Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019377

Physical Location & Seq

Genomic Coordinates Reverse (-)

27143490 .. 27148845

Gene Structure 5356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGAGAGACAGAAGCTTTTAGCTCCAAAAGACTAAGTTCCAAGAAAGAATTCTCCACCGGACCAACTCAAGGCCATGGAGGCTCCTCTTTGGAGCCGGAGTATCTTCGTTTCCTCTTTCCGGCCTCGGCGCACCCTAGTAACCGGAGCACCACAGAACTTCCCACTACACCCATTAGGGATGGGCCCATACCTAATACTCTCATAGCCCAATCCCCATGGCCCACATGCAACCCATTGCCCGAAGGCCCAGCAGAACCTATTTTGAAGCTAGGTTCTCCTACCAAGAAACACGGTGGGAGCCTCAATGTGATGTTTGTGTTTGAGGAGTATGATGGGGTGTCAACTGTGGACTCCATTCCTCTTAGTTCTATTGAGACATGGATCACCGCGAAGGGCTTGGCTCCTAATTTGAGAAATAAGCTCCTCCTTTCTATGATTGGTTATTCGATTGAAAGGGTAATTAGGTTGGATCATGTGGCTCGAATCGAAAGGAAGATGAACAAAGGATTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.86

Weight (kDa)

8.74

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019377)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0107571
rosa_multiflora	Rmu_co8225042.1_g000001 Rmu_sc0000753.1_g000022 Rmu_sc0001476.1_g000014 Rmu_sc0004009.1_g000004 Rmu_sc0004090.1_g000008 Rmu_sc0004924.1_g000038
rosa_roxburghii	Rroxscaffold_2G00104040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	392
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	2 cut(s)	392, 480
AcsI	RAATTY	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	71, 121
AgsI	TTSAA	2 cut(s)	268, 455
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	4 cut(s)	17, 24, 271, 424
AluI	AGCT	4 cut(s)	17, 24, 271, 424
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	2, 371
AlwI	GGATC	2 cut(s)	392, 480
AoxI	GGCC	5 cut(s)	73, 123, 185, 221, 247
ApaI	GGGCCC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	5 cut(s)	62, 185, 186, 222, 248
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	152
BccI	CCATC	2 cut(s)	176, 329
BcoDI	GTCTC	2 cut(s)	2, 371
BfaI	CTAG	2 cut(s)	138, 272
BglI	GCCNNNNNGGC	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	5 cut(s)	62, 185, 186, 222, 248
BmiI	GGNNCC	5 cut(s)	85, 96, 187, 302, 405
BpuEI	CTTGAG	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	76, 126, 218
BsaWI	WCCGGW	2 cut(s)	59, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 121
Bse3DI	GCAATG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	76, 126, 218
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	71, 121
BseMI	GCAATG	1 cut(s)	236
BseRI	GAGGAG	3 cut(s)	76, 341, 416
BseSI	GKGCMC	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	5 cut(s)	75, 125, 187, 223, 249
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	4 cut(s)	60, 98, 122, 145
BslI	CCNNNNNNNGG	2 cut(s)	71, 121
BsmAI	GTCTC	2 cut(s)	2, 371
BsnI	GGCC	5 cut(s)	75, 125, 187, 223, 249
Bsp120I	GGGCCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	152, 189
Bsp143I	GATC	2 cut(s)	384, 472
Bsp19I	CCATGG	2 cut(s)	76, 218
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	5 cut(s)	75, 125, 187, 223, 249
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	5 cut(s)	85, 96, 187, 302, 405
BspPI	GGATC	2 cut(s)	392, 480
BsrDI	GCAATG	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	76, 126, 218
BssMI	GATC	2 cut(s)	384, 472
BssT1I	CCWWGG	2 cut(s)	76, 218
Bst4CI	ACNGT	2 cut(s)	296, 349
BstDEI	CTNAG	2 cut(s)	35, 365
BstDSI	CCRYGG	2 cut(s)	76, 218
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	387, 475
BstMAI	GTCTC	2 cut(s)	2, 371
BstMBI	GATC	2 cut(s)	384, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	189
BstUI	CGCG	1 cut(s)	392
BsuRI	GGCC	5 cut(s)	75, 125, 187, 223, 249
BtgI	CCRYGG	2 cut(s)	76, 218
BtsCI	GGATG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	5 cut(s)	62, 185, 186, 222, 248
CviAII	CATG	5 cut(s)	77, 219, 228, 381, 476
DdeI	CTNAG	2 cut(s)	35, 365
DpnI	GATC	2 cut(s)	386, 474
DpnII	GATC	2 cut(s)	384, 472
Eco130I	CCWWGG	2 cut(s)	76, 218
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	50
EcoT14I	CCWWGG	2 cut(s)	76, 218
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	2 cut(s)	76, 218
FaeI	CATG	5 cut(s)	80, 222, 231, 384, 479
FaiI	YATR	9 cut(s)	78, 191, 206, 220, 229, 333, 382, 437, 477
FatI	CATG	5 cut(s)	76, 218, 227, 380, 475
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	138, 272
GlaI	GCGC	1 cut(s)	132
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	5 cut(s)	75, 125, 187, 223, 249
HapII	CCGG	4 cut(s)	60, 98, 122, 145
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	5 cut(s)	80, 222, 231, 384, 479
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	3 cut(s)	353, 486, 510
HpaII	CCGG	4 cut(s)	60, 98, 122, 145
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	2 cut(s)	345, 352
Hpy8I	GTNNAC	2 cut(s)	345, 352
HpyAV	CCTTC	2 cut(s)	239, 388
HpyCH4III	ACNGT	2 cut(s)	296, 349
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	2 cut(s)	35, 365
Hsp92II	CATG	5 cut(s)	80, 222, 231, 384, 479
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	384, 472
LmnI	GCTCC	7 cut(s)	29, 89, 94, 147, 300, 409, 429
LpnPI	CCDG	5 cut(s)	73, 111, 135, 158, 264
MaeI	CTAG	2 cut(s)	138, 272
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	386, 474
MboI	GATC	2 cut(s)	384, 472
MboII	GAAGA	2 cut(s)	98, 508
MhlI	GDGCHC	2 cut(s)	152, 189
MluCI	AATT	3 cut(s)	50, 409, 462
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	8 cut(s)	74, 97, 125, 136, 314, 319, 372, 437
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	517
MspI	CCGG	4 cut(s)	60, 98, 122, 145
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	81
NcoI	CCATGG	2 cut(s)	76, 218
NdeII	GATC	2 cut(s)	384, 472
NlaIII	CATG	5 cut(s)	80, 222, 231, 384, 479
NlaIV	GGNNCC	5 cut(s)	85, 96, 187, 302, 405
NmeAIII	GCCGAG	1 cut(s)	107
NspI	RCATGY	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	486, 510
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	5 cut(s)	85, 96, 187, 302, 405
PspOMI	GGGCCC	1 cut(s)	185
PspPI	GGNCC	5 cut(s)	62, 185, 186, 222, 248
SaqAI	TTAA	1 cut(s)	517
Sau3AI	GATC	2 cut(s)	384, 472
Sau96I	GGNCC	5 cut(s)	62, 185, 186, 222, 248
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	152, 189
SetI	ASST	8 cut(s)	19, 26, 196, 262, 273, 277, 426, 470
SinI	GGWCC	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	50, 409, 462
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	138, 272
StyI	CCWWGG	2 cut(s)	76, 218
TaaI	ACNGT	2 cut(s)	296, 349
TaqI	TCGA	3 cut(s)	449, 484, 489
TasI	AATT	3 cut(s)	50, 409, 462
TfiI	GAWTC	2 cut(s)	486, 510
Tru1I	TTAA	1 cut(s)	517
Tru9I	TTAA	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	2 cut(s)	138, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.