Rmu_sc0001476.1_g000014

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001476.1
OG0019377
Physical Location & Seq
Reverse (-)
63109 .. 64595
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001476.1_g000014.1.cds

Sequence Viewer

Length: 657 bp
atggaaggacatgcatatatacatgttatatatgtacaatcgaaacagaaacccgcctctagaagcattagacgtcgttcctcctcctcttccatcaaaactggccatttgaaaacagatcagtttctgagtaatagcagtgatgactttggtgaagaaatcagagtcaaaaatggggatgagattgggaacaagataatggttgttgtggattcgagcctcgaagccaaaggagctcttgaatgggcactgtcccacactgttcaaacccaagacaccattgtgcttcttcatgtagctcagccctgcaaacaagactcaaatgcgaagaagcttaatttaagagcttttgagcttcttcactctatgaaaaaagactgtcagaggagaaggcctggggatgttggagattgctttgtgtttcaatttgagcacaaggctgacaagaatctgatcttgtatggaggtacttggttttatcgaaacacaatggtgattttggcaaagtacgatggcataggaccggtggaggtcattccactgaagtcgattgagacgtgggttgcagtgaaaggcctggctccggcactgcgaaataaggtggctgtgtcacttgtaggctctaagctcttccatggggcgtgtcataagatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

218

Amino Acids

24.35

Weight (kDa)

9.41

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 76
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 563
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 3 cut(s) 36, 469, 509
AfiI CCNNNNNNNGG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 22
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 4 cut(s) 112, 242, 266, 425
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 2 cut(s) 394, 576
AleI CACNNNNGTG 2 cut(s) 281, 491
AluBI AGCT 6 cut(s) 236, 299, 334, 347, 355, 628
AluI AGCT 6 cut(s) 236, 299, 334, 347, 355, 628
Alw21I GWGCWC 2 cut(s) 238, 435
Alw26I GTCTC 1 cut(s) 548
AlwNI CAGNNNCTG 1 cut(s) 127
AoxI GGCC 3 cut(s) 103, 392, 574
AsiGI ACCGGT 1 cut(s) 523
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 2 cut(s) 164, 505
AvaII GGWCC 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 105
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 238, 435
BccI CCATC 2 cut(s) 101, 506
BciT130I CCWGG 2 cut(s) 396, 578
BcoDI GTCTC 1 cut(s) 548
BfaI CTAG 1 cut(s) 60
BlpI GCTNAGC 1 cut(s) 300
Bme1390I CCNGG 2 cut(s) 396, 578
Bme18I GGWCC 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 2 cut(s) 396, 578
Bpu1102I GCTNAGC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 395, 634
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 396, 578
BseDI CCNNGG 2 cut(s) 395, 634
BseGI GGATG 2 cut(s) 184, 406
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 119, 314
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 3 cut(s) 73, 76, 400
BseSI GKGCMC 1 cut(s) 250
BshFI GGCC 3 cut(s) 105, 394, 576
BshTI ACCGGT 1 cut(s) 523
BsiHKAI GWGCWC 2 cut(s) 238, 435
BsiSI CCGG 2 cut(s) 524, 584
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 1 cut(s) 548
BsmBI CGTCTC 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 3 cut(s) 105, 394, 576
Bsp1286I GDGCHC 3 cut(s) 238, 250, 435
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 2 cut(s) 118, 453
Bsp1720I GCTNAGC 1 cut(s) 300
Bsp19I CCATGG 1 cut(s) 634
BspACI CCGC 1 cut(s) 54
BspANI GGCC 3 cut(s) 105, 394, 576
BspCNI CTCAG 2 cut(s) 120, 313
BspLI GGNNCC 1 cut(s) 582
BspQI GCTCTTC 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 2 cut(s) 395, 634
BssMI GATC 2 cut(s) 118, 453
BssNI GRCGYC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 2 cut(s) 396, 578
Bst4CI ACNGT 3 cut(s) 252, 262, 380
Bst6I CTCTTC 2 cut(s) 94, 635
BstACI GRCGYC 1 cut(s) 73
BstAUI TGTACA 1 cut(s) 34
BstDEI CTNAG 3 cut(s) 128, 300, 624
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 2 cut(s) 184, 406
BstKTI GATC 2 cut(s) 121, 456
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 2 cut(s) 118, 453
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 2 cut(s) 396, 578
BstNSI RCATGY 2 cut(s) 14, 26
BstSCI CCNGG 2 cut(s) 394, 576
BstSLI GKGCMC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 105, 394, 576
BtgI CCRYGG 1 cut(s) 634
BtrI CACGTC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 184, 406
BtsI GCAGTG 3 cut(s) 145, 573, 587
BtsIMutI CAGTG 6 cut(s) 145, 248, 258, 539, 573, 587
CaiI CAGNNNCTG 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 1 cut(s) 521
Csp6I GTAC 3 cut(s) 35, 468, 508
CspAI ACCGGT 1 cut(s) 523
CviAII CATG 4 cut(s) 11, 23, 293, 635
CviQI GTAC 3 cut(s) 35, 468, 508
DdeI CTNAG 3 cut(s) 128, 300, 624
DpnI GATC 2 cut(s) 120, 455
DpnII GATC 2 cut(s) 118, 453
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 94, 635
EarI CTCTTC 2 cut(s) 94, 635
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 634
Eco147I AGGCCT 2 cut(s) 394, 576
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 521
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 563
EcoICRI GAGCTC 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 394, 576
EcoT14I CCWWGG 1 cut(s) 634
EcoT22I ATGCAT 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 634
Esp3I CGTCTC 1 cut(s) 548
FaeI CATG 4 cut(s) 14, 26, 296, 638
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 238
FatI CATG 4 cut(s) 10, 22, 292, 634
FauI CCCGC 1 cut(s) 61
FokI GGATG 2 cut(s) 191, 413
FriOI GRGCYC 1 cut(s) 238
FspBI CTAG 1 cut(s) 60
HaeIII GGCC 3 cut(s) 105, 394, 576
HapII CCGG 2 cut(s) 524, 584
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 4 cut(s) 14, 26, 296, 638
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 4 cut(s) 165, 212, 317, 448
HpaII CCGG 2 cut(s) 524, 584
HphI GGTGA 2 cut(s) 164, 505
Hpy188I TCNGA 4 cut(s) 129, 164, 384, 453
Hpy188III TCNNGA 2 cut(s) 60, 239
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 3 cut(s) 252, 262, 380
HpyCH4IV ACGT 2 cut(s) 73, 557
HpyCH4V TGCA 3 cut(s) 14, 309, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 3 cut(s) 128, 300, 624
HpySE526I ACGT 2 cut(s) 73, 557
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 4 cut(s) 14, 26, 296, 638
Kzo9I GATC 2 cut(s) 118, 453
LguI GCTCTTC 1 cut(s) 635
LmnI GCTCC 2 cut(s) 233, 586
LpnPI CCDG 8 cut(s) 87, 319, 381, 408, 537, 563, 590, 597
MaeI CTAG 1 cut(s) 60
MaeII ACGT 2 cut(s) 73, 557
MaeIII GTNAC 1 cut(s) 609
MalI GATC 2 cut(s) 120, 455
MboI GATC 2 cut(s) 118, 453
MboII GAAGA 6 cut(s) 81, 167, 281, 340, 350, 622
MhlI GDGCHC 3 cut(s) 238, 250, 435
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 2 cut(s) 337, 425
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 2 cut(s) 174, 311
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 8 cut(s) 67, 91, 94, 97, 230, 378, 458, 523
Mox20I TGGCCA 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 16
MscI TGGCCA 1 cut(s) 105
MseI TTAA 2 cut(s) 336, 341
MslI CAYNNNNRTG 2 cut(s) 281, 491
Msp20I TGGCCA 1 cut(s) 105
MspI CCGG 2 cut(s) 524, 584
MspR9I CCNGG 2 cut(s) 396, 578
MvaI CCWGG 2 cut(s) 396, 578
MwoI GCNNNNNNNGC 1 cut(s) 233
NcoI CCATGG 1 cut(s) 634
NdeII GATC 2 cut(s) 118, 453
NlaIII CATG 4 cut(s) 14, 26, 296, 638
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 16
NspI RCATGY 2 cut(s) 14, 26
OliI CACNNNNGTG 2 cut(s) 281, 491
PceI AGGCCT 2 cut(s) 394, 576
PciI ACATGT 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 554
PfeI GAWTC 2 cut(s) 212, 448
PinAI ACCGGT 1 cut(s) 523
PleI GAGTC 2 cut(s) 173, 311
PpsI GAGTC 2 cut(s) 173, 311
PscI ACATGT 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 394, 576
PspGI CCWGG 2 cut(s) 394, 576
PspN4I GGNNCC 1 cut(s) 582
PspPI GGNCC 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 127
RsaI GTAC 3 cut(s) 36, 469, 509
RsaNI GTAC 3 cut(s) 35, 468, 508
RseI CAYNNNNRTG 2 cut(s) 281, 491
SacI GAGCTC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 635
SaqAI TTAA 2 cut(s) 336, 341
Sau3AI GATC 2 cut(s) 118, 453
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 2 cut(s) 174, 311
ScrFI CCNGG 2 cut(s) 396, 578
SduI GDGCHC 3 cut(s) 238, 250, 435
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 2 cut(s) 281, 491
Sse9I AATT 2 cut(s) 337, 425
SseBI AGGCCT 2 cut(s) 394, 576
SsiI CCGC 1 cut(s) 54
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 238
StuI AGGCCT 2 cut(s) 394, 576
StyD4I CCNGG 2 cut(s) 394, 576
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 3 cut(s) 252, 262, 380
TaiI ACGT 2 cut(s) 76, 560
TaqI TCGA 5 cut(s) 41, 215, 222, 481, 548
TasI AATT 2 cut(s) 337, 425
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 2 cut(s) 212, 448
Tru1I TTAA 2 cut(s) 336, 341
Tru9I TTAA 2 cut(s) 336, 341
TscAI CASTG 6 cut(s) 145, 255, 265, 546, 573, 594
TseFI GTSAC 1 cut(s) 609
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 2 cut(s) 281, 383
TspRI CASTG 6 cut(s) 145, 255, 265, 546, 573, 594
VpaK11BI GGWCC 1 cut(s) 521
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 2 cut(s) 14, 26
XspI CTAG 1 cut(s) 60
ZraI GACGTC 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.