Rmu_sc0000753.1_g000022

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000753.1
OG0019377
Physical Location & Seq
Reverse (-)
117681 .. 118117
437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000753.1_g000022.1.cds

Sequence Viewer

Length: 354 bp
atggcgcagattagggctatggctgctcgtaacccctccgactctgcaagggtcacactgggagaggcccaggggcggcggcgctgcaggatactcactagtatatggttgggcgcctacttgggaataagactcgattccctgtttgatcacgaagcggatcgcaacagggctctgcatggcgagccatggttttacaggaatacattgttgttgcttggagactatgatgggattggttcagtggaaacagtcccgctgtggaagttcgagacttgggtagtggtgaagggactgcccatagcccttcgtaacaaagtagccctaaatctgatagggtctgcgactggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

117

Amino Acids

13.05

Weight (kDa)

9.73

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 4 cut(s) 76, 79, 158, 257
AclWI GGATC 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 75
AhlI ACTAGT 1 cut(s) 98
AjnI CCWGG 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 216, 266
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 23, 84
AspLEI GCGC 3 cut(s) 7, 84, 116
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 298
BanI GGYRCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 175
BbvI GCAGC 2 cut(s) 10, 71
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 71
BciVI GTATCC 1 cut(s) 84
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 216, 266
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 2 cut(s) 99, 352
BfmI CTRYAG 1 cut(s) 85
BfoI RGCGCY 2 cut(s) 85, 117
BfuI GTATCC 1 cut(s) 84
BisI GCNGC 4 cut(s) 24, 77, 80, 85
BlsI GCNGC 4 cut(s) 25, 78, 81, 86
Bme1390I CCNGG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 69, 70, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 63, 352
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 69, 70, 188
BseLI CCNNNNNNNGG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 63, 352
BseXI GCAGC 2 cut(s) 10, 71
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 113
BslFI GGGAC 2 cut(s) 239, 306
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 2 cut(s) 216, 266
BsmFI GGGAC 2 cut(s) 239, 306
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 148, 160
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 4 cut(s) 76, 79, 158, 257
BspANI GGCC 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 89
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 63, 352
BssECI CCNNGG 3 cut(s) 69, 70, 188
BssMI GATC 2 cut(s) 148, 160
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 253
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 188
BstH2I RGCGCY 2 cut(s) 85, 117
BstHHI GCGC 3 cut(s) 7, 84, 116
BstKTI GATC 2 cut(s) 151, 163
BstMAI GTCTC 2 cut(s) 216, 266
BstMBI GATC 2 cut(s) 148, 160
BstMWI GCNNNNNNNGC 2 cut(s) 23, 184
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 10, 71
BsuI GTATCC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 188
BtsIMutI CAGTG 2 cut(s) 56, 249
Cac8I GCNNGC 1 cut(s) 185
CfoI GCGC 3 cut(s) 7, 84, 116
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 2 cut(s) 179, 189
CviJI RGCY 8 cut(s) 17, 23, 68, 173, 187, 305, 323, 351
CviKI_1 RGCY 8 cut(s) 17, 23, 68, 173, 187, 305, 323, 351
DinI GGCGCC 1 cut(s) 115
DpnI GATC 2 cut(s) 150, 162
DpnII GATC 2 cut(s) 148, 160
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 182, 192
FaiI YATR 7 cut(s) 20, 104, 106, 180, 190, 228, 302
FaqI GGGAC 2 cut(s) 239, 306
FatI CATG 2 cut(s) 178, 188
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 24, 77, 80, 85
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 4 cut(s) 24, 77, 80, 85
FspBI CTAG 2 cut(s) 99, 352
GlaI GCGC 3 cut(s) 6, 83, 115
GluI GCNGC 4 cut(s) 24, 77, 80, 85
HaeII RGCGCY 2 cut(s) 85, 117
HaeIII GGCC 1 cut(s) 68
HhaI GCGC 3 cut(s) 7, 84, 116
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 2 cut(s) 182, 192
Hin6I GCGC 3 cut(s) 5, 82, 114
HinP1I GCGC 3 cut(s) 5, 82, 114
HinfI GANTC 3 cut(s) 41, 132, 137
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 40, 333
Hpy188III TCNNGA 2 cut(s) 152, 271
HpyAV CCTTC 2 cut(s) 283, 317
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 47, 87, 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 184
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 2 cut(s) 182, 192
HspAI GCGC 3 cut(s) 5, 82, 114
KasI GGCGCC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 160
LpnPI CCDG 8 cut(s) 44, 56, 73, 83, 154, 155, 184, 333
Lsp1109I GCAGC 2 cut(s) 10, 71
MaeI CTAG 2 cut(s) 99, 352
MaeIII GTNAC 3 cut(s) 29, 52, 311
MalI GATC 2 cut(s) 150, 162
MboI GATC 2 cut(s) 148, 160
MhlI GDGCHC 1 cut(s) 175
Mly113I GGCGCC 1 cut(s) 114
MlyI GAGTC 2 cut(s) 35, 126
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 46, 58
MspA1I CMGCKG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 23, 184
NarI GGCGCC 1 cut(s) 114
NcoI CCATGG 1 cut(s) 188
NdeII GATC 2 cut(s) 148, 160
NlaIII CATG 2 cut(s) 182, 192
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 52
PasI CCCWGGG 1 cut(s) 70
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 4 cut(s) 25, 78, 81, 86
PleI GAGTC 2 cut(s) 35, 126
PluTI GGCGCC 1 cut(s) 117
PpsI GAGTC 2 cut(s) 35, 126
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 89
SatI GCNGC 4 cut(s) 24, 77, 80, 85
Sau3AI GATC 2 cut(s) 148, 160
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 35, 126
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 85
SfoI GGCGCC 1 cut(s) 115
SpeI ACTAGT 1 cut(s) 98
SsiI CCGC 4 cut(s) 76, 79, 158, 257
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 2 cut(s) 99, 352
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 2 cut(s) 135, 270
TauI GCSGC 2 cut(s) 79, 82
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 2 cut(s) 63, 249
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 2 cut(s) 23, 84
Tsp45I GTSAC 1 cut(s) 52
TspRI CASTG 2 cut(s) 63, 249
XspI CTAG 2 cut(s) 99, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.