 329, 565, 604, 961, 983
BssMI	GATC	6 cut(s)	232, 238, 1036, 1053, 1243, 1304
BssT1I	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
Bst2UI	CCWGG	2 cut(s)	258, 747
Bst4CI	ACNGT	1 cut(s)	407
BstAFI	CTTAAG	1 cut(s)	893
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	8 cut(s)	19, 104, 438, 645, 678, 1013, 1126, 1308
BstDSI	CCRYGG	4 cut(s)	565, 604, 961, 983
BstF5I	GGATG	5 cut(s)	364, 575, 634, 1062, 1273
BstKTI	GATC	6 cut(s)	235, 241, 1039, 1056, 1246, 1307
BstMBI	GATC	6 cut(s)	232, 238, 1036, 1053, 1243, 1304
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 389, 392, 845, 1142
BstNI	CCWGG	2 cut(s)	258, 747
BstSCI	CCNGG	3 cut(s)	256, 745, 1190
BstSFI	CTRYAG	1 cut(s)	1171
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	87, 275, 308, 1157
BstX2I	RGATCY	1 cut(s)	1304
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	1304
BsuRI	GGCC	6 cut(s)	30, 72, 94, 421, 474, 1195
BtgI	CCRYGG	4 cut(s)	565, 604, 961, 983
BtsCI	GGATG	5 cut(s)	364, 575, 634, 1062, 1273
BtsIMutI	CAGTG	2 cut(s)	187, 188
Cac8I	GCNNGC	1 cut(s)	714
CciI	TCATGA	2 cut(s)	967, 1069
Cfr13I	GGNCC	2 cut(s)	878, 1193
Csp6I	GTAC	1 cut(s)	1168
CviQI	GTAC	1 cut(s)	1168
DdeI	CTNAG	8 cut(s)	19, 104, 438, 645, 678, 1013, 1126, 1308
DpnI	GATC	6 cut(s)	234, 240, 1038, 1055, 1245, 1306
DpnII	GATC	6 cut(s)	232, 238, 1036, 1053, 1243, 1304
EaeI	YGGCCR	1 cut(s)	472
Eco130I	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	878
EcoRII	CCWGG	2 cut(s)	256, 745
EcoT14I	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
FaqI	GGGAC	1 cut(s)	542
FauNDI	CATATG	1 cut(s)	929
FbaI	TGATCA	2 cut(s)	232, 1053
Fnu4HI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1146
FokI	GGATG	5 cut(s)	371, 582, 621, 1049, 1280
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1146
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1146
HaeIII	GGCC	6 cut(s)	30, 72, 94, 421, 474, 1195
HapII	CCGG	2 cut(s)	1191, 1302
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	3 cut(s)	896, 977, 1231
HinfI	GANTC	5 cut(s)	48, 118, 325, 626, 1218
HpaI	GTTAAC	1 cut(s)	642
HpaII	CCGG	2 cut(s)	1191, 1302
HphI	GGTGA	4 cut(s)	296, 950, 955, 1088
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	6 cut(s)	22, 306, 441, 600, 681, 774
Hpy188III	TCNNGA	6 cut(s)	236, 968, 1040, 1070, 1237, 1302
Hpy8I	GTNNAC	1 cut(s)	642
HpyAV	CCTTC	1 cut(s)	1234
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	3 cut(s)	263, 839, 955
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 389, 392, 845, 1142
HpyF3I	CTNAG	8 cut(s)	19, 104, 438, 645, 678, 1013, 1126, 1308
HpySE526I	ACGT	1 cut(s)	661
Kpn2I	TCCGGA	1 cut(s)	1301
Ksp22I	TGATCA	2 cut(s)	232, 1053
KspAI	GTTAAC	1 cut(s)	642
Kzo9I	GATC	6 cut(s)	232, 238, 1036, 1053, 1243, 1304
LmnI	GCTCC	3 cut(s)	190, 271, 1177
Lsp1109I	GCAGC	4 cut(s)	87, 275, 308, 1157
LweI	GCATC	2 cut(s)	643, 964
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	3 cut(s)	199, 943, 1040
MalI	GATC	6 cut(s)	234, 240, 1038, 1055, 1245, 1306
MboI	GATC	6 cut(s)	232, 238, 1036, 1053, 1243, 1304
MboII	GAAGA	5 cut(s)	224, 527, 530, 537, 782
MflI	RGATCY	1 cut(s)	1304
MhlI	GDGCHC	4 cut(s)	172, 187, 446, 460
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	3 cut(s)	277, 300, 651
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	2 cut(s)	635, 1227
MmeI	TCCRAC	2 cut(s)	812, 915
Mox20I	TGGCCA	1 cut(s)	474
MroI	TCCGGA	1 cut(s)	1301
MroXI	GAANNNNTTC	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	5 cut(s)	276, 321, 402, 641, 894
MslI	CAYNNNNRTG	4 cut(s)	480, 609, 960, 966
Msp20I	TGGCCA	1 cut(s)	474
MspCI	CTTAAG	1 cut(s)	893
MspI	CCGG	2 cut(s)	1191, 1302
MspR9I	CCNGG	3 cut(s)	258, 747, 1192
MvaI	CCWGG	2 cut(s)	258, 747
MwoI	GCNNNNNNNGC	5 cut(s)	100, 389, 392, 845, 1142
NciI	CCSGG	1 cut(s)	1192
NcoI	CCATGG	4 cut(s)	565, 604, 961, 983
NdeI	CATATG	1 cut(s)	929
NdeII	GATC	6 cut(s)	232, 238, 1036, 1053, 1243, 1304
NlaIV	GGNNCC	2 cut(s)	879, 1179
NmuCI	GTSAC	2 cut(s)	943, 1040
PagI	TCATGA	2 cut(s)	967, 1069
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	48, 118, 325
PflMI	CCANNNNNTGG	3 cut(s)	453, 566, 1213
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	6 cut(s)	102, 265, 298, 385, 394, 1147
PleI	GAGTC	2 cut(s)	634, 1226
PpsI	GAGTC	2 cut(s)	634, 1226
PsiI	TTATAA	2 cut(s)	768, 872
Psp1406I	AACGTT	1 cut(s)	661
Psp6I	CCWGG	2 cut(s)	256, 745
PspGI	CCWGG	2 cut(s)	256, 745
PspN4I	GGNNCC	2 cut(s)	879, 1179
PspPI	GGNCC	2 cut(s)	878, 1193
PsuI	RGATCY	1 cut(s)	1304
RsaI	GTAC	1 cut(s)	1169
RsaNI	GTAC	1 cut(s)	1168
RseI	CAYNNNNRTG	4 cut(s)	480, 609, 960, 966
SaqAI	TTAA	5 cut(s)	276, 321, 402, 641, 894
SatI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1146
Sau3AI	GATC	6 cut(s)	232, 238, 1036, 1053, 1243, 1304
Sau96I	GGNCC	2 cut(s)	878, 1193
ScaI	AGTACT	1 cut(s)	1169
SchI	GAGTC	2 cut(s)	635, 1227
ScrFI	CCNGG	3 cut(s)	258, 747, 1192
SduI	GDGCHC	4 cut(s)	172, 187, 446, 460
SfaNI	GCATC	2 cut(s)	643, 964
SfcI	CTRYAG	1 cut(s)	1171
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	4 cut(s)	480, 609, 960, 966
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	3 cut(s)	277, 300, 651
SsiI	CCGC	2 cut(s)	383, 392
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	256, 745, 1190
StyI	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	1 cut(s)	615
TasI	AATT	3 cut(s)	277, 300, 651
TatI	WGTACW	1 cut(s)	1167
TauI	GCSGC	2 cut(s)	386, 395
TfiI	GAWTC	3 cut(s)	48, 118, 325
Tru1I	TTAA	5 cut(s)	276, 321, 402, 641, 894
Tru9I	TTAA	5 cut(s)	276, 321, 402, 641, 894
TscAI	CASTG	2 cut(s)	187, 195
TseFI	GTSAC	2 cut(s)	943, 1040
TseI	GCWGC	4 cut(s)	100, 263, 296, 1145
Tsp45I	GTSAC	2 cut(s)	943, 1040
TspDTI	ATGAA	2 cut(s)	530, 813
TspGWI	ACGGA	3 cut(s)	261, 627, 1154
TspRI	CASTG	2 cut(s)	187, 195
Van91I	CCANNNNNTGG	3 cut(s)	453, 566, 1213
Vha464I	CTTAAG	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	1 cut(s)	651
XcmI	CCANNNNNNNNNTGG	2 cut(s)	567, 1073
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.