Rmu_co8225042.1_g000001

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8225042.1
OG0019377
Physical Location & Seq
Forward (+)
1 .. 637
637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8225042.1_g000001.1.cds

Sequence Viewer

Length: 323 bp
acttcactagggttgatcttggagtgcctgggactgcggctattcaagcttatcaccggtacatggatgttggagattgctttgtgtttcaatttgagcacaaggctgacaagaatctgatcttgtatggaggtacttggttttatcgaaacacaatggtgattttggcaaagtacgatggcataggaccggtggaggtcattccactgaagtcgattgagacgtgggttgcagtgaaaggcctggctccggcactgcgaaataaggtggctgtgtcacttgtaggctctaagctcttccatggggcgtgtcataagatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

106

Amino Acids

11.75

Weight (kDa)

9.2

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 229
AfaI GTAC 3 cut(s) 61, 135, 175
AfiI CCNNNNNNNGG 2 cut(s) 63, 249
AgeI ACCGGT 2 cut(s) 56, 189
AgsI TTSAA 2 cut(s) 46, 91
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 2 cut(s) 27, 242
AleI CACNNNNGTG 1 cut(s) 157
AluBI AGCT 2 cut(s) 49, 294
AluI AGCT 2 cut(s) 49, 294
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 214
AoxI GGCC 1 cut(s) 240
AsiGI ACCGGT 2 cut(s) 56, 189
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 46, 171
AvaII GGWCC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 29, 244
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 8
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 29, 244
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 29, 244
BsaJI CCNNGG 2 cut(s) 28, 300
BsaWI WCCGGW 2 cut(s) 56, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 249
Bse118I RCCGGY 2 cut(s) 56, 189
BseBI CCWGG 2 cut(s) 29, 244
BseDI CCNNGG 2 cut(s) 28, 300
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 63, 249
BshFI GGCC 1 cut(s) 242
BshTI ACCGGT 2 cut(s) 56, 189
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 3 cut(s) 57, 190, 250
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 63, 249
BsmAI GTCTC 1 cut(s) 214
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 15, 119
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 301
BsrFI RCCGGY 2 cut(s) 56, 189
BssAI RCCGGY 2 cut(s) 56, 189
BssECI CCNNGG 2 cut(s) 28, 300
BssMI GATC 2 cut(s) 15, 119
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 29, 244
Bst6I CTCTTC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 2 cut(s) 18, 122
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 2 cut(s) 15, 119
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 29, 244
BstSCI CCNGG 2 cut(s) 27, 242
BsuRI GGCC 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 2 cut(s) 239, 253
BtsIMutI CAGTG 3 cut(s) 205, 239, 253
Cfr10I RCCGGY 2 cut(s) 56, 189
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 60, 134, 174
CspAI ACCGGT 2 cut(s) 56, 189
CviAII CATG 2 cut(s) 63, 301
CviJI RGCY 8 cut(s) 40, 49, 106, 242, 247, 271, 287, 294
CviKI_1 RGCY 8 cut(s) 40, 49, 106, 242, 247, 271, 287, 294
CviQI GTAC 3 cut(s) 60, 134, 174
DdeI CTNAG 1 cut(s) 290
DpnI GATC 2 cut(s) 17, 121
DpnII GATC 2 cut(s) 15, 119
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 27, 242
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 2 cut(s) 66, 304
FaiI YATR 5 cut(s) 64, 128, 184, 302, 314
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 62, 300
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 242
HapII CCGG 3 cut(s) 57, 190, 250
Hin1II CATG 2 cut(s) 66, 304
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 114
HpaII CCGG 3 cut(s) 57, 190, 250
HphI GGTGA 2 cut(s) 46, 171
Hpy188I TCNGA 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 66, 304
Kzo9I GATC 2 cut(s) 15, 119
LguI GCTCTTC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 7 cut(s) 14, 41, 70, 203, 229, 256, 263
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 17, 121
MboI GATC 2 cut(s) 15, 119
MboII GAAGA 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 2 cut(s) 124, 189
MslI CAYNNNNRTG 1 cut(s) 157
MspI CCGG 3 cut(s) 57, 190, 250
MspR9I CCNGG 2 cut(s) 29, 244
MvaI CCWGG 2 cut(s) 29, 244
MwoI GCNNNNNNNGC 1 cut(s) 46
NcoI CCATGG 1 cut(s) 300
NdeII GATC 2 cut(s) 15, 119
NlaIII CATG 2 cut(s) 66, 304
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 157
PceI AGGCCT 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PfeI GAWTC 1 cut(s) 114
PinAI ACCGGT 2 cut(s) 56, 189
PkrI GCNGC 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 27, 242
PspGI CCWGG 2 cut(s) 27, 242
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 187
RsaI GTAC 3 cut(s) 61, 135, 175
RsaNI GTAC 3 cut(s) 60, 134, 174
RseI CAYNNNNRTG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 301
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 15, 119
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 29, 244
SduI GDGCHC 1 cut(s) 101
SetI ASST 6 cut(s) 51, 135, 200, 226, 269, 296
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 1 cut(s) 91
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 8
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 27, 242
StyI CCWWGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 147, 214
TasI AATT 1 cut(s) 91
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 114
TscAI CASTG 3 cut(s) 212, 239, 260
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspRI CASTG 3 cut(s) 212, 239, 260
VpaK11BI GGWCC 1 cut(s) 187
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.